RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 IL34Q6ZMJ4 242 aa9.64□□□□□ -0.87
PTPRF-204ENST00000412568 OR1K1Q8NGR3 316 aa9.64□□□□□ -0.87
PTPRF-204ENST00000412568 SCNM1Q9BWG6 230 aa9.64□□□□□ -0.87
PTPRF-204ENST00000412568 RALYQ9UKM9 306 aaKnown RBP9.64□□□□□ -0.87
PTPRF-204ENST00000412568 TNFSF18Q9UNG2 199 aa9.64□□□□□ -0.87
PTPRF-204ENST00000412568 PRR14LQ5THK1 2151 aa9.64□□□□□ -0.87
PTPRF-204ENST00000412568 LRRC3CA6NJW4 275 aa9.64□□□□□ -0.87
PTPRF-204ENST00000412568 PRR33A8MZF0 331 aa9.64□□□□□ -0.87
PTPRF-204ENST00000412568 PMELP40967 661 aa9.64□□□□□ -0.87
PTPRF-204ENST00000412568 CEACAM21Q3KPI0 293 aa9.64□□□□□ -0.87
PTPRF-204ENST00000412568 C10orf128Q5T292 105 aa9.64□□□□□ -0.87
PTPRF-204ENST00000412568 ZNF660Q6AZW8 331 aaPredicted RBP9.64□□□□□ -0.87
PTPRF-204ENST00000412568 TMEM65Q6PI78 240 aa9.64□□□□□ -0.87
PTPRF-204ENST00000412568 CALHM1Q8IU99 346 aa9.64□□□□□ -0.87
PTPRF-204ENST00000412568 CPEB3Q8NE35 698 aaKnown RBP9.64□□□□□ -0.87
PTPRF-204ENST00000412568 OR10P1Q8NGE3 313 aa9.64□□□□□ -0.87
PTPRF-204ENST00000412568 TIMD4Q96H15 378 aa9.64□□□□□ -0.87
PTPRF-204ENST00000412568 SMIM7Q9BQ49 75 aa9.64□□□□□ -0.87
PTPRF-204ENST00000412568 MMP26Q9NRE1 261 aa9.64□□□□□ -0.87
PTPRF-204ENST00000412568 UQCC1Q9NVA1 299 aa9.64□□□□□ -0.87
PTPRF-204ENST00000412568 RASL12Q9NYN1 266 aa9.64□□□□□ -0.87
PTPRF-204ENST00000412568 LY6G6EA0A0G2JKS1 128 aa9.64□□□□□ -0.87
PTPRF-204ENST00000412568 NPIPB13A6NJU9 1138 aa9.64□□□□□ -0.87
PTPRF-204ENST00000412568 TRDCB7Z8K6 153 aa9.64□□□□□ -0.87
PTPRF-204ENST00000412568 NPIPB4C9JG80 1138 aa9.64□□□□□ -0.87
PTPRF-204ENST00000412568 CRYBA1P05813 215 aa9.64□□□□□ -0.87
PTPRF-204ENST00000412568 CELA3BP08861 270 aa9.64□□□□□ -0.87
PTPRF-204ENST00000412568 MGST1P10620 155 aaKnown RBP9.64□□□□□ -0.87
PTPRF-204ENST00000412568 DEFA4P12838 97 aa9.64□□□□□ -0.87
PTPRF-204ENST00000412568 COX7A1P24310 79 aa9.64□□□□□ -0.87
PTPRF-204ENST00000412568 PPP1CCP36873 323 aaKnown RBP9.64□□□□□ -0.87
PTPRF-204ENST00000412568 SURF2Q15527 256 aaPredicted RBP9.64□□□□□ -0.87
PTPRF-204ENST00000412568 OR5C1Q8NGR4 320 aa9.64□□□□□ -0.87
PTPRF-204ENST00000412568 GNPNAT1Q96EK6 184 aaPredicted RBP9.64□□□□□ -0.87
PTPRF-204ENST00000412568 MIOXQ9UGB7 285 aa9.64□□□□□ -0.87
PTPRF-204ENST00000412568 GPR132Q9UNW8 380 aa9.64□□□□□ -0.87
PTPRF-204ENST00000412568 STRAPQ9Y3F4 350 aaKnown RBP9.64□□□□□ -0.87
PTPRF-204ENST00000412568 U3KQA8 63 aa9.64□□□□□ -0.87
PTPRF-204ENST00000412568 C2orf16Q68DN1 1984 aa9.64□□□□□ -0.87
PTPRF-204ENST00000412568 PTGDSP41222 190 aa9.64□□□□□ -0.87
PTPRF-204ENST00000412568 RNF151Q2KHN1 245 aa9.64□□□□□ -0.87
PTPRF-204ENST00000412568 TMEM54Q969K7 222 aa9.64□□□□□ -0.87
PTPRF-204ENST00000412568 MRGPRFQ96AM1 343 aa9.64□□□□□ -0.87
PTPRF-204ENST00000412568 PHYHIPLQ96FC7 376 aa9.64□□□□□ -0.87
PTPRF-204ENST00000412568 ABHD17AQ96GS6 310 aa9.64□□□□□ -0.87
PTPRF-204ENST00000412568 USB1Q9BQ65 265 aaKnown RBP9.64□□□□□ -0.87
PTPRF-204ENST00000412568 NMES1Q9C002 83 aa9.64□□□□□ -0.87
PTPRF-204ENST00000412568 TMEM14DPA8MWL7 114 aa9.63□□□□□ -0.87
PTPRF-204ENST00000412568 PPIHO43447 177 aaKnown RBP9.63□□□□□ -0.87
PTPRF-204ENST00000412568 NDUFB3O43676 98 aa9.63□□□□□ -0.87
PTPRF-204ENST00000412568 SSTP61278 116 aa9.63□□□□□ -0.87
PTPRF-204ENST00000412568 DHODHQ02127 395 aa9.63□□□□□ -0.87
PTPRF-204ENST00000412568 FAM27E3Q08E93 113 aa9.63□□□□□ -0.87
PTPRF-204ENST00000412568 ZNF273Q14593 569 aa9.63□□□□□ -0.87
PTPRF-204ENST00000412568 PLAC9Q5JTB6 97 aa9.63□□□□□ -0.87
PTPRF-204ENST00000412568 TMEM37Q8WXS4 190 aa9.63□□□□□ -0.87
PTPRF-204ENST00000412568 UHRF2Q96PU4 802 aa9.63□□□□□ -0.87
PTPRF-204ENST00000412568 SHARPINQ9H0F6 387 aa9.63□□□□□ -0.87
PTPRF-204ENST00000412568 LY86O95711 162 aa9.63□□□□□ -0.87
PTPRF-204ENST00000412568 IZUMO4Q1ZYL8 232 aa9.63□□□□□ -0.87
PTPRF-204ENST00000412568 VAX1Q5SQQ9 334 aa9.63□□□□□ -0.87
PTPRF-204ENST00000412568 ZNF385CQ66K41 422 aaPredicted RBP9.63□□□□□ -0.87
PTPRF-204ENST00000412568 SLC36A1Q7Z2H8 476 aa9.63□□□□□ -0.87
PTPRF-204ENST00000412568 MSI2Q96DH6 328 aaKnown RBP9.63□□□□□ -0.87
PTPRF-204ENST00000412568 COMMD5Q9GZQ3 224 aa9.63□□□□□ -0.87
PTPRF-204ENST00000412568 SAP30LQ9HAJ7 183 aa9.63□□□□□ -0.87
PTPRF-204ENST00000412568 IL36RNQ9UBH0 155 aa9.63□□□□□ -0.87
PTPRF-204ENST00000412568 MED13Q9UHV7 2174 aa9.63□□□□□ -0.87
PTPRF-204ENST00000412568 UBE2L5PA0A1B0GUS4 154 aa9.63□□□□□ -0.87
PTPRF-204ENST00000412568 hCG_1809904A0A1W2PP81 198 aa9.63□□□□□ -0.87
PTPRF-204ENST00000412568 A0A1W2PPE2 198 aa9.63□□□□□ -0.87
PTPRF-204ENST00000412568 A0A1W2PR64 198 aa9.63□□□□□ -0.87
PTPRF-204ENST00000412568 A0A1W2PRV1 198 aa9.63□□□□□ -0.87
PTPRF-204ENST00000412568 NKX2-6A6NCS4 301 aa9.63□□□□□ -0.87
PTPRF-204ENST00000412568 OR2A4O95047 310 aa9.63□□□□□ -0.87
PTPRF-204ENST00000412568 PRF1P14222 555 aa9.63□□□□□ -0.87
PTPRF-204ENST00000412568 FHL1Q13642 323 aa9.63□□□□□ -0.87
PTPRF-204ENST00000412568 RNF144BQ7Z419 303 aa9.63□□□□□ -0.87
PTPRF-204ENST00000412568 OR2C3Q8N628 320 aa9.63□□□□□ -0.87
PTPRF-204ENST00000412568 KLF14Q8TD94 323 aaPredicted RBP9.63□□□□□ -0.87
PTPRF-204ENST00000412568 OR2A7Q96R45 310 aa9.63□□□□□ -0.87
PTPRF-204ENST00000412568 TMPRSS5Q9H3S3 457 aa9.63□□□□□ -0.87
PTPRF-204ENST00000412568 ZMAT5Q9UDW3 170 aaKnown RBP9.63□□□□□ -0.87
PTPRF-204ENST00000412568 CHD7Q9P2D1 2997 aa9.63□□□□□ -0.87
PTPRF-204ENST00000412568 PLCE1Q9P212 2302 aa9.62□□□□□ -0.87
PTPRF-204ENST00000412568 PCDH15Q96QU1 1955 aa9.62□□□□□ -0.87
PTPRF-204ENST00000412568 FAM74A7A6NL05 159 aa9.62□□□□□ -0.87
PTPRF-204ENST00000412568 ST8SIA5O15466 376 aa9.62□□□□□ -0.87
PTPRF-204ENST00000412568 LHX2P50458 406 aa9.62□□□□□ -0.87
PTPRF-204ENST00000412568 FAM74A3Q4VXF1 159 aa9.62□□□□□ -0.87
PTPRF-204ENST00000412568 ZNF787Q6DD87 383 aa9.62□□□□□ -0.87
PTPRF-204ENST00000412568 LIAT1Q6ZQX7 453 aa9.62□□□□□ -0.87
PTPRF-204ENST00000412568 OR5AC2Q9NZP5 309 aa9.62□□□□□ -0.87
PTPRF-204ENST00000412568 AMDHD2Q9Y303 409 aa9.62□□□□□ -0.87
PTPRF-204ENST00000412568 AHRRA9YTQ3 701 aa9.62□□□□□ -0.87
PTPRF-204ENST00000412568 RHBDL1O75783 438 aa9.62□□□□□ -0.87
PTPRF-204ENST00000412568 SPP1P10451 314 aa9.62□□□□□ -0.87
PTPRF-204ENST00000412568 RBMXL3Q8N7X1 1067 aaKnown RBP9.62□□□□□ -0.87
PTPRF-204ENST00000412568 ZIC4Q8N9L1 334 aa9.62□□□□□ -0.87
PTPRF-204ENST00000412568 OR4F5Q8NH21 305 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms