RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 SIGMAR1Q99720 223 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 ALKBH7Q9BT30 221 aaPredicted RBP6.38□□□□□ -1.39
SCN9A-202ENST00000409435 NTNG1Q9Y2I2 539 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 LRRC3CA6NJW4 275 aa6.37□□□□□ -1.39
SCN9A-202ENST00000409435 BCL3P20749 454 aa6.37□□□□□ -1.39
SCN9A-202ENST00000409435 PEBP1P30086 187 aaKnown RBP6.37□□□□□ -1.39
SCN9A-202ENST00000409435 EFNA4P52798 201 aa6.37□□□□□ -1.39
SCN9A-202ENST00000409435 SNRPGP62308 76 aaKnown RBP6.37□□□□□ -1.39
SCN9A-202ENST00000409435 SNRPNP63162 240 aaKnown RBP6.37□□□□□ -1.39
SCN9A-202ENST00000409435 RELBQ01201 579 aa6.37□□□□□ -1.39
SCN9A-202ENST00000409435 LINC01356Q8N9X3 169 aa6.37□□□□□ -1.39
SCN9A-202ENST00000409435 OR51E1Q8TCB6 317 aa6.37□□□□□ -1.39
SCN9A-202ENST00000409435 PPP1R1CQ8WVI7 109 aa6.37□□□□□ -1.39
SCN9A-202ENST00000409435 PELI1Q96FA3 418 aa6.37□□□□□ -1.39
SCN9A-202ENST00000409435 WDR89Q96FK6 387 aaPredicted RBP6.37□□□□□ -1.39
SCN9A-202ENST00000409435 ADTRPQ96IZ2 230 aa6.37□□□□□ -1.39
SCN9A-202ENST00000409435 OPALINQ96PE5 141 aa6.37□□□□□ -1.39
SCN9A-202ENST00000409435 SSBP3Q9BWW4 388 aaPredicted RBP6.37□□□□□ -1.39
SCN9A-202ENST00000409435 UQCC1Q9NVA1 299 aa6.37□□□□□ -1.39
SCN9A-202ENST00000409435 PRSS50Q9UI38 385 aa6.37□□□□□ -1.39
SCN9A-202ENST00000409435 A4GNTQ9UNA3 340 aa6.37□□□□□ -1.39
SCN9A-202ENST00000409435 RNF114Q9Y508 228 aa6.37□□□□□ -1.39
SCN9A-202ENST00000409435 CLDN16Q9Y5I7 305 aa6.37□□□□□ -1.39
SCN9A-202ENST00000409435 KIR2DS1A0A191URI9 304 aa6.37□□□□□ -1.39
SCN9A-202ENST00000409435 A6NNC1 897 aa6.37□□□□□ -1.39
SCN9A-202ENST00000409435 GEMIN2O14893 280 aaKnown RBP6.37□□□□□ -1.39
SCN9A-202ENST00000409435 MELTFP08582 738 aa6.37□□□□□ -1.39
SCN9A-202ENST00000409435 COL8A1P27658 744 aa6.37□□□□□ -1.39
SCN9A-202ENST00000409435 KIR2DS4P43632 304 aa6.37□□□□□ -1.39
SCN9A-202ENST00000409435 VDAC2P45880 294 aaPredicted RBP6.37□□□□□ -1.39
SCN9A-202ENST00000409435 GNG4P50150 75 aa6.37□□□□□ -1.39
SCN9A-202ENST00000409435 KIR2DS1Q14954 304 aa6.37□□□□□ -1.39
SCN9A-202ENST00000409435 AMER3Q8N944 861 aa6.37□□□□□ -1.39
SCN9A-202ENST00000409435 INSIG2Q9Y5U4 225 aa6.37□□□□□ -1.39
SCN9A-202ENST00000409435 FITM1A5D6W6 292 aa6.37□□□□□ -1.39
SCN9A-202ENST00000409435 HMGN4O00479 90 aa6.37□□□□□ -1.39
SCN9A-202ENST00000409435 PTGFRP43088 359 aa6.37□□□□□ -1.39
SCN9A-202ENST00000409435 FUT7Q11130 342 aa6.37□□□□□ -1.39
SCN9A-202ENST00000409435 PMCHL2Q9BQD1 86 aa6.37□□□□□ -1.39
SCN9A-202ENST00000409435 ZNF703Q9H7S9 590 aaPredicted RBP6.37□□□□□ -1.39
SCN9A-202ENST00000409435 TIMM9Q9Y5J7 89 aa6.37□□□□□ -1.39
SCN9A-202ENST00000409435 OR4C46A6NHA9 309 aa6.37□□□□□ -1.39
SCN9A-202ENST00000409435 OR5AC1P0C628 307 aa6.37□□□□□ -1.39
SCN9A-202ENST00000409435 PDCD1Q15116 288 aa6.37□□□□□ -1.39
SCN9A-202ENST00000409435 ECSCRQ19T08 205 aa6.37□□□□□ -1.39
SCN9A-202ENST00000409435 CBLN2Q8IUK8 224 aa6.37□□□□□ -1.39
SCN9A-202ENST00000409435 OR52I2Q8NH67 350 aa6.37□□□□□ -1.39
SCN9A-202ENST00000409435 HGDQ93099 445 aa6.37□□□□□ -1.39
SCN9A-202ENST00000409435 FLVCR1Q9Y5Y0 555 aa6.37□□□□□ -1.39
SCN9A-202ENST00000409435 EP300Q09472 2414 aaPredicted RBP6.37□□□□□ -1.39
SCN9A-202ENST00000409435 A0A087WV48 116 aa6.37□□□□□ -1.39
SCN9A-202ENST00000409435 IL5P05113 134 aa6.37□□□□□ -1.39
SCN9A-202ENST00000409435 GLI4P10075 376 aa6.37□□□□□ -1.39
SCN9A-202ENST00000409435 ZNF93P35789 620 aaPredicted RBP6.37□□□□□ -1.39
SCN9A-202ENST00000409435 DHODHQ02127 395 aa6.37□□□□□ -1.39
SCN9A-202ENST00000409435 COX20Q5RI15 118 aa6.37□□□□□ -1.39
SCN9A-202ENST00000409435 LAMTOR1Q6IAA8 161 aa6.37□□□□□ -1.39
SCN9A-202ENST00000409435 CBLL1Q75N03 491 aa6.37□□□□□ -1.39
SCN9A-202ENST00000409435 CALHM1Q8IU99 346 aa6.37□□□□□ -1.39
SCN9A-202ENST00000409435 TMEM106AQ96A25 262 aa6.37□□□□□ -1.39
SCN9A-202ENST00000409435 GALMQ96C23 342 aa6.37□□□□□ -1.39
SCN9A-202ENST00000409435 GP6Q9HCN6 339 aa6.37□□□□□ -1.39
SCN9A-202ENST00000409435 AKIP1Q9NQ31 210 aa6.37□□□□□ -1.39
SCN9A-202ENST00000409435 PLSCR4Q9NRQ2 329 aa6.37□□□□□ -1.39
SCN9A-202ENST00000409435 CRIM1Q9NZV1 1036 aa6.37□□□□□ -1.39
SCN9A-202ENST00000409435 PSG11Q9UQ72 335 aa6.37□□□□□ -1.39
SCN9A-202ENST00000409435 MPC1Q9Y5U8 109 aa6.37□□□□□ -1.39
SCN9A-202ENST00000409435 SPTA1P02549 2419 aa6.36□□□□□ -1.39
SCN9A-202ENST00000409435 TCRBV4S1A1TA0A5B7 111 aa6.36□□□□□ -1.39
SCN9A-202ENST00000409435 FCMRO60667 390 aa6.36□□□□□ -1.39
SCN9A-202ENST00000409435 NTN1O95631 604 aa6.36□□□□□ -1.39
SCN9A-202ENST00000409435 INHBBP09529 407 aa6.36□□□□□ -1.39
SCN9A-202ENST00000409435 SMIM18P0DKX4 95 aa6.36□□□□□ -1.39
SCN9A-202ENST00000409435 ZNF273Q14593 569 aa6.36□□□□□ -1.39
SCN9A-202ENST00000409435 PRAMEF5Q5TYX0 476 aa6.36□□□□□ -1.39
SCN9A-202ENST00000409435 PRAMEF6Q5VXH4 476 aa6.36□□□□□ -1.39
SCN9A-202ENST00000409435 PEAR1Q5VY43 1037 aaPredicted RBP6.36□□□□□ -1.39
SCN9A-202ENST00000409435 LURAP1LQ8IV03 231 aa6.36□□□□□ -1.39
SCN9A-202ENST00000409435 NTNG2Q96CW9 530 aa6.36□□□□□ -1.39
SCN9A-202ENST00000409435 PRORYQ9H606 182 aa6.36□□□□□ -1.39
SCN9A-202ENST00000409435 SPANXA1Q9NS26 97 aa6.36□□□□□ -1.39
SCN9A-202ENST00000409435 SIRT5Q9NXA8 310 aa6.36□□□□□ -1.39
SCN9A-202ENST00000409435 PSENENQ9NZ42 101 aa6.36□□□□□ -1.39
SCN9A-202ENST00000409435 PPIAL4CA0A0B4J2A2 164 aa6.36□□□□□ -1.39
SCN9A-202ENST00000409435 CT62P0C5K7 136 aa6.36□□□□□ -1.39
SCN9A-202ENST00000409435 PPIAL4GP0DN37 164 aa6.36□□□□□ -1.39
SCN9A-202ENST00000409435 SELENOPP49908 381 aa6.36□□□□□ -1.39
SCN9A-202ENST00000409435 UCP2P55851 309 aa6.36□□□□□ -1.39
SCN9A-202ENST00000409435 IZUMO4Q1ZYL8 232 aa6.36□□□□□ -1.39
SCN9A-202ENST00000409435 BSXQ3C1V8 233 aa6.36□□□□□ -1.39
SCN9A-202ENST00000409435 DNLZQ5SXM8 178 aa6.36□□□□□ -1.39
SCN9A-202ENST00000409435 SLC25A26Q70HW3 274 aa6.36□□□□□ -1.39
SCN9A-202ENST00000409435 PRSS45Q7RTY3 260 aa6.36□□□□□ -1.39
SCN9A-202ENST00000409435 ZDHHC22Q8N966 263 aa6.36□□□□□ -1.39
SCN9A-202ENST00000409435 BEND2Q8NDZ0 799 aa6.36□□□□□ -1.39
SCN9A-202ENST00000409435 OR1N2Q8NGR9 330 aa6.36□□□□□ -1.39
SCN9A-202ENST00000409435 DPH3Q96FX2 82 aa6.36□□□□□ -1.39
SCN9A-202ENST00000409435 UCN2Q96RP3 112 aa6.36□□□□□ -1.39
SCN9A-202ENST00000409435 BANF2Q9H503 90 aa6.36□□□□□ -1.39
SCN9A-202ENST00000409435 TMEM38AQ9H6F2 299 aa6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms