RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 SPANXA1Q9NS26 97 aa5.34□□□□□ -1.55
SCN1A-203ENST00000409050 NAGKQ9UJ70 344 aa5.34□□□□□ -1.55
SCN1A-203ENST00000409050 A0A0B4J293 547 aa5.34□□□□□ -1.55
SCN1A-203ENST00000409050 VSIG8P0DPA2 414 aa5.34□□□□□ -1.55
SCN1A-203ENST00000409050 PRF1P14222 555 aa5.34□□□□□ -1.55
SCN1A-203ENST00000409050 ATP6V0CP27449 155 aa5.34□□□□□ -1.55
SCN1A-203ENST00000409050 PPP1CCP36873 323 aaKnown RBP5.34□□□□□ -1.55
SCN1A-203ENST00000409050 DUSP2Q05923 314 aa5.34□□□□□ -1.55
SCN1A-203ENST00000409050 CEACAM21Q3KPI0 293 aa5.34□□□□□ -1.55
SCN1A-203ENST00000409050 SMUG1Q53HV7 270 aa5.34□□□□□ -1.55
SCN1A-203ENST00000409050 GAPTQ8N292 157 aa5.34□□□□□ -1.55
SCN1A-203ENST00000409050 RAB37Q96AX2 223 aa5.34□□□□□ -1.55
SCN1A-203ENST00000409050 PGLYRP3Q96LB9 341 aa5.34□□□□□ -1.55
SCN1A-203ENST00000409050 GPR132Q9UNW8 380 aa5.34□□□□□ -1.55
SCN1A-203ENST00000409050 MARF1Q9Y4F3 1742 aaKnown RBP5.34□□□□□ -1.55
SCN1A-203ENST00000409050 IGHMP01871 453 aa5.34□□□□□ -1.56
SCN1A-203ENST00000409050 FOLR2P14207 255 aa5.34□□□□□ -1.56
SCN1A-203ENST00000409050 GZMMP51124 257 aa5.34□□□□□ -1.56
SCN1A-203ENST00000409050 MEF2BQ02080 365 aaPredicted RBP5.34□□□□□ -1.56
SCN1A-203ENST00000409050 FBXW9Q5XUX1 488 aa5.34□□□□□ -1.56
SCN1A-203ENST00000409050 SLC23A3Q6PIS1 610 aa5.34□□□□□ -1.56
SCN1A-203ENST00000409050 THSD4Q6ZMP0 1018 aa5.34□□□□□ -1.56
SCN1A-203ENST00000409050 SNX22Q96L94 193 aa5.34□□□□□ -1.56
SCN1A-203ENST00000409050 MIEN1Q9BRT3 115 aa5.34□□□□□ -1.56
SCN1A-203ENST00000409050 RBKSQ9H477 322 aa5.34□□□□□ -1.56
SCN1A-203ENST00000409050 ADAP1O75689 374 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 GLI4P10075 376 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 NRN1LQ496H8 165 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 TCF23Q7RTU1 214 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 LINC01555Q8NAE3 123 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 ZNF436-AS1Q8NC38 126 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-203ENST00000409050 OR1B1Q8NGR6 318 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 SMIM8Q96KF7 97 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 TMEM208Q9BTX3 173 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 NPDC1Q9NQX5 325 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-203ENST00000409050 FAM206AQ9NX38 181 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 WASHC3Q9Y3C0 194 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 A0A1W2PPC1 479 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 H0Y8X5 98 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 LIPFP07098 398 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 NPBWR2P48146 333 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 ANKRD34AQ69YU3 496 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 BHLHA9Q7RTU4 235 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 GLCCI1Q86VQ1 547 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 OR8I2Q8N0Y5 310 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 PTPMT1Q8WUK0 201 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-203ENST00000409050 FBXO17Q96EF6 278 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 ANKRD10Q9NXR5 420 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 NTMQ9P121 344 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 JPT1Q9UK76 154 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 SF3B6Q9Y3B4 125 aaKnown RBP5.33□□□□□ -1.56
SCN1A-203ENST00000409050 ADAMTSL3P82987 1691 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 TMEM189A5PLL7 270 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 OR2W5A6NFC9 320 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 PAGE4O60829 102 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 WISP3O95389 354 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-203ENST00000409050 CA2P00918 260 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 ERGP11308 486 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 PSG6Q00889 435 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 SLC25A34Q6PIV7 304 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 TMEM183AQ8IXX5 376 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 ZNF645Q8N7E2 425 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 OR11H7Q8NGC8 314 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 OR1P1Q8NH06 330 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 NEUROG1Q92886 237 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 HARBI1Q96MB7 349 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 MAP1LC3AQ9H492 121 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 ZNF430Q9H8G1 570 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-203ENST00000409050 LHX9Q9NQ69 397 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 FUT9Q9Y231 359 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 TRBV5-7A0A0A0MS05 114 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 GAGE10A6NGK3 116 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 C5orf67F2Z3F1 127 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 NPIPB9F8W1W9 429 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 J3QR06 171 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 K7N7A8 449 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 CLDN14O95500 239 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 LIFP15018 202 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 CDX1P47902 265 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-203ENST00000409050 FMODQ06828 376 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 SAPCD1Q5SSQ6 148 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 FAM109BQ6ICB4 259 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-203ENST00000409050 UNQ9370/PRO34162Q6UXP9 181 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 MRGPRDQ8TDS7 321 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 SPSB4Q96A44 273 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 RASL10BQ96S79 203 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 TRPM3Q9HCF6 1732 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-203ENST00000409050 M0R3E3 92 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 HLA-DRB1P01911 266 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 CD74P04233 296 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 FCGR3AP08637 254 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 CAMPP49913 170 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 SLC35B1P78383 322 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 ZNF658BQ4V348 819 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-203ENST00000409050 ZNF383Q8NA42 475 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 SLC6A13Q9NSD5 602 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 METTL1Q9UBP6 276 aaKnown RBP5.33□□□□□ -1.56
SCN1A-203ENST00000409050 KCNE5Q9UJ90 142 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 INSIG2Q9Y5U4 225 aa5.33□□□□□ -1.56
SCN1A-203ENST00000409050 C19orf67A6NJJ6 358 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 132.4 ms