RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 FAM117AQ9C073 453 aa10.39□□□□□ -0.75
HMGB1-206ENST00000405805 NAA60Q9H7X0 242 aa10.39□□□□□ -0.75
HMGB1-206ENST00000405805 TMEM14DPA8MWL7 114 aa10.38□□□□□ -0.75
HMGB1-206ENST00000405805 EXT1Q16394 746 aa10.38□□□□□ -0.75
HMGB1-206ENST00000405805 SNAI3Q3KNW1 292 aa10.38□□□□□ -0.75
HMGB1-206ENST00000405805 OR2C3Q8N628 320 aa10.38□□□□□ -0.75
HMGB1-206ENST00000405805 OR2T10Q8NGZ9 312 aa10.38□□□□□ -0.75
HMGB1-206ENST00000405805 TMEM230Q96A57 120 aa10.38□□□□□ -0.75
HMGB1-206ENST00000405805 GAL3ST2Q9H3Q3 398 aa10.38□□□□□ -0.75
HMGB1-206ENST00000405805 ZNF581Q9P0T4 197 aa10.38□□□□□ -0.75
HMGB1-206ENST00000405805 ZNF835Q9Y2P0 537 aa10.38□□□□□ -0.75
HMGB1-206ENST00000405805 PRR19A6NJB7 356 aa10.38□□□□□ -0.75
HMGB1-206ENST00000405805 LAMTOR5O43504 91 aa10.38□□□□□ -0.75
HMGB1-206ENST00000405805 OR7C2O60412 319 aa10.38□□□□□ -0.75
HMGB1-206ENST00000405805 HIST1H2BKO60814 126 aa10.38□□□□□ -0.75
HMGB1-206ENST00000405805 OPN1MWP04001 364 aa10.38□□□□□ -0.75
HMGB1-206ENST00000405805 HIST1H2BJP06899 126 aa10.38□□□□□ -0.75
HMGB1-206ENST00000405805 OPN1MW2P0DN77 364 aa10.38□□□□□ -0.75
HMGB1-206ENST00000405805 OPN1MW3P0DN78 364 aa10.38□□□□□ -0.75
HMGB1-206ENST00000405805 IGFBP3P17936 291 aaPredicted RBP10.38□□□□□ -0.75
HMGB1-206ENST00000405805 HIST1H2BOP23527 126 aa10.38□□□□□ -0.75
HMGB1-206ENST00000405805 HIST1H2BBP33778 126 aa10.38□□□□□ -0.75
HMGB1-206ENST00000405805 HIST1H2BDP58876 126 aa10.38□□□□□ -0.75
HMGB1-206ENST00000405805 UBE2G2P60604 165 aa10.38□□□□□ -0.75
HMGB1-206ENST00000405805 LSM6P62312 80 aaKnown RBP10.38□□□□□ -0.75
HMGB1-206ENST00000405805 HIST1H2BCP62807 126 aa10.38□□□□□ -0.75
HMGB1-206ENST00000405805 IGLV3-21P80748 117 aaPredicted RBP10.38□□□□□ -0.75
HMGB1-206ENST00000405805 HIST2H2BEQ16778 126 aa10.38□□□□□ -0.75
HMGB1-206ENST00000405805 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.38□□□□□ -0.75
HMGB1-206ENST00000405805 ZNF468Q5VIY5 522 aaPredicted RBP10.38□□□□□ -0.75
HMGB1-206ENST00000405805 FDX2Q6P4F2 183 aa10.38□□□□□ -0.75
HMGB1-206ENST00000405805 OR10S1Q8NGN2 331 aa10.38□□□□□ -0.75
HMGB1-206ENST00000405805 HIST1H2BHQ93079 126 aa10.38□□□□□ -0.75
HMGB1-206ENST00000405805 HIST1H2BNQ99877 126 aa10.38□□□□□ -0.75
HMGB1-206ENST00000405805 HIST1H2BMQ99879 126 aa10.38□□□□□ -0.75
HMGB1-206ENST00000405805 SLC35D1Q9NTN3 355 aa10.38□□□□□ -0.75
HMGB1-206ENST00000405805 HEATR1Q9H583 2144 aaKnown RBP10.38□□□□□ -0.75
HMGB1-206ENST00000405805 B4DEV8 164 aa10.38□□□□□ -0.75
HMGB1-206ENST00000405805 CCL3P10147 92 aa10.38□□□□□ -0.75
HMGB1-206ENST00000405805 ZNF154Q13106 437 aa10.38□□□□□ -0.75
HMGB1-206ENST00000405805 HLA-BQ31612 363 aa10.38□□□□□ -0.75
HMGB1-206ENST00000405805 FNDC7Q5VTL7 733 aa10.38□□□□□ -0.75
HMGB1-206ENST00000405805 OR5AU1Q8NGC0 362 aa10.38□□□□□ -0.75
HMGB1-206ENST00000405805 RTBDNQ9BSG5 229 aaPredicted RBP10.38□□□□□ -0.75
HMGB1-206ENST00000405805 TRAPPC2LQ9UL33 140 aa10.38□□□□□ -0.75
HMGB1-206ENST00000405805 CLDN16Q9Y5I7 305 aa10.38□□□□□ -0.75
HMGB1-206ENST00000405805 A0A1W2PQD3 144 aa10.37□□□□□ -0.75
HMGB1-206ENST00000405805 DIRC3C9JPN6 131 aa10.37□□□□□ -0.75
HMGB1-206ENST00000405805 TCTAP57738 103 aa10.37□□□□□ -0.75
HMGB1-206ENST00000405805 SCGB2A2Q13296 93 aa10.37□□□□□ -0.75
HMGB1-206ENST00000405805 CHCHD2P9Q5T1J5 151 aaPredicted RBP10.37□□□□□ -0.75
HMGB1-206ENST00000405805 PNPLA5Q7Z6Z6 429 aaPredicted RBP10.37□□□□□ -0.75
HMGB1-206ENST00000405805 ZNF664Q8N3J9 261 aa10.37□□□□□ -0.75
HMGB1-206ENST00000405805 SPEM1Q8N4L4 309 aa10.37□□□□□ -0.75
HMGB1-206ENST00000405805 PP6455Q8WZ26 134 aa10.37□□□□□ -0.75
HMGB1-206ENST00000405805 NUDT16L1Q9BRJ7 211 aaKnown RBP10.37□□□□□ -0.75
HMGB1-206ENST00000405805 PCNX1Q96RV3 2341 aa10.37□□□□□ -0.75
HMGB1-206ENST00000405805 ISG15P05161 165 aa10.37□□□□□ -0.75
HMGB1-206ENST00000405805 BTF3P20290 206 aaKnown RBP10.37□□□□□ -0.75
HMGB1-206ENST00000405805 DMWDQ09019 674 aa10.37□□□□□ -0.75
HMGB1-206ENST00000405805 GABRA6Q16445 453 aa10.37□□□□□ -0.75
HMGB1-206ENST00000405805 CXorf66Q5JRM2 361 aaPredicted RBP10.37□□□□□ -0.75
HMGB1-206ENST00000405805 MOB1BQ7L9L4 216 aa10.37□□□□□ -0.75
HMGB1-206ENST00000405805 SLC25A45Q8N413 288 aa10.37□□□□□ -0.75
HMGB1-206ENST00000405805 RNF166Q96A37 237 aaPredicted RBP10.37□□□□□ -0.75
HMGB1-206ENST00000405805 ABHD14AQ9BUJ0 271 aa10.37□□□□□ -0.75
HMGB1-206ENST00000405805 PCNX3Q9H6A9 2034 aa10.37□□□□□ -0.75
HMGB1-206ENST00000405805 PKDREJQ9NTG1 2253 aa10.37□□□□□ -0.75
HMGB1-206ENST00000405805 A0A1B0GV72 72 aa10.37□□□□□ -0.75
HMGB1-206ENST00000405805 C3orf80F5H4A9 247 aa10.37□□□□□ -0.75
HMGB1-206ENST00000405805 CRISP2P16562 243 aa10.37□□□□□ -0.75
HMGB1-206ENST00000405805 WDR5BQ86VZ2 330 aa10.37□□□□□ -0.75
HMGB1-206ENST00000405805 WDFY1Q8IWB7 410 aa10.37□□□□□ -0.75
HMGB1-206ENST00000405805 SLC24A4Q8NFF2 622 aa10.37□□□□□ -0.75
HMGB1-206ENST00000405805 SLC25A43Q8WUT9 341 aaPredicted RBP10.37□□□□□ -0.75
HMGB1-206ENST00000405805 RNF2Q99496 336 aa10.37□□□□□ -0.75
HMGB1-206ENST00000405805 FAM173AQ9BQD7 235 aa10.37□□□□□ -0.75
HMGB1-206ENST00000405805 PCGF1Q9BSM1 259 aa10.37□□□□□ -0.75
HMGB1-206ENST00000405805 SNHG12Q9BXW3 62 aa10.37□□□□□ -0.75
HMGB1-206ENST00000405805 PLEKHA3Q9HB20 300 aa10.37□□□□□ -0.75
HMGB1-206ENST00000405805 OCIAD1Q9NX40 245 aa10.37□□□□□ -0.75
HMGB1-206ENST00000405805 SEMA5BQ9P283 1151 aa10.37□□□□□ -0.75
HMGB1-206ENST00000405805 CADP27708 2225 aa10.37□□□□□ -0.75
HMGB1-206ENST00000405805 IGKV1-9A0A0C4DH69 117 aa10.36□□□□□ -0.75
HMGB1-206ENST00000405805 C9JQL5 133 aa10.36□□□□□ -0.75
HMGB1-206ENST00000405805 IRF2P14316 349 aa10.36□□□□□ -0.75
HMGB1-206ENST00000405805 PLP1P60201 277 aa10.36□□□□□ -0.75
HMGB1-206ENST00000405805 ADAMTS17Q8TE56 1095 aa10.36□□□□□ -0.75
HMGB1-206ENST00000405805 RALYQ9UKM9 306 aaKnown RBP10.36□□□□□ -0.75
HMGB1-206ENST00000405805 M0R1X1 148 aa10.36□□□□□ -0.75
HMGB1-206ENST00000405805 SYNGR4O95473 234 aa10.36□□□□□ -0.75
HMGB1-206ENST00000405805 ATP6V0CP27449 155 aa10.36□□□□□ -0.75
HMGB1-206ENST00000405805 SULT1A2P50226 295 aa10.36□□□□□ -0.75
HMGB1-206ENST00000405805 SUCLG1P53597 346 aaKnown RBP10.36□□□□□ -0.75
HMGB1-206ENST00000405805 PLPPR5Q32ZL2 321 aa10.36□□□□□ -0.75
HMGB1-206ENST00000405805 SPINK9Q5DT21 86 aa10.36□□□□□ -0.75
HMGB1-206ENST00000405805 VWA1Q6PCB0 445 aa10.36□□□□□ -0.75
HMGB1-206ENST00000405805 OR6X1Q8NH79 312 aa10.36□□□□□ -0.75
HMGB1-206ENST00000405805 CPT1CQ8TCG5 803 aa10.36□□□□□ -0.75
HMGB1-206ENST00000405805 ZNF488Q96MN9 340 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 121.2 ms