RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 LRFN1Q9P244 771 aa17.9■□□□□ 0.46
CTCF-202ENST00000401394 CACNG5Q9UF02 275 aa17.9■□□□□ 0.46
CTCF-202ENST00000401394 TRIOBPQ9H2D6 2365 aa17.9■□□□□ 0.46
CTCF-202ENST00000401394 ZNF816-ZNF321PA0A0X1KG74 233 aa17.9■□□□□ 0.46
CTCF-202ENST00000401394 KIAA1324LA8MWY0 1029 aaPredicted RBP17.9■□□□□ 0.46
CTCF-202ENST00000401394 PRDX4Q13162 271 aa17.9■□□□□ 0.46
CTCF-202ENST00000401394 TESK1Q15569 626 aa17.9■□□□□ 0.46
CTCF-202ENST00000401394 LRP11Q86VZ4 500 aa17.9■□□□□ 0.46
CTCF-202ENST00000401394 C5orf49A4QMS7 147 aa17.89■□□□□ 0.45
CTCF-202ENST00000401394 PINLYPA6NC86 204 aa17.89■□□□□ 0.45
CTCF-202ENST00000401394 SELEP16581 610 aa17.89■□□□□ 0.45
CTCF-202ENST00000401394 IL2RGP31785 369 aa17.89■□□□□ 0.45
CTCF-202ENST00000401394 B3GALT5-AS1P59052 145 aa17.89■□□□□ 0.45
CTCF-202ENST00000401394 RAC1P63000 192 aa17.89■□□□□ 0.45
CTCF-202ENST00000401394 GAB2Q9UQC2 676 aa17.89■□□□□ 0.45
CTCF-202ENST00000401394 YKT6O15498 198 aa17.89■□□□□ 0.45
CTCF-202ENST00000401394 KLF7O75840 302 aaPredicted RBP17.89■□□□□ 0.45
CTCF-202ENST00000401394 IGKV1D-33P01593 117 aa17.89■□□□□ 0.45
CTCF-202ENST00000401394 IGKV1-33P01594 117 aa17.89■□□□□ 0.45
CTCF-202ENST00000401394 SELLP14151 372 aa17.89■□□□□ 0.45
CTCF-202ENST00000401394 P2RY6Q15077 328 aa17.89■□□□□ 0.45
CTCF-202ENST00000401394 PCSK4Q6UW60 755 aa17.89■□□□□ 0.45
CTCF-202ENST00000401394 RPS19BP1Q86WX3 136 aaKnown RBP17.89■□□□□ 0.45
CTCF-202ENST00000401394 VAMP5O95183 116 aa17.88■□□□□ 0.45
CTCF-202ENST00000401394 SRFP11831 508 aa17.88■□□□□ 0.45
CTCF-202ENST00000401394 UCP1P25874 307 aa17.88■□□□□ 0.45
CTCF-202ENST00000401394 ADIRFQ15847 76 aa17.88■□□□□ 0.45
CTCF-202ENST00000401394 RPUSD4Q96CM3 377 aaKnown RBP17.88■□□□□ 0.45
CTCF-202ENST00000401394 CABLES2Q9BTV7 478 aa17.88■□□□□ 0.45
CTCF-202ENST00000401394 A0A087X0M5 115 aa17.88■□□□□ 0.45
CTCF-202ENST00000401394 A0A1B0GX30 115 aa17.88■□□□□ 0.45
CTCF-202ENST00000401394 CST2P09228 141 aa17.88■□□□□ 0.45
CTCF-202ENST00000401394 GZMHP20718 246 aa17.88■□□□□ 0.45
CTCF-202ENST00000401394 SSR4P51571 173 aa17.88■□□□□ 0.45
CTCF-202ENST00000401394 TLE4Q04727 773 aa17.88■□□□□ 0.45
CTCF-202ENST00000401394 CA5BP1Q8WTZ4 195 aa17.88■□□□□ 0.45
CTCF-202ENST00000401394 RCC1LQ96I51 464 aaKnown RBP17.88■□□□□ 0.45
CTCF-202ENST00000401394 IMMP1LQ96LU5 166 aa17.88■□□□□ 0.45
CTCF-202ENST00000401394 GPR35Q9HC97 309 aa17.88■□□□□ 0.45
CTCF-202ENST00000401394 PRDM6Q9NQX0 595 aa17.88■□□□□ 0.45
CTCF-202ENST00000401394 DEPPQ9NTK1 212 aa17.88■□□□□ 0.45
CTCF-202ENST00000401394 C19orf25Q9UFG5 118 aaPredicted RBP17.88■□□□□ 0.45
CTCF-202ENST00000401394 OR14J1Q9UGF5 321 aa17.88■□□□□ 0.45
CTCF-202ENST00000401394 RHBDL1O75783 438 aa17.88■□□□□ 0.45
CTCF-202ENST00000401394 NAPSAO96009 420 aa17.88■□□□□ 0.45
CTCF-202ENST00000401394 NR2C1P13056 603 aa17.88■□□□□ 0.45
CTCF-202ENST00000401394 OR8B8Q15620 311 aa17.88■□□□□ 0.45
CTCF-202ENST00000401394 SPANXN5Q5MJ07 72 aa17.88■□□□□ 0.45
CTCF-202ENST00000401394 OR8G2PQ6IF36 304 aa17.88■□□□□ 0.45
CTCF-202ENST00000401394 CARFQ8N187 725 aa17.88■□□□□ 0.45
CTCF-202ENST00000401394 OR4X1Q8NH49 305 aa17.88■□□□□ 0.45
CTCF-202ENST00000401394 SGCZQ96LD1 299 aa17.88■□□□□ 0.45
CTCF-202ENST00000401394 LAMA5O15230 3695 aa17.88■□□□□ 0.45
CTCF-202ENST00000401394 A0A087WWC5 75 aa17.87■□□□□ 0.45
CTCF-202ENST00000401394 SPATA46Q5T0L3 261 aa17.87■□□□□ 0.45
CTCF-202ENST00000401394 SSX9Q7RTT3 188 aa17.87■□□□□ 0.45
CTCF-202ENST00000401394 TMPRSS7Q7RTY8 843 aa17.87■□□□□ 0.45
CTCF-202ENST00000401394 MISP3Q96FF7 219 aa17.87■□□□□ 0.45
CTCF-202ENST00000401394 A0A1B0GU03 582 aa17.87■□□□□ 0.45
CTCF-202ENST00000401394 DDTP30046 118 aa17.87■□□□□ 0.45
CTCF-202ENST00000401394 LINC00205P59089 165 aa17.87■□□□□ 0.45
CTCF-202ENST00000401394 SPINK9Q5DT21 86 aa17.87■□□□□ 0.45
CTCF-202ENST00000401394 TDHQ8IZJ6 230 aa17.87■□□□□ 0.45
CTCF-202ENST00000401394 HLA-CQ95604 372 aa17.87■□□□□ 0.45
CTCF-202ENST00000401394 RBMXL1Q96E39 390 aaKnown RBP17.87■□□□□ 0.45
CTCF-202ENST00000401394 GNPNAT1Q96EK6 184 aaPredicted RBP17.87■□□□□ 0.45
CTCF-202ENST00000401394 KNTC1P50748 2209 aa17.87■□□□□ 0.45
CTCF-202ENST00000401394 GPR179Q6PRD1 2367 aa17.87■□□□□ 0.45
CTCF-202ENST00000401394 A0A087WZY1 265 aa17.86■□□□□ 0.45
CTCF-202ENST00000401394 A0A1B0GUS0 222 aa17.86■□□□□ 0.45
CTCF-202ENST00000401394 BCL2P10415 239 aa17.86■□□□□ 0.45
CTCF-202ENST00000401394 RAC3P60763 192 aa17.86■□□□□ 0.45
CTCF-202ENST00000401394 ZXDAP98168 799 aa17.86■□□□□ 0.45
CTCF-202ENST00000401394 COL10A1Q03692 680 aa17.86■□□□□ 0.45
CTCF-202ENST00000401394 EIF3IQ13347 325 aaKnown RBP17.86■□□□□ 0.45
CTCF-202ENST00000401394 WDR5BQ86VZ2 330 aa17.86■□□□□ 0.45
CTCF-202ENST00000401394 UNKLQ9H9P5 680 aaKnown RBP17.86■□□□□ 0.45
CTCF-202ENST00000401394 ZDBF2Q9HCK1 2354 aa17.86■□□□□ 0.45
CTCF-202ENST00000401394 CELA3AP09093 270 aa17.86■□□□□ 0.45
CTCF-202ENST00000401394 EGR1P18146 543 aa17.86■□□□□ 0.45
CTCF-202ENST00000401394 F2RP25116 425 aa17.86■□□□□ 0.45
CTCF-202ENST00000401394 SLC35E3Q7Z769 313 aa17.86■□□□□ 0.45
CTCF-202ENST00000401394 C1orf87Q8N0U7 546 aa17.85■□□□□ 0.45
CTCF-202ENST00000401394 SPIN2AQ99865 258 aa17.85■□□□□ 0.45
CTCF-202ENST00000401394 SPIN2BQ9BPZ2 258 aa17.85■□□□□ 0.45
CTCF-202ENST00000401394 TFF1P04155 84 aa17.85■□□□□ 0.45
CTCF-202ENST00000401394 SERPINE2P07093 398 aa17.85■□□□□ 0.45
CTCF-202ENST00000401394 MMP7P09237 267 aaPredicted RBP17.85■□□□□ 0.45
CTCF-202ENST00000401394 TRIM61Q5EBN2 209 aa17.85■□□□□ 0.45
CTCF-202ENST00000401394 STX12Q86Y82 276 aa17.85■□□□□ 0.45
CTCF-202ENST00000401394 UBE2L5PA0A1B0GUS4 154 aa17.85■□□□□ 0.45
CTCF-202ENST00000401394 ZNF705GA8MUZ8 300 aaPredicted RBP17.85■□□□□ 0.45
CTCF-202ENST00000401394 IGKV1-5P01602 117 aa17.85■□□□□ 0.45
CTCF-202ENST00000401394 SDF2L1Q9HCN8 221 aa17.85■□□□□ 0.45
CTCF-202ENST00000401394 PLSCR2Q9NRY7 297 aa17.85■□□□□ 0.45
CTCF-202ENST00000401394 NCOR1O75376 2440 aa17.84■□□□□ 0.45
CTCF-202ENST00000401394 WDR1O75083 606 aa17.84■□□□□ 0.45
CTCF-202ENST00000401394 IFNA5P01569 189 aa17.84■□□□□ 0.45
CTCF-202ENST00000401394 ARF1P84077 181 aaKnown RBP17.84■□□□□ 0.45
CTCF-202ENST00000401394 OR4C12Q96R67 309 aa17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms