RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 KIAA1456Q9P272 454 aa10.36□□□□□ -0.75
CLIP3-201ENST00000360535 TMEM56-RWDD3S4R434 201 aa10.36□□□□□ -0.75
CLIP3-201ENST00000360535 CEBPZOSA8MTT3 80 aa10.36□□□□□ -0.75
CLIP3-201ENST00000360535 S100GP29377 79 aa10.36□□□□□ -0.75
CLIP3-201ENST00000360535 COL19A1Q14993 1142 aa10.36□□□□□ -0.75
CLIP3-201ENST00000360535 EDARADDQ8WWZ3 215 aa10.36□□□□□ -0.75
CLIP3-201ENST00000360535 CLDN23Q96B33 292 aa10.36□□□□□ -0.75
CLIP3-201ENST00000360535 GNPNAT1Q96EK6 184 aaPredicted RBP10.36□□□□□ -0.75
CLIP3-201ENST00000360535 TCEAL7Q9BRU2 100 aa10.36□□□□□ -0.75
CLIP3-201ENST00000360535 C1QTNF5Q9BXJ0 243 aa10.36□□□□□ -0.75
CLIP3-201ENST00000360535 GPR61Q9BZJ8 451 aa10.36□□□□□ -0.75
CLIP3-201ENST00000360535 RPRMQ9NS64 109 aa10.36□□□□□ -0.75
CLIP3-201ENST00000360535 KIR2DS1A0A191URI9 304 aa10.35□□□□□ -0.75
CLIP3-201ENST00000360535 CD300LBA8K4G0 201 aa10.35□□□□□ -0.75
CLIP3-201ENST00000360535 FOSL1P15407 271 aa10.35□□□□□ -0.75
CLIP3-201ENST00000360535 F2RP25116 425 aa10.35□□□□□ -0.75
CLIP3-201ENST00000360535 MAGEA5P43359 124 aa10.35□□□□□ -0.75
CLIP3-201ENST00000360535 KIR2DS4P43632 304 aa10.35□□□□□ -0.75
CLIP3-201ENST00000360535 PLGLB1Q02325 96 aa10.35□□□□□ -0.75
CLIP3-201ENST00000360535 KIR2DS1Q14954 304 aa10.35□□□□□ -0.75
CLIP3-201ENST00000360535 ELOBQ15370 118 aa10.35□□□□□ -0.75
CLIP3-201ENST00000360535 NMSQ5H8A3 153 aa10.35□□□□□ -0.75
CLIP3-201ENST00000360535 FAM185AQ8N0U4 392 aa10.35□□□□□ -0.75
CLIP3-201ENST00000360535 ATP5SQ99766 215 aa10.35□□□□□ -0.75
CLIP3-201ENST00000360535 OR51M1Q9H341 326 aa10.35□□□□□ -0.75
CLIP3-201ENST00000360535 UNKLQ9H9P5 680 aaKnown RBP10.35□□□□□ -0.75
CLIP3-201ENST00000360535 IL36GQ9NZH8 169 aa10.35□□□□□ -0.75
CLIP3-201ENST00000360535 OR14J1Q9UGF5 321 aa10.35□□□□□ -0.75
CLIP3-201ENST00000360535 YKT6O15498 198 aa10.35□□□□□ -0.75
CLIP3-201ENST00000360535 S100PP25815 95 aa10.35□□□□□ -0.75
CLIP3-201ENST00000360535 PAX6P26367 422 aa10.35□□□□□ -0.75
CLIP3-201ENST00000360535 CD200P41217 278 aa10.35□□□□□ -0.75
CLIP3-201ENST00000360535 PAX9P55771 341 aa10.35□□□□□ -0.75
CLIP3-201ENST00000360535 ID3Q02535 119 aa10.35□□□□□ -0.75
CLIP3-201ENST00000360535 TESK1Q15569 626 aa10.35□□□□□ -0.75
CLIP3-201ENST00000360535 PMS2CLQ68D20 193 aa10.35□□□□□ -0.75
CLIP3-201ENST00000360535 ZNF787Q6DD87 383 aa10.35□□□□□ -0.75
CLIP3-201ENST00000360535 TIPARPQ7Z3E1 657 aaKnown RBP10.35□□□□□ -0.75
CLIP3-201ENST00000360535 PNPLA5Q7Z6Z6 429 aaPredicted RBP10.35□□□□□ -0.75
CLIP3-201ENST00000360535 ZNF610Q8N9Z0 462 aa10.35□□□□□ -0.75
CLIP3-201ENST00000360535 REPIN1Q9BWE0 567 aaKnown RBP10.35□□□□□ -0.75
CLIP3-201ENST00000360535 SEBOXQ9HB31 216 aaPredicted RBP10.35□□□□□ -0.75
CLIP3-201ENST00000360535 TRAPPC2LQ9UL33 140 aa10.35□□□□□ -0.75
CLIP3-201ENST00000360535 ATP23Q9Y6H3 246 aa10.35□□□□□ -0.75
CLIP3-201ENST00000360535 UCP1P25874 307 aa10.35□□□□□ -0.75
CLIP3-201ENST00000360535 PLP2Q04941 152 aa10.35□□□□□ -0.75
CLIP3-201ENST00000360535 CEACAM21Q3KPI0 293 aa10.35□□□□□ -0.75
CLIP3-201ENST00000360535 FAM53AQ6NSI3 398 aaPredicted RBP10.35□□□□□ -0.75
CLIP3-201ENST00000360535 MCEMP1Q8IX19 187 aa10.35□□□□□ -0.75
CLIP3-201ENST00000360535 TMEM105Q8N8V8 129 aa10.35□□□□□ -0.75
CLIP3-201ENST00000360535 PLPPR1Q8TBJ4 325 aa10.35□□□□□ -0.75
CLIP3-201ENST00000360535 PSENENQ9NZ42 101 aa10.35□□□□□ -0.75
CLIP3-201ENST00000360535 ZNF391Q9UJN7 358 aa10.35□□□□□ -0.75
CLIP3-201ENST00000360535 ANKRD30BLA7E2S9 258 aa10.34□□□□□ -0.75
CLIP3-201ENST00000360535 DEGS1O15121 323 aa10.34□□□□□ -0.75
CLIP3-201ENST00000360535 SYNGR4O95473 234 aa10.34□□□□□ -0.75
CLIP3-201ENST00000360535 NAPSAO96009 420 aa10.34□□□□□ -0.75
CLIP3-201ENST00000360535 BMP5P22003 454 aa10.34□□□□□ -0.75
CLIP3-201ENST00000360535 NKX6-1P78426 367 aaPredicted RBP10.34□□□□□ -0.75
CLIP3-201ENST00000360535 ZXDAP98168 799 aa10.34□□□□□ -0.75
CLIP3-201ENST00000360535 ARL16Q0P5N6 197 aa10.34□□□□□ -0.75
CLIP3-201ENST00000360535 SPINK9Q5DT21 86 aa10.34□□□□□ -0.75
CLIP3-201ENST00000360535 ABLIM2Q6H8Q1 611 aa10.34□□□□□ -0.75
CLIP3-201ENST00000360535 CLDND2Q8NHS1 167 aa10.34□□□□□ -0.75
CLIP3-201ENST00000360535 CT55Q8WUE5 264 aa10.34□□□□□ -0.75
CLIP3-201ENST00000360535 S100PBPQ96BU1 408 aa10.34□□□□□ -0.75
CLIP3-201ENST00000360535 ADGRG7Q96K78 797 aa10.34□□□□□ -0.75
CLIP3-201ENST00000360535 PLSCR2Q9NRY7 297 aa10.34□□□□□ -0.75
CLIP3-201ENST00000360535 CYTIPO60759 359 aa10.34□□□□□ -0.75
CLIP3-201ENST00000360535 RBMXL2O75526 392 aaKnown RBP10.34□□□□□ -0.75
CLIP3-201ENST00000360535 TAS2R30P59541 319 aa10.34□□□□□ -0.75
CLIP3-201ENST00000360535 PYY3Q5JQD4 70 aa10.34□□□□□ -0.75
CLIP3-201ENST00000360535 DCAF12Q5T6F0 453 aa10.34□□□□□ -0.75
CLIP3-201ENST00000360535 CXorf67Q86X51 503 aaPredicted RBP10.34□□□□□ -0.75
CLIP3-201ENST00000360535 ZNF808Q8N4W9 903 aaPredicted RBP10.34□□□□□ -0.75
CLIP3-201ENST00000360535 ZNF383Q8NA42 475 aa10.34□□□□□ -0.75
CLIP3-201ENST00000360535 SSX3Q99909 188 aa10.34□□□□□ -0.75
CLIP3-201ENST00000360535 PRDM6Q9NQX0 595 aa10.34□□□□□ -0.75
CLIP3-201ENST00000360535 CEP250Q9BV73 2442 aa10.34□□□□□ -0.75
CLIP3-201ENST00000360535 FABP4P15090 132 aa10.34□□□□□ -0.75
CLIP3-201ENST00000360535 CEBPDP49716 269 aaPredicted RBP10.34□□□□□ -0.75
CLIP3-201ENST00000360535 RIPPLY2Q5TAB7 128 aa10.34□□□□□ -0.75
CLIP3-201ENST00000360535 FAM58AQ8N1B3 248 aa10.34□□□□□ -0.75
CLIP3-201ENST00000360535 MRPL30Q8TCC3 161 aaKnown RBP10.34□□□□□ -0.75
CLIP3-201ENST00000360535 PRDM14Q9GZV8 571 aa10.34□□□□□ -0.75
CLIP3-201ENST00000360535 C11orf1Q9H5F2 150 aa10.34□□□□□ -0.75
CLIP3-201ENST00000360535 GAR1Q9NY12 217 aaKnown RBP10.34□□□□□ -0.75
CLIP3-201ENST00000360535 OR2W1Q9Y3N9 320 aa10.34□□□□□ -0.75
CLIP3-201ENST00000360535 UBE2L5PA0A1B0GUS4 154 aa10.33□□□□□ -0.76
CLIP3-201ENST00000360535 TFF1P04155 84 aa10.33□□□□□ -0.76
CLIP3-201ENST00000360535 HLA-DRB3P79483 266 aa10.33□□□□□ -0.76
CLIP3-201ENST00000360535 SSX7Q7RTT5 188 aa10.33□□□□□ -0.76
CLIP3-201ENST00000360535 APOBEC3DQ96AK3 386 aaPredicted RBP10.33□□□□□ -0.76
CLIP3-201ENST00000360535 PLPPR2Q96GM1 343 aa10.33□□□□□ -0.76
CLIP3-201ENST00000360535 RHOVQ96L33 236 aa10.33□□□□□ -0.76
CLIP3-201ENST00000360535 PRSS50Q9UI38 385 aa10.33□□□□□ -0.76
CLIP3-201ENST00000360535 TRAV24A0A0B4J272 114 aa10.33□□□□□ -0.76
CLIP3-201ENST00000360535 IFITM10A6NMD0 228 aa10.33□□□□□ -0.76
CLIP3-201ENST00000360535 PPIHO43447 177 aaKnown RBP10.33□□□□□ -0.76
CLIP3-201ENST00000360535 GRPP07492 148 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms