RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 GALMQ96C23 342 aa15.52■□□□□ 0.08
CLN3-204ENST00000357857 C14orf79Q96F83 325 aa15.52■□□□□ 0.08
CLN3-204ENST00000357857 OR6C3Q9NZP0 311 aa15.52■□□□□ 0.08
CLN3-204ENST00000357857 OR1A1Q9P1Q5 309 aa15.52■□□□□ 0.08
CLN3-204ENST00000357857 SLC25A10Q9UBX3 287 aaPredicted RBP15.52■□□□□ 0.08
CLN3-204ENST00000357857 A1L4Q6 167 aa15.51■□□□□ 0.07
CLN3-204ENST00000357857 CLEC18AA5D8T8 446 aa15.51■□□□□ 0.07
CLN3-204ENST00000357857 HSPA12AO43301 675 aa15.51■□□□□ 0.07
CLN3-204ENST00000357857 COX6B1P14854 86 aa15.51■□□□□ 0.07
CLN3-204ENST00000357857 GZMHP20718 246 aa15.51■□□□□ 0.07
CLN3-204ENST00000357857 CD300CQ08708 224 aa15.51■□□□□ 0.07
CLN3-204ENST00000357857 DHRS2Q13268 280 aa15.51■□□□□ 0.07
CLN3-204ENST00000357857 PPP1R1AQ13522 171 aa15.51■□□□□ 0.07
CLN3-204ENST00000357857 FCN2Q15485 313 aa15.51■□□□□ 0.07
CLN3-204ENST00000357857 CR1LQ2VPA4 569 aa15.51■□□□□ 0.07
CLN3-204ENST00000357857 CLEC18BQ6UXF7 455 aa15.51■□□□□ 0.07
CLN3-204ENST00000357857 MUC20Q8N307 709 aaPredicted RBP15.51■□□□□ 0.07
CLN3-204ENST00000357857 ZNF565Q8N9K5 539 aa15.51■□□□□ 0.07
CLN3-204ENST00000357857 CLEC18CQ8NCF0 446 aa15.51■□□□□ 0.07
CLN3-204ENST00000357857 ARL11Q969Q4 196 aa15.51■□□□□ 0.07
CLN3-204ENST00000357857 TMEM230Q96A57 120 aa15.51■□□□□ 0.07
CLN3-204ENST00000357857 PLEKHF2Q9H8W4 249 aa15.51■□□□□ 0.07
CLN3-204ENST00000357857 KAAG1Q9UBP8 84 aa15.51■□□□□ 0.07
CLN3-204ENST00000357857 OPN4Q9UHM6 478 aa15.51■□□□□ 0.07
CLN3-204ENST00000357857 LRBAP50851 2863 aa15.51■□□□□ 0.07
CLN3-204ENST00000357857 MEX3AA1L020 520 aaKnown RBP15.51■□□□□ 0.07
CLN3-204ENST00000357857 SPINT2O43291 252 aa15.51■□□□□ 0.07
CLN3-204ENST00000357857 IGHV2-70P01814 119 aa15.51■□□□□ 0.07
CLN3-204ENST00000357857 HLA-AP01891 365 aaKnown RBP15.51■□□□□ 0.07
CLN3-204ENST00000357857 PLA2G2AP14555 144 aa15.51■□□□□ 0.07
CLN3-204ENST00000357857 NDUFB7P17568 137 aa15.51■□□□□ 0.07
CLN3-204ENST00000357857 ZBTB25P24278 435 aa15.51■□□□□ 0.07
CLN3-204ENST00000357857 SSTR5P35346 364 aa15.51■□□□□ 0.07
CLN3-204ENST00000357857 DHODHQ02127 395 aa15.51■□□□□ 0.07
CLN3-204ENST00000357857 TMEM128Q5BJH2 165 aa15.51■□□□□ 0.07
CLN3-204ENST00000357857 LYG2Q86SG7 212 aa15.51■□□□□ 0.07
CLN3-204ENST00000357857 SLC38A6Q8IZM9 456 aa15.51■□□□□ 0.07
CLN3-204ENST00000357857 OR2W1Q9Y3N9 320 aa15.51■□□□□ 0.07
CLN3-204ENST00000357857 C15orf65H3BRN8 121 aa15.5■□□□□ 0.07
CLN3-204ENST00000357857 NDUFB3O43676 98 aa15.5■□□□□ 0.07
CLN3-204ENST00000357857 HEXAP06865 529 aa15.5■□□□□ 0.07
CLN3-204ENST00000357857 LRRC10Q5BKY1 277 aa15.5■□□□□ 0.07
CLN3-204ENST00000357857 SP5Q6BEB4 398 aaPredicted RBP15.5■□□□□ 0.07
CLN3-204ENST00000357857 FGFRL1Q8N441 504 aa15.5■□□□□ 0.07
CLN3-204ENST00000357857 RSRP1Q9BUV0 290 aa15.5■□□□□ 0.07
CLN3-204ENST00000357857 C9orf170A2RU37 121 aa15.49■□□□□ 0.07
CLN3-204ENST00000357857 A8MV72 311 aaPredicted RBP15.49■□□□□ 0.07
CLN3-204ENST00000357857 J3QKU1 62 aa15.49■□□□□ 0.07
CLN3-204ENST00000357857 SULT1A3P0DMM9 295 aa15.49■□□□□ 0.07
CLN3-204ENST00000357857 SULT1A4P0DMN0 295 aa15.49■□□□□ 0.07
CLN3-204ENST00000357857 VAMP1P23763 118 aa15.49■□□□□ 0.07
CLN3-204ENST00000357857 ABCA11PQ4W5N1 156 aa15.49■□□□□ 0.07
CLN3-204ENST00000357857 LPCAT3Q6P1A2 487 aa15.49■□□□□ 0.07
CLN3-204ENST00000357857 OR11H7Q8NGC8 314 aa15.49■□□□□ 0.07
CLN3-204ENST00000357857 SECTM1Q8WVN6 248 aa15.49■□□□□ 0.07
CLN3-204ENST00000357857 TIMD4Q96H15 378 aa15.49■□□□□ 0.07
CLN3-204ENST00000357857 CHODLQ9H9P2 273 aa15.49■□□□□ 0.07
CLN3-204ENST00000357857 RDH8Q9NYR8 311 aa15.49■□□□□ 0.07
CLN3-204ENST00000357857 CTSZQ9UBR2 303 aa15.49■□□□□ 0.07
CLN3-204ENST00000357857 USF3Q68DE3 2245 aa15.48■□□□□ 0.07
CLN3-204ENST00000357857 TRGV10A0A0A0MS01 117 aa15.48■□□□□ 0.07
CLN3-204ENST00000357857 IGKV1D-13A0A0B4J2D9 117 aa15.48■□□□□ 0.07
CLN3-204ENST00000357857 OVOL3O00110 214 aa15.48■□□□□ 0.07
CLN3-204ENST00000357857 F12P00748 615 aaPredicted RBP15.48■□□□□ 0.07
CLN3-204ENST00000357857 HNRNPCP07910 306 aaKnown RBP eCLIP15.48■□□□□ 0.07
CLN3-204ENST00000357857 IGKV1-13P0DP09 117 aa15.48■□□□□ 0.07
CLN3-204ENST00000357857 CEACAM6P40199 344 aa15.48■□□□□ 0.07
CLN3-204ENST00000357857 EFNA4P52798 201 aa15.48■□□□□ 0.07
CLN3-204ENST00000357857 CD83Q01151 205 aa15.48■□□□□ 0.07
CLN3-204ENST00000357857 AVPI1Q5T686 147 aa15.48■□□□□ 0.07
CLN3-204ENST00000357857 RFESDQ8TAC1 157 aa15.48■□□□□ 0.07
CLN3-204ENST00000357857 RAB1CQ92928 201 aa15.48■□□□□ 0.07
CLN3-204ENST00000357857 ST6GAL2Q96JF0 529 aa15.48■□□□□ 0.07
CLN3-204ENST00000357857 SLC5A7Q9GZV3 580 aa15.48■□□□□ 0.07
CLN3-204ENST00000357857 DVL1O14640 695 aa15.48■□□□□ 0.07
CLN3-204ENST00000357857 PPIHO43447 177 aaKnown RBP15.48■□□□□ 0.07
CLN3-204ENST00000357857 FCN3O75636 299 aa15.48■□□□□ 0.07
CLN3-204ENST00000357857 PIGPP57054 158 aa15.48■□□□□ 0.07
CLN3-204ENST00000357857 HTD2P86397 168 aa15.48■□□□□ 0.07
CLN3-204ENST00000357857 C12orf45Q8N5I9 185 aaPredicted RBP15.48■□□□□ 0.07
CLN3-204ENST00000357857 OR52L2PQ8NGH6 319 aa15.48■□□□□ 0.07
CLN3-204ENST00000357857 NINJ1Q92982 152 aa15.48■□□□□ 0.07
CLN3-204ENST00000357857 ZNF486Q96H40 463 aaPredicted RBP15.48■□□□□ 0.07
CLN3-204ENST00000357857 RAB9BQ9NP90 201 aa15.48■□□□□ 0.07
CLN3-204ENST00000357857 CALYQ9NYX4 217 aa15.48■□□□□ 0.07
CLN3-204ENST00000357857 DOCK11Q5JSL3 2073 aa15.47■□□□□ 0.07
CLN3-204ENST00000357857 hADV38S2A0JD32 116 aa15.47■□□□□ 0.07
CLN3-204ENST00000357857 NDUFS7O75251 213 aa15.47■□□□□ 0.07
CLN3-204ENST00000357857 SFT2D2O95562 160 aa15.47■□□□□ 0.07
CLN3-204ENST00000357857 CGB3P0DN86 165 aa15.47■□□□□ 0.07
CLN3-204ENST00000357857 CGB7P0DN87 165 aa15.47■□□□□ 0.07
CLN3-204ENST00000357857 LUMP51884 338 aaPredicted RBP15.47■□□□□ 0.07
CLN3-204ENST00000357857 MEF2CQ06413 473 aaPredicted RBP15.47■□□□□ 0.07
CLN3-204ENST00000357857 PHLDA2Q53GA4 152 aa15.47■□□□□ 0.07
CLN3-204ENST00000357857 TCF23Q7RTU1 214 aa15.47■□□□□ 0.07
CLN3-204ENST00000357857 UXS1Q8NBZ7 420 aa15.47■□□□□ 0.07
CLN3-204ENST00000357857 OR10V1Q8NGI7 309 aa15.47■□□□□ 0.07
CLN3-204ENST00000357857 CASTOR1Q8WTX7 329 aa15.47■□□□□ 0.07
CLN3-204ENST00000357857 IGFBPL1Q8WX77 278 aa15.47■□□□□ 0.07
CLN3-204ENST00000357857 CORO2AQ92828 525 aa15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms