RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 IGKV3-15P01624 115 aa12.57□□□□□ -0.4
CLCNKA-201ENST00000331433 SPP1P10451 314 aa12.57□□□□□ -0.4
CLCNKA-201ENST00000331433 CBR1P16152 277 aa12.57□□□□□ -0.4
CLCNKA-201ENST00000331433 COX5AP20674 150 aa12.57□□□□□ -0.4
CLCNKA-201ENST00000331433 CD80P33681 288 aa12.57□□□□□ -0.4
CLCNKA-201ENST00000331433 TESK1Q15569 626 aa12.57□□□□□ -0.4
CLCNKA-201ENST00000331433 OR10V1Q8NGI7 309 aa12.57□□□□□ -0.4
CLCNKA-201ENST00000331433 CARHSP1Q9Y2V2 147 aaKnown RBP12.57□□□□□ -0.4
CLCNKA-201ENST00000331433 DIDO1Q9BTC0 2240 aaKnown RBP12.57□□□□□ -0.4
CLCNKA-201ENST00000331433 PRR33A8MZF0 331 aa12.56□□□□□ -0.4
CLCNKA-201ENST00000331433 PROB1E7EW31 1015 aa12.56□□□□□ -0.4
CLCNKA-201ENST00000331433 RNASEK-C17orf49H0YIS7 233 aa12.56□□□□□ -0.4
CLCNKA-201ENST00000331433 WNT9BO14905 357 aa12.56□□□□□ -0.4
CLCNKA-201ENST00000331433 HSPA12AO43301 675 aa12.56□□□□□ -0.4
CLCNKA-201ENST00000331433 WDR1O75083 606 aa12.56□□□□□ -0.4
CLCNKA-201ENST00000331433 TMEM50AO95807 157 aa12.56□□□□□ -0.4
CLCNKA-201ENST00000331433 IGLV2-14P01704 120 aa12.56□□□□□ -0.4
CLCNKA-201ENST00000331433 SEC11BP0C7V7 166 aa12.56□□□□□ -0.4
CLCNKA-201ENST00000331433 PSG2P11465 335 aa12.56□□□□□ -0.4
CLCNKA-201ENST00000331433 EPHA1P21709 976 aa12.56□□□□□ -0.4
CLCNKA-201ENST00000331433 MDH2P40926 338 aaKnown RBP12.56□□□□□ -0.4
CLCNKA-201ENST00000331433 ZNF616Q08AN1 781 aa12.56□□□□□ -0.4
CLCNKA-201ENST00000331433 ZNF146Q15072 292 aa12.56□□□□□ -0.4
CLCNKA-201ENST00000331433 ACSF3Q4G176 576 aaPredicted RBP12.56□□□□□ -0.4
CLCNKA-201ENST00000331433 RFNGQ9Y644 331 aa12.56□□□□□ -0.4
CLCNKA-201ENST00000331433 SFTA3P0C7M3 94 aa12.56□□□□□ -0.4
CLCNKA-201ENST00000331433 DANCRP0C864 163 aa12.56□□□□□ -0.4
CLCNKA-201ENST00000331433 PVALBP20472 110 aaPredicted RBP12.56□□□□□ -0.4
CLCNKA-201ENST00000331433 IZUMO4Q1ZYL8 232 aa12.56□□□□□ -0.4
CLCNKA-201ENST00000331433 OPN3Q9H1Y3 402 aaPredicted RBP12.56□□□□□ -0.4
CLCNKA-201ENST00000331433 TREM2Q9NZC2 230 aa12.56□□□□□ -0.4
CLCNKA-201ENST00000331433 AKAP13Q12802 2813 aa12.56□□□□□ -0.4
CLCNKA-201ENST00000331433 DUXBA0A1W2PPF3 345 aa12.55□□□□□ -0.4
CLCNKA-201ENST00000331433 CLEC18AA5D8T8 446 aa12.55□□□□□ -0.4
CLCNKA-201ENST00000331433 SH2D1BO14796 132 aa12.55□□□□□ -0.4
CLCNKA-201ENST00000331433 PSPNO60542 156 aa12.55□□□□□ -0.4
CLCNKA-201ENST00000331433 CECR9P0C854 216 aa12.55□□□□□ -0.4
CLCNKA-201ENST00000331433 NPBWR1P48145 328 aa12.55□□□□□ -0.4
CLCNKA-201ENST00000331433 MIDNQ504T8 468 aa12.55□□□□□ -0.4
CLCNKA-201ENST00000331433 MOB1BQ7L9L4 216 aa12.55□□□□□ -0.4
CLCNKA-201ENST00000331433 CBLN2Q8IUK8 224 aa12.55□□□□□ -0.4
CLCNKA-201ENST00000331433 CLEC18CQ8NCF0 446 aa12.55□□□□□ -0.4
CLCNKA-201ENST00000331433 TMEM171Q8WVE6 324 aa12.55□□□□□ -0.4
CLCNKA-201ENST00000331433 SEC11CQ9BY50 192 aa12.55□□□□□ -0.4
CLCNKA-201ENST00000331433 LYRM2Q9NU23 88 aaPredicted RBP12.55□□□□□ -0.4
CLCNKA-201ENST00000331433 TAAR3PQ9P1P4 343 aa12.55□□□□□ -0.4
CLCNKA-201ENST00000331433 PPP1R3CQ9UQK1 317 aa12.55□□□□□ -0.4
CLCNKA-201ENST00000331433 CADP27708 2225 aa12.55□□□□□ -0.4
CLCNKA-201ENST00000331433 CST7O76096 145 aa12.55□□□□□ -0.4
CLCNKA-201ENST00000331433 CNOT4O95628 575 aaKnown RBP12.55□□□□□ -0.4
CLCNKA-201ENST00000331433 HAND1O96004 215 aa12.55□□□□□ -0.4
CLCNKA-201ENST00000331433 TFF1P04155 84 aa12.55□□□□□ -0.4
CLCNKA-201ENST00000331433 CD5P06127 495 aa12.55□□□□□ -0.4
CLCNKA-201ENST00000331433 SERPINE2P07093 398 aa12.55□□□□□ -0.4
CLCNKA-201ENST00000331433 S100GP29377 79 aa12.55□□□□□ -0.4
CLCNKA-201ENST00000331433 FABP6P51161 128 aa12.55□□□□□ -0.4
CLCNKA-201ENST00000331433 VAMP2P63027 116 aa12.55□□□□□ -0.4
CLCNKA-201ENST00000331433 ID3Q02535 119 aa12.55□□□□□ -0.4
CLCNKA-201ENST00000331433 TMEM252Q8N6L7 170 aa12.55□□□□□ -0.4
CLCNKA-201ENST00000331433 ZNF610Q8N9Z0 462 aa12.55□□□□□ -0.4
CLCNKA-201ENST00000331433 LYPD6BQ8NI32 183 aa12.55□□□□□ -0.4
CLCNKA-201ENST00000331433 DKK4Q9UBT3 224 aa12.55□□□□□ -0.4
CLCNKA-201ENST00000331433 PURGQ9UJV8 347 aaKnown RBP12.55□□□□□ -0.4
CLCNKA-201ENST00000331433 RBM7Q9Y580 266 aaKnown RBP12.55□□□□□ -0.4
CLCNKA-201ENST00000331433 NPIPB11E5RHQ5 1161 aa12.54□□□□□ -0.4
CLCNKA-201ENST00000331433 TSPAN15O95858 294 aa12.54□□□□□ -0.4
CLCNKA-201ENST00000331433 PRH1P02810 166 aa12.54□□□□□ -0.4
CLCNKA-201ENST00000331433 CAMLGP49069 296 aa12.54□□□□□ -0.4
CLCNKA-201ENST00000331433 PRAMEF6Q5VXH4 476 aa12.54□□□□□ -0.4
CLCNKA-201ENST00000331433 ODF3L1Q8IXM7 274 aa12.54□□□□□ -0.4
CLCNKA-201ENST00000331433 C11orf53Q8IXP5 236 aa12.54□□□□□ -0.4
CLCNKA-201ENST00000331433 SPAG16Q8N0X2 631 aa12.54□□□□□ -0.4
CLCNKA-201ENST00000331433 TMEM217Q8N7C4 229 aa12.54□□□□□ -0.4
CLCNKA-201ENST00000331433 OR8G5Q8NG78 346 aa12.54□□□□□ -0.4
CLCNKA-201ENST00000331433 MSL2Q9HCI7 577 aa12.54□□□□□ -0.4
CLCNKA-201ENST00000331433 KCNS2Q9ULS6 477 aa12.54□□□□□ -0.4
CLCNKA-201ENST00000331433 CEP250Q9BV73 2442 aa12.54□□□□□ -0.4
CLCNKA-201ENST00000331433 A6NLC8 198 aa12.54□□□□□ -0.4
CLCNKA-201ENST00000331433 TMEM210A6NLX4 147 aa12.54□□□□□ -0.4
CLCNKA-201ENST00000331433 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.54□□□□□ -0.4
CLCNKA-201ENST00000331433 CHST1O43916 411 aa12.54□□□□□ -0.4
CLCNKA-201ENST00000331433 TNFSF13O75888 250 aa12.54□□□□□ -0.4
CLCNKA-201ENST00000331433 TMEM182Q6ZP80 229 aaPredicted RBP12.54□□□□□ -0.4
CLCNKA-201ENST00000331433 IL22RA2Q969J5 263 aa12.54□□□□□ -0.4
CLCNKA-201ENST00000331433 GPR146Q96CH1 333 aa12.54□□□□□ -0.4
CLCNKA-201ENST00000331433 PLEKHF2Q9H8W4 249 aa12.54□□□□□ -0.4
CLCNKA-201ENST00000331433 UFSP2Q9NUQ7 469 aa12.54□□□□□ -0.4
CLCNKA-201ENST00000331433 LUZP4Q9P127 313 aa12.54□□□□□ -0.4
CLCNKA-201ENST00000331433 CACFD1Q9UGQ2 172 aa12.54□□□□□ -0.4
CLCNKA-201ENST00000331433 TIMM8AO60220 97 aaPredicted RBP12.53□□□□□ -0.4
CLCNKA-201ENST00000331433 IGKV1-39P01597 117 aa12.53□□□□□ -0.4
CLCNKA-201ENST00000331433 IGKV1D-39P04432 117 aa12.53□□□□□ -0.4
CLCNKA-201ENST00000331433 HOXB1P14653 301 aaPredicted RBP12.53□□□□□ -0.4
CLCNKA-201ENST00000331433 ZNF16P17020 682 aaPredicted RBP12.53□□□□□ -0.4
CLCNKA-201ENST00000331433 CEACAM6P40199 344 aa12.53□□□□□ -0.4
CLCNKA-201ENST00000331433 SHEQ5VZ18 495 aa12.53□□□□□ -0.4
CLCNKA-201ENST00000331433 FAM53AQ6NSI3 398 aaPredicted RBP12.53□□□□□ -0.4
CLCNKA-201ENST00000331433 Q6ZR03 302 aa12.53□□□□□ -0.4
CLCNKA-201ENST00000331433 CLRN3Q8NCR9 226 aa12.53□□□□□ -0.4
CLCNKA-201ENST00000331433 C1orf162Q8NEQ5 155 aaPredicted RBP12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms