RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 HIF1ANQ9NWT6 349 aa14.98□□□□□ -0.01
HMGA1-201ENST00000311487 B4DSR2 109 aa14.98□□□□□ -0.01
HMGA1-201ENST00000311487 MFNGO00587 321 aa14.98□□□□□ -0.01
HMGA1-201ENST00000311487 GLP1RP43220 463 aa14.98□□□□□ -0.01
HMGA1-201ENST00000311487 NPY4RP50391 375 aa14.98□□□□□ -0.01
HMGA1-201ENST00000311487 ARFRP1Q13795 201 aa14.98□□□□□ -0.01
HMGA1-201ENST00000311487 RBM39Q14498 530 aaKnown RBP14.98□□□□□ -0.01
HMGA1-201ENST00000311487 LTC4SQ16873 150 aa14.98□□□□□ -0.01
HMGA1-201ENST00000311487 ZNF260Q3ZCT1 412 aa14.98□□□□□ -0.01
HMGA1-201ENST00000311487 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP14.98□□□□□ -0.018e-8■■■□□ 18
HMGA1-201ENST00000311487 ZNF497Q6ZNH5 498 aa14.98□□□□□ -0.01
HMGA1-201ENST00000311487 PDZD9Q8IXQ8 264 aa14.98□□□□□ -0.01
HMGA1-201ENST00000311487 LINC01356Q8N9X3 169 aa14.98□□□□□ -0.01
HMGA1-201ENST00000311487 RFESDQ8TAC1 157 aa14.98□□□□□ -0.01
HMGA1-201ENST00000311487 NUDT16L1Q9BRJ7 211 aaKnown RBP14.98□□□□□ -0.01
HMGA1-201ENST00000311487 ODAMA1E959 279 aa14.97□□□□□ -0.01
HMGA1-201ENST00000311487 FOXH1O75593 365 aa14.97□□□□□ -0.01
HMGA1-201ENST00000311487 FAM53AQ6NSI3 398 aaPredicted RBP14.97□□□□□ -0.01
HMGA1-201ENST00000311487 TCTE3Q8IZS6 198 aa14.97□□□□□ -0.01
HMGA1-201ENST00000311487 DEDD2Q8WXF8 326 aa14.97□□□□□ -0.01
HMGA1-201ENST00000311487 ZNF486Q96H40 463 aaPredicted RBP14.97□□□□□ -0.01
HMGA1-201ENST00000311487 CMSS1Q9BQ75 279 aaKnown RBP14.97□□□□□ -0.01
HMGA1-201ENST00000311487 SEBOXQ9HB31 216 aaPredicted RBP14.97□□□□□ -0.01
HMGA1-201ENST00000311487 TAS2R8Q9NYW2 309 aa14.97□□□□□ -0.01
HMGA1-201ENST00000311487 TRAPPC2LQ9UL33 140 aa14.97□□□□□ -0.01
HMGA1-201ENST00000311487 SONP18583 2426 aaKnown RBP14.97□□□□□ -0.01
HMGA1-201ENST00000311487 FAM172BPA6NC97 362 aa14.96□□□□□ -0.01
HMGA1-201ENST00000311487 SULT1C2O00338 296 aa14.96□□□□□ -0.01
HMGA1-201ENST00000311487 CSF1P09603 554 aa14.96□□□□□ -0.01
HMGA1-201ENST00000311487 MRPL30Q8TCC3 161 aaKnown RBP14.96□□□□□ -0.01
HMGA1-201ENST00000311487 GIMAP1Q8WWP7 306 aa14.96□□□□□ -0.01
HMGA1-201ENST00000311487 C18orf12Q96KH6 178 aa14.96□□□□□ -0.01
HMGA1-201ENST00000311487 HSF4Q9ULV5 492 aa14.96□□□□□ -0.01
HMGA1-201ENST00000311487 FLVCR2Q9UPI3 526 aa14.96□□□□□ -0.01
HMGA1-201ENST00000311487 IGHV3-7P01780 117 aa14.96□□□□□ -0.02
HMGA1-201ENST00000311487 CSN2P05814 226 aa14.96□□□□□ -0.02
HMGA1-201ENST00000311487 SSTR5P35346 364 aa14.96□□□□□ -0.02
HMGA1-201ENST00000311487 PAX2Q02962 417 aa14.96□□□□□ -0.02
HMGA1-201ENST00000311487 SSBP1Q04837 148 aaKnown RBP14.96□□□□□ -0.02
HMGA1-201ENST00000311487 UTF1Q5T230 341 aa14.96□□□□□ -0.02
HMGA1-201ENST00000311487 SPNS3Q6ZMD2 512 aa14.96□□□□□ -0.02
HMGA1-201ENST00000311487 OR4C16Q8NGL9 310 aa14.96□□□□□ -0.02
HMGA1-201ENST00000311487 TMEM186Q96B77 213 aa14.96□□□□□ -0.02
HMGA1-201ENST00000311487 ST6GALNAC5Q9BVH7 336 aa14.96□□□□□ -0.02
HMGA1-201ENST00000311487 DSCAML1Q8TD84 2053 aa14.95□□□□□ -0.02
HMGA1-201ENST00000311487 TMEM30CPA0ZSE6 113 aa14.95□□□□□ -0.02
HMGA1-201ENST00000311487 SSX5O60225 188 aa14.95□□□□□ -0.02
HMGA1-201ENST00000311487 PEX14O75381 377 aa14.95□□□□□ -0.02
HMGA1-201ENST00000311487 MMP23AO75900 390 aa14.95□□□□□ -0.02
HMGA1-201ENST00000311487 LPLP06858 475 aa14.95□□□□□ -0.02
HMGA1-201ENST00000311487 CD99P14209 185 aa14.95□□□□□ -0.02
HMGA1-201ENST00000311487 FCN2Q15485 313 aa14.95□□□□□ -0.02
HMGA1-201ENST00000311487 CYB5R2Q6BCY4 276 aa14.95□□□□□ -0.02
HMGA1-201ENST00000311487 IQCF2Q8IXL9 164 aa14.95□□□□□ -0.02
HMGA1-201ENST00000311487 GVQW1Q8N7I0 195 aa14.95□□□□□ -0.02
HMGA1-201ENST00000311487 OR51J1Q9H342 316 aa14.95□□□□□ -0.02
HMGA1-201ENST00000311487 GSX1Q9H4S2 264 aaPredicted RBP14.95□□□□□ -0.02
HMGA1-201ENST00000311487 SCPEP1Q9HB40 452 aa14.95□□□□□ -0.02
HMGA1-201ENST00000311487 F8P00451 2351 aa14.95□□□□□ -0.02
HMGA1-201ENST00000311487 IGHV2-70DA0A0C4DH43 119 aa14.94□□□□□ -0.02
HMGA1-201ENST00000311487 A8MXK9 166 aa14.94□□□□□ -0.02
HMGA1-201ENST00000311487 FAUP35544 74 aaKnown RBP14.94□□□□□ -0.02
HMGA1-201ENST00000311487 GNG2P59768 71 aa14.94□□□□□ -0.02
HMGA1-201ENST00000311487 MRPS15P82914 257 aaKnown RBP14.94□□□□□ -0.02
HMGA1-201ENST00000311487 KRTAP1-1Q07627 177 aa14.94□□□□□ -0.02
HMGA1-201ENST00000311487 FAM189A2Q15884 450 aa14.94□□□□□ -0.02
HMGA1-201ENST00000311487 DCAF12L2Q5VW00 463 aa14.94□□□□□ -0.02
HMGA1-201ENST00000311487 CD276Q5ZPR3 534 aa14.94□□□□□ -0.02
HMGA1-201ENST00000311487 SLC35E4Q6ICL7 350 aa14.94□□□□□ -0.02
HMGA1-201ENST00000311487 ZNF782Q6ZMW2 699 aaPredicted RBP14.94□□□□□ -0.02
HMGA1-201ENST00000311487 PCGF1Q9BSM1 259 aa14.94□□□□□ -0.02
HMGA1-201ENST00000311487 MED28Q9H204 178 aa14.94□□□□□ -0.02
HMGA1-201ENST00000311487 SIRT7Q9NRC8 400 aa14.94□□□□□ -0.02
HMGA1-201ENST00000311487 ACTBP60709 375 aa14.94□□□□□ -0.02
HMGA1-201ENST00000311487 ACTG1P63261 375 aa14.94□□□□□ -0.02
HMGA1-201ENST00000311487 NOXA1Q86UR1 476 aa14.94□□□□□ -0.02
HMGA1-201ENST00000311487 OR4D10Q8NGI6 311 aa14.94□□□□□ -0.02
HMGA1-201ENST00000311487 BEX1Q9HBH7 125 aa14.94□□□□□ -0.02
HMGA1-201ENST00000311487 IGHV3OR16-10A0A075B7F0 116 aa14.93□□□□□ -0.02
HMGA1-201ENST00000311487 IGKV1D-8A0A087WSZ0 117 aa14.93□□□□□ -0.02
HMGA1-201ENST00000311487 TRGV10A0A0A0MS01 117 aa14.93□□□□□ -0.02
HMGA1-201ENST00000311487 KIR2DS1A0A191URI9 304 aa14.93□□□□□ -0.02
HMGA1-201ENST00000311487 hADV38S2A0JD32 116 aa14.93□□□□□ -0.02
HMGA1-201ENST00000311487 ARPC1BO15143 372 aaKnown RBP14.93□□□□□ -0.02
HMGA1-201ENST00000311487 NDUFB6O95139 128 aa14.93□□□□□ -0.02
HMGA1-201ENST00000311487 AVPP01185 164 aa14.93□□□□□ -0.02
HMGA1-201ENST00000311487 AKAIN1P0CW23 69 aa14.93□□□□□ -0.02
HMGA1-201ENST00000311487 ERP29P30040 261 aaKnown RBP14.93□□□□□ -0.02
HMGA1-201ENST00000311487 ARPC4P59998 168 aa14.93□□□□□ -0.02
HMGA1-201ENST00000311487 PRAMEF5Q5TYX0 476 aa14.93□□□□□ -0.02
HMGA1-201ENST00000311487 ZNF565Q8N9K5 539 aa14.93□□□□□ -0.02
HMGA1-201ENST00000311487 LY6G5BQ8NDX9 201 aa14.93□□□□□ -0.02
HMGA1-201ENST00000311487 BEST4Q8NFU0 473 aa14.93□□□□□ -0.02
HMGA1-201ENST00000311487 DACT3Q96B18 629 aaPredicted RBP14.93□□□□□ -0.02
HMGA1-201ENST00000311487 C12orf4Q9NQ89 552 aa14.93□□□□□ -0.02
HMGA1-201ENST00000311487 IGHV3-43A0A0B4J1X8 118 aa14.92□□□□□ -0.02
HMGA1-201ENST00000311487 SERPINE3A8MV23 424 aa14.92□□□□□ -0.02
HMGA1-201ENST00000311487 ENSAO43768 121 aaKnown RBP14.92□□□□□ -0.02
HMGA1-201ENST00000311487 NAPSAO96009 420 aa14.92□□□□□ -0.02
HMGA1-201ENST00000311487 CD3DP04234 171 aa14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms