RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 IGKV1D-42A0A075B6H8 117 aa13.37□□□□□ -0.27
SHH-201ENST00000297261 C17orf51A8MQB3 221 aa13.37□□□□□ -0.27
SHH-201ENST00000297261 OR5G3P0C626 314 aa13.37□□□□□ -0.27
SHH-201ENST00000297261 FAM3BP58499 235 aaPredicted RBP13.37□□□□□ -0.27
SHH-201ENST00000297261 PNPLA5Q7Z6Z6 429 aaPredicted RBP13.37□□□□□ -0.27
SHH-201ENST00000297261 MRGPRFQ96AM1 343 aa13.37□□□□□ -0.27
SHH-201ENST00000297261 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.37□□□□□ -0.27
SHH-201ENST00000297261 B3GAT1Q9P2W7 334 aa13.37□□□□□ -0.27
SHH-201ENST00000297261 IGLV1-36A0A0B4J1U3 117 aa13.37□□□□□ -0.27
SHH-201ENST00000297261 CHEK1O14757 476 aa13.37□□□□□ -0.27
SHH-201ENST00000297261 TOX4O94842 621 aa13.37□□□□□ -0.27
SHH-201ENST00000297261 TMEM50BP56557 158 aa13.37□□□□□ -0.27
SHH-201ENST00000297261 PRDX4Q13162 271 aa13.37□□□□□ -0.27
SHH-201ENST00000297261 RNASEKQ6P5S7 137 aaKnown RBP13.37□□□□□ -0.27
SHH-201ENST00000297261 POC1AQ8NBT0 407 aa13.37□□□□□ -0.27
SHH-201ENST00000297261 OR52M1Q8NGK5 317 aa13.37□□□□□ -0.27
SHH-201ENST00000297261 OR10G8Q8NGN5 311 aa13.37□□□□□ -0.27
SHH-201ENST00000297261 OR1P1Q8NH06 330 aa13.37□□□□□ -0.27
SHH-201ENST00000297261 ADIPOR1Q96A54 375 aa13.37□□□□□ -0.27
SHH-201ENST00000297261 FAM173AQ9BQD7 235 aa13.37□□□□□ -0.27
SHH-201ENST00000297261 ZDHHC8Q9ULC8 765 aa13.37□□□□□ -0.27
SHH-201ENST00000297261 HOXB1P14653 301 aaPredicted RBP13.37□□□□□ -0.27
SHH-201ENST00000297261 FOXK1P85037 733 aa13.37□□□□□ -0.27
SHH-201ENST00000297261 OR4A4PQ8NGN8 299 aa13.37□□□□□ -0.27
SHH-201ENST00000297261 OR6X1Q8NH79 312 aa13.37□□□□□ -0.27
SHH-201ENST00000297261 TRDCB7Z8K6 153 aa13.36□□□□□ -0.27
SHH-201ENST00000297261 HSPB1P04792 205 aaKnown RBP13.36□□□□□ -0.27
SHH-201ENST00000297261 CNN1P51911 297 aaKnown RBP13.36□□□□□ -0.27
SHH-201ENST00000297261 SLC35E3Q7Z769 313 aa13.36□□□□□ -0.27
SHH-201ENST00000297261 OR10V1Q8NGI7 309 aa13.36□□□□□ -0.27
SHH-201ENST00000297261 SGMS2Q8NHU3 365 aa13.36□□□□□ -0.27
SHH-201ENST00000297261 GALMQ96C23 342 aa13.36□□□□□ -0.27
SHH-201ENST00000297261 FOXO1Q12778 655 aa13.36□□□□□ -0.27
SHH-201ENST00000297261 FZD5Q13467 585 aa13.36□□□□□ -0.27
SHH-201ENST00000297261 ZNF552Q9H707 407 aaPredicted RBP13.36□□□□□ -0.27
SHH-201ENST00000297261 PLXNB3Q9ULL4 1909 aa13.36□□□□□ -0.27
SHH-201ENST00000297261 NDUFS6O75380 124 aaKnown RBP13.36□□□□□ -0.27
SHH-201ENST00000297261 DXOO77932 396 aaKnown RBP13.36□□□□□ -0.27
SHH-201ENST00000297261 H1FOOQ8IZA3 346 aaPredicted RBP13.36□□□□□ -0.27
SHH-201ENST00000297261 KDF1Q8NAX2 398 aaPredicted RBP13.36□□□□□ -0.27
SHH-201ENST00000297261 HTTP42858 3142 aa13.36□□□□□ -0.27
SHH-201ENST00000297261 TSPAN2O60636 221 aa13.35□□□□□ -0.27
SHH-201ENST00000297261 CBR3O75828 277 aa13.35□□□□□ -0.27
SHH-201ENST00000297261 TAS2R45P59539 299 aa13.35□□□□□ -0.27
SHH-201ENST00000297261 DHRS7CA6NNS2 312 aa13.35□□□□□ -0.27
SHH-201ENST00000297261 ANAPC16Q96DE5 110 aa13.35□□□□□ -0.27
SHH-201ENST00000297261 MYOZ1Q9NP98 299 aaPredicted RBP13.35□□□□□ -0.27
SHH-201ENST00000297261 CNOT1A5YKK6 2376 aaKnown RBP13.35□□□□□ -0.27
SHH-201ENST00000297261 H0YIZ8 118 aa13.35□□□□□ -0.27
SHH-201ENST00000297261 IGKV3-11P04433 115 aa13.35□□□□□ -0.27
SHH-201ENST00000297261 CCL11P51671 97 aa13.35□□□□□ -0.27
SHH-201ENST00000297261 CFHR1Q03591 330 aa13.35□□□□□ -0.27
SHH-201ENST00000297261 SSUH2Q9Y2M2 353 aa13.35□□□□□ -0.27
SHH-201ENST00000297261 KIF26AQ9ULI4 1882 aaPredicted RBP13.35□□□□□ -0.27
SHH-201ENST00000297261 LOC102723971A0A1B0GUV8 181 aa13.35□□□□□ -0.27
SHH-201ENST00000297261 ENSAO43768 121 aaKnown RBP13.35□□□□□ -0.27
SHH-201ENST00000297261 CAMPP49913 170 aa13.35□□□□□ -0.27
SHH-201ENST00000297261 TBC1D28Q2M2D7 210 aa13.35□□□□□ -0.27
SHH-201ENST00000297261 RNF126Q9BV68 326 aa13.35□□□□□ -0.27
SHH-201ENST00000297261 CHST5Q9GZS9 411 aa13.35□□□□□ -0.27
SHH-201ENST00000297261 SPTBN1Q01082 2364 aaKnown RBP13.34□□□□□ -0.27
SHH-201ENST00000297261 DEFB108AA8MXU0 73 aa13.34□□□□□ -0.27
SHH-201ENST00000297261 PRR32B1ATL7 298 aa13.34□□□□□ -0.27
SHH-201ENST00000297261 RRP8O43159 456 aaKnown RBP13.34□□□□□ -0.27
SHH-201ENST00000297261 CELA2AP08217 269 aa13.34□□□□□ -0.27
SHH-201ENST00000297261 FCGR3AP08637 254 aa13.34□□□□□ -0.27
SHH-201ENST00000297261 C11orf42Q8N5U0 333 aa13.34□□□□□ -0.27
SHH-201ENST00000297261 DTD1Q8TEA8 209 aa13.34□□□□□ -0.27
SHH-201ENST00000297261 CT55Q8WUE5 264 aa13.34□□□□□ -0.27
SHH-201ENST00000297261 TMEM147Q9BVK8 224 aa13.34□□□□□ -0.27
SHH-201ENST00000297261 TCFL5Q9UL49 500 aa13.34□□□□□ -0.27
SHH-201ENST00000297261 PITX3O75364 302 aa13.34□□□□□ -0.27
SHH-201ENST00000297261 HRASP01112 189 aa13.34□□□□□ -0.27
SHH-201ENST00000297261 FCER1GP30273 86 aa13.34□□□□□ -0.27
SHH-201ENST00000297261 IER3P46695 156 aa13.34□□□□□ -0.27
SHH-201ENST00000297261 DSCR4P56555 118 aaPredicted RBP13.34□□□□□ -0.27
SHH-201ENST00000297261 GTF2H5Q6ZYL4 71 aa13.34□□□□□ -0.27
SHH-201ENST00000297261 SMIM15Q7Z3B0 74 aa13.34□□□□□ -0.27
SHH-201ENST00000297261 BIVMQ86UB2 503 aa13.34□□□□□ -0.27
SHH-201ENST00000297261 SMIM8Q96KF7 97 aa13.34□□□□□ -0.27
SHH-201ENST00000297261 GFI1Q99684 422 aa13.34□□□□□ -0.27
SHH-201ENST00000297261 A0A1B0GTI1 187 aa13.34□□□□□ -0.27
SHH-201ENST00000297261 SIAH2O43255 324 aa13.34□□□□□ -0.27
SHH-201ENST00000297261 HOXA5P20719 270 aa13.34□□□□□ -0.27
SHH-201ENST00000297261 UNC119Q13432 240 aa13.34□□□□□ -0.27
SHH-201ENST00000297261 LBHQ53QV2 105 aaPredicted RBP13.34□□□□□ -0.27
SHH-201ENST00000297261 CXorf67Q86X51 503 aaPredicted RBP13.34□□□□□ -0.27
SHH-201ENST00000297261 OR10AD1Q8NGE0 317 aa13.34□□□□□ -0.27
SHH-201ENST00000297261 HSPB9Q9BQS6 159 aa13.34□□□□□ -0.27
SHH-201ENST00000297261 SPTBN2O15020 2390 aa13.34□□□□□ -0.27
SHH-201ENST00000297261 J3QRE1 110 aa13.33□□□□□ -0.27
SHH-201ENST00000297261 RAMP1O60894 148 aa13.33□□□□□ -0.27
SHH-201ENST00000297261 PI4KAP42356 2102 aa13.33□□□□□ -0.27
SHH-201ENST00000297261 GNG3P63215 75 aa13.33□□□□□ -0.27
SHH-201ENST00000297261 HES3Q5TGS1 186 aa13.33□□□□□ -0.27
SHH-201ENST00000297261 DEFB108BQ8NET1 73 aa13.33□□□□□ -0.27
SHH-201ENST00000297261 RNF24Q9Y225 148 aa13.33□□□□□ -0.27
SHH-201ENST00000297261 IL2RAP01589 272 aa13.33□□□□□ -0.28
SHH-201ENST00000297261 RPS23P62266 143 aaKnown RBP13.33□□□□□ -0.28
SHH-201ENST00000297261 WIPI1Q5MNZ9 446 aaPredicted RBP13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms