RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 FBXL17Q9UF56 701 aa9.7□□□□□ -0.86
CUX1-202ENST00000292538 PCDHB10Q9UN67 800 aa9.7□□□□□ -0.86
CUX1-202ENST00000292538 RCL1Q9Y2P8 373 aaKnown RBP9.7□□□□□ -0.86
CUX1-202ENST00000292538 SLC25A15Q9Y619 301 aa9.7□□□□□ -0.86
CUX1-202ENST00000292538 H3BP45 60 aa9.69□□□□□ -0.86
CUX1-202ENST00000292538 ATXN7O15265 892 aaPredicted RBP9.69□□□□□ -0.86
CUX1-202ENST00000292538 PSG2P11465 335 aa9.69□□□□□ -0.86
CUX1-202ENST00000292538 IL2RGP31785 369 aa9.69□□□□□ -0.86
CUX1-202ENST00000292538 IL13RA2Q14627 380 aa9.69□□□□□ -0.86
CUX1-202ENST00000292538 TUSC1Q2TAM9 212 aa9.69□□□□□ -0.86
CUX1-202ENST00000292538 OR2W1Q9Y3N9 320 aa9.69□□□□□ -0.86
CUX1-202ENST00000292538 MFSD2BA6NFX1 497 aa9.69□□□□□ -0.86
CUX1-202ENST00000292538 PRRG2O14669 202 aa9.69□□□□□ -0.86
CUX1-202ENST00000292538 PGLYRP1O75594 196 aaPredicted RBP9.69□□□□□ -0.86
CUX1-202ENST00000292538 GLIPR1P48060 266 aa9.69□□□□□ -0.86
CUX1-202ENST00000292538 DEFA5Q01523 94 aa9.69□□□□□ -0.86
CUX1-202ENST00000292538 COL10A1Q03692 680 aa9.69□□□□□ -0.86
CUX1-202ENST00000292538 GNMTQ14749 295 aa9.69□□□□□ -0.86
CUX1-202ENST00000292538 FAM76BQ5HYJ3 339 aa9.69□□□□□ -0.86
CUX1-202ENST00000292538 WDR82Q6UXN9 313 aa9.69□□□□□ -0.86
CUX1-202ENST00000292538 ZCCHC24Q8N2G6 241 aaKnown RBP9.69□□□□□ -0.86
CUX1-202ENST00000292538 OR52L2PQ8NGH6 319 aa9.69□□□□□ -0.86
CUX1-202ENST00000292538 GALNT14Q96FL9 552 aa9.69□□□□□ -0.86
CUX1-202ENST00000292538 TMEM222Q9H0R3 208 aa9.69□□□□□ -0.86
CUX1-202ENST00000292538 SLC25A32Q9H2D1 315 aa9.69□□□□□ -0.86
CUX1-202ENST00000292538 CYTL1Q9NRR1 136 aa9.69□□□□□ -0.86
CUX1-202ENST00000292538 KCNIP1Q9NZI2 227 aa9.69□□□□□ -0.86
CUX1-202ENST00000292538 ST8SIA3O43173 380 aa9.69□□□□□ -0.86
CUX1-202ENST00000292538 CRYZL1O95825 349 aa9.69□□□□□ -0.86
CUX1-202ENST00000292538 S100GP29377 79 aa9.69□□□□□ -0.86
CUX1-202ENST00000292538 ID4P47928 161 aa9.69□□□□□ -0.86
CUX1-202ENST00000292538 MOGAT3Q86VF5 341 aa9.69□□□□□ -0.86
CUX1-202ENST00000292538 Q8IYB0 196 aa9.69□□□□□ -0.86
CUX1-202ENST00000292538 HSD17B11Q8NBQ5 300 aa9.69□□□□□ -0.86
CUX1-202ENST00000292538 C18orf12Q96KH6 178 aa9.69□□□□□ -0.86
CUX1-202ENST00000292538 USB1Q9BQ65 265 aaKnown RBP9.69□□□□□ -0.86
CUX1-202ENST00000292538 REG4Q9BYZ8 158 aa9.69□□□□□ -0.86
CUX1-202ENST00000292538 RIMS4Q9H426 269 aaPredicted RBP9.69□□□□□ -0.86
CUX1-202ENST00000292538 GLS2Q9UI32 602 aa9.69□□□□□ -0.86
CUX1-202ENST00000292538 FAM24AA6NFZ4 105 aa9.68□□□□□ -0.86
CUX1-202ENST00000292538 WRBO00258 174 aa9.68□□□□□ -0.86
CUX1-202ENST00000292538 GLAP06280 429 aa9.68□□□□□ -0.86
CUX1-202ENST00000292538 CTXN2P0C2S0 81 aa9.68□□□□□ -0.86
CUX1-202ENST00000292538 SSTR5P35346 364 aa9.68□□□□□ -0.86
CUX1-202ENST00000292538 EDDM3BP56851 147 aa9.68□□□□□ -0.86
CUX1-202ENST00000292538 LINC00205P59089 165 aa9.68□□□□□ -0.86
CUX1-202ENST00000292538 BTNL3Q6UXE8 466 aa9.68□□□□□ -0.86
CUX1-202ENST00000292538 C11orf53Q8IXP5 236 aa9.68□□□□□ -0.86
CUX1-202ENST00000292538 OR2V2Q96R30 315 aa9.68□□□□□ -0.86
CUX1-202ENST00000292538 DHRS9Q9BPW9 319 aa9.68□□□□□ -0.86
CUX1-202ENST00000292538 CST7O76096 145 aa9.68□□□□□ -0.86
CUX1-202ENST00000292538 NKX2-1P43699 371 aaPredicted RBP9.68□□□□□ -0.86
CUX1-202ENST00000292538 UCP3P55916 312 aa9.68□□□□□ -0.86
CUX1-202ENST00000292538 ERVK11-1P61568 191 aa9.68□□□□□ -0.86
CUX1-202ENST00000292538 IL15RAQ13261 267 aa9.68□□□□□ -0.86
CUX1-202ENST00000292538 HNF4GQ14541 408 aa9.68□□□□□ -0.86
CUX1-202ENST00000292538 KRBOX4Q5JUW0 171 aa9.68□□□□□ -0.86
CUX1-202ENST00000292538 ZNF497Q6ZNH5 498 aa9.68□□□□□ -0.86
CUX1-202ENST00000292538 DOLPP1Q86YN1 238 aa9.68□□□□□ -0.86
CUX1-202ENST00000292538 SELENOHQ8IZQ5 122 aaKnown RBP9.68□□□□□ -0.86
CUX1-202ENST00000292538 C1orf162Q8NEQ5 155 aaPredicted RBP9.68□□□□□ -0.86
CUX1-202ENST00000292538 OR4A4PQ8NGN8 299 aa9.68□□□□□ -0.86
CUX1-202ENST00000292538 AQP10Q96PS8 301 aa9.68□□□□□ -0.86
CUX1-202ENST00000292538 SHARPINQ9H0F6 387 aa9.68□□□□□ -0.86
CUX1-202ENST00000292538 FAM234AQ9H0X4 552 aa9.68□□□□□ -0.86
CUX1-202ENST00000292538 TRBV6-7A0A0A0MS04 114 aa9.67□□□□□ -0.86
CUX1-202ENST00000292538 MED6O75586 246 aa9.67□□□□□ -0.86
CUX1-202ENST00000292538 PPP1CCP36873 323 aaKnown RBP9.67□□□□□ -0.86
CUX1-202ENST00000292538 ZNF324BQ6AW86 544 aaPredicted RBP9.67□□□□□ -0.86
CUX1-202ENST00000292538 LINC00596Q86U02 117 aa9.67□□□□□ -0.86
CUX1-202ENST00000292538 ZNRF1Q8ND25 227 aa9.67□□□□□ -0.86
CUX1-202ENST00000292538 SVIPQ8NHG7 77 aa9.67□□□□□ -0.86
CUX1-202ENST00000292538 NINJ1Q92982 152 aa9.67□□□□□ -0.86
CUX1-202ENST00000292538 RBMXL1Q96E39 390 aaKnown RBP9.67□□□□□ -0.86
CUX1-202ENST00000292538 WASF3Q9UPY6 502 aa9.67□□□□□ -0.86
CUX1-202ENST00000292538 RFNGQ9Y644 331 aa9.67□□□□□ -0.86
CUX1-202ENST00000292538 A0A1B0GW55 424 aa9.67□□□□□ -0.86
CUX1-202ENST00000292538 DUX4L2P0CJ85 424 aa9.67□□□□□ -0.86
CUX1-202ENST00000292538 DUX4L3P0CJ86 424 aa9.67□□□□□ -0.86
CUX1-202ENST00000292538 DUX4L4P0CJ87 422 aa9.67□□□□□ -0.86
CUX1-202ENST00000292538 DUX4L5P0CJ88 424 aa9.67□□□□□ -0.86
CUX1-202ENST00000292538 DUX4L6P0CJ89 424 aa9.67□□□□□ -0.86
CUX1-202ENST00000292538 DUX4L7P0CJ90 424 aa9.67□□□□□ -0.86
CUX1-202ENST00000292538 HOXB1P14653 301 aaPredicted RBP9.67□□□□□ -0.86
CUX1-202ENST00000292538 VAMP2P63027 116 aa9.67□□□□□ -0.86
CUX1-202ENST00000292538 BTN1A1Q13410 526 aa9.67□□□□□ -0.86
CUX1-202ENST00000292538 ACP7Q6ZNF0 438 aa9.67□□□□□ -0.86
CUX1-202ENST00000292538 BVESQ8NE79 360 aa9.67□□□□□ -0.86
CUX1-202ENST00000292538 FAM57AQ8TBR7 257 aa9.67□□□□□ -0.86
CUX1-202ENST00000292538 SNRNP40Q96DI7 357 aaKnown RBP9.67□□□□□ -0.86
CUX1-202ENST00000292538 DUX4Q9UBX2 424 aa9.67□□□□□ -0.86
CUX1-202ENST00000292538 TMED3Q9Y3Q3 217 aa9.67□□□□□ -0.86
CUX1-202ENST00000292538 AUP1Q9Y679 476 aa9.67□□□□□ -0.86
CUX1-202ENST00000292538 ABCA4P78363 2273 aa9.67□□□□□ -0.86
CUX1-202ENST00000292538 E5RGE8 158 aa9.66□□□□□ -0.86
CUX1-202ENST00000292538 PRSS44E7EML9 344 aa9.66□□□□□ -0.86
CUX1-202ENST00000292538 H7C1Q1 480 aa9.66□□□□□ -0.86
CUX1-202ENST00000292538 J3QW42 95 aa9.66□□□□□ -0.86
CUX1-202ENST00000292538 IGLV1-44P01699 117 aa9.66□□□□□ -0.86
CUX1-202ENST00000292538 EGR1P18146 543 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 85.8 ms