RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 TCF21O43680 179 aa12.33□□□□□ -0.44
SDC1-201ENST00000254351 PSG2P11465 335 aa12.33□□□□□ -0.44
SDC1-201ENST00000254351 CCL2P13500 99 aa12.33□□□□□ -0.44
SDC1-201ENST00000254351 OR3A1P47881 315 aa12.33□□□□□ -0.44
SDC1-201ENST00000254351 ENDOGQ14249 297 aaKnown RBP12.33□□□□□ -0.44
SDC1-201ENST00000254351 PLPPR5Q32ZL2 321 aa12.33□□□□□ -0.44
SDC1-201ENST00000254351 OR51G1Q8NGK1 321 aa12.33□□□□□ -0.44
SDC1-201ENST00000254351 ZNF845Q96IR2 970 aaPredicted RBP12.33□□□□□ -0.44
SDC1-201ENST00000254351 ADGRG7Q96K78 797 aa12.33□□□□□ -0.44
SDC1-201ENST00000254351 ALKBH3Q96Q83 286 aaPredicted RBP12.33□□□□□ -0.44
SDC1-201ENST00000254351 SPIN2AQ99865 258 aa12.33□□□□□ -0.44
SDC1-201ENST00000254351 SPIN2BQ9BPZ2 258 aa12.33□□□□□ -0.44
SDC1-201ENST00000254351 KNTC1P50748 2209 aa12.33□□□□□ -0.44
SDC1-201ENST00000254351 HS3ST1O14792 307 aa12.33□□□□□ -0.44
SDC1-201ENST00000254351 SERPINE2P07093 398 aa12.33□□□□□ -0.44
SDC1-201ENST00000254351 RPL23P62829 140 aaKnown RBP12.33□□□□□ -0.44
SDC1-201ENST00000254351 ZNF92Q03936 586 aa12.33□□□□□ -0.44
SDC1-201ENST00000254351 SPINK9Q5DT21 86 aa12.33□□□□□ -0.44
SDC1-201ENST00000254351 ARSJQ5FYB0 599 aaPredicted RBP12.33□□□□□ -0.44
SDC1-201ENST00000254351 OPN3Q9H1Y3 402 aaPredicted RBP12.33□□□□□ -0.44
SDC1-201ENST00000254351 CACNG5Q9UF02 275 aa12.33□□□□□ -0.44
SDC1-201ENST00000254351 TLX3O43711 291 aaPredicted RBP12.32□□□□□ -0.44
SDC1-201ENST00000254351 PFN1P07737 140 aaKnown RBP12.32□□□□□ -0.44
SDC1-201ENST00000254351 GCH1P30793 250 aa12.32□□□□□ -0.44
SDC1-201ENST00000254351 CD81P60033 236 aa12.32□□□□□ -0.44
SDC1-201ENST00000254351 ERVFC1-1P60608 527 aa12.32□□□□□ -0.44
SDC1-201ENST00000254351 RAB4BP61018 213 aa12.32□□□□□ -0.44
SDC1-201ENST00000254351 PNRC1Q12796 327 aaPredicted RBP12.32□□□□□ -0.44
SDC1-201ENST00000254351 OR10V1Q8NGI7 309 aa12.32□□□□□ -0.44
SDC1-201ENST00000254351 EXTL1Q92935 676 aa12.32□□□□□ -0.44
SDC1-201ENST00000254351 HLA-CQ95604 372 aa12.32□□□□□ -0.44
SDC1-201ENST00000254351 ANGPTL4Q9BY76 406 aa12.32□□□□□ -0.44
SDC1-201ENST00000254351 PARD6AQ9NPB6 346 aa12.32□□□□□ -0.44
SDC1-201ENST00000254351 CISD1Q9NZ45 108 aaKnown RBP12.32□□□□□ -0.44
SDC1-201ENST00000254351 PPP1R3CQ9UQK1 317 aa12.32□□□□□ -0.44
SDC1-201ENST00000254351 FER1L5A0AVI2 2057 aa12.32□□□□□ -0.44
SDC1-201ENST00000254351 NPIPA2E9PIF3 369 aa12.32□□□□□ -0.44
SDC1-201ENST00000254351 NPIPA3F8WFD2 350 aa12.32□□□□□ -0.44
SDC1-201ENST00000254351 GCGP01275 180 aa12.32□□□□□ -0.44
SDC1-201ENST00000254351 RAET1LQ5VY80 246 aa12.32□□□□□ -0.44
SDC1-201ENST00000254351 H1FOOQ8IZA3 346 aaPredicted RBP12.32□□□□□ -0.44
SDC1-201ENST00000254351 OR10J5Q8NHC4 309 aa12.32□□□□□ -0.44
SDC1-201ENST00000254351 GPR146Q96CH1 333 aa12.32□□□□□ -0.44
SDC1-201ENST00000254351 IMMP2LQ96T52 175 aa12.32□□□□□ -0.44
SDC1-201ENST00000254351 FAM103A1Q9BTL3 118 aaKnown RBP12.32□□□□□ -0.44
SDC1-201ENST00000254351 ULBP2Q9BZM5 246 aa12.32□□□□□ -0.44
SDC1-201ENST00000254351 PARLQ9H300 379 aa12.32□□□□□ -0.44
SDC1-201ENST00000254351 OR51I2Q9H344 312 aa12.32□□□□□ -0.44
SDC1-201ENST00000254351 VAX2Q9UIW0 290 aa12.32□□□□□ -0.44
SDC1-201ENST00000254351 V9GYS6 101 aa12.32□□□□□ -0.44
SDC1-201ENST00000254351 CA11O75493 328 aa12.31□□□□□ -0.44
SDC1-201ENST00000254351 SHBQ15464 509 aa12.31□□□□□ -0.44
SDC1-201ENST00000254351 ZNF611Q8N823 705 aa12.31□□□□□ -0.44
SDC1-201ENST00000254351 MRPL30Q8TCC3 161 aaKnown RBP12.31□□□□□ -0.44
SDC1-201ENST00000254351 OXGR1Q96P68 337 aa12.31□□□□□ -0.44
SDC1-201ENST00000254351 OR51B6Q9H340 312 aa12.31□□□□□ -0.44
SDC1-201ENST00000254351 HPRT1P00492 218 aa12.31□□□□□ -0.44
SDC1-201ENST00000254351 IGKV1D-33P01593 117 aa12.31□□□□□ -0.44
SDC1-201ENST00000254351 IGKV1-33P01594 117 aa12.31□□□□□ -0.44
SDC1-201ENST00000254351 VDAC1P21796 283 aa12.31□□□□□ -0.44
SDC1-201ENST00000254351 MDH2P40926 338 aaKnown RBP12.31□□□□□ -0.44
SDC1-201ENST00000254351 Q6ZVH6 145 aa12.31□□□□□ -0.44
SDC1-201ENST00000254351 BEND2Q8NDZ0 799 aa12.31□□□□□ -0.44
SDC1-201ENST00000254351 OR2T10Q8NGZ9 312 aa12.31□□□□□ -0.44
SDC1-201ENST00000254351 RDH5Q92781 318 aa12.31□□□□□ -0.44
SDC1-201ENST00000254351 SPTSSAQ969W0 71 aa12.31□□□□□ -0.44
SDC1-201ENST00000254351 ZNF488Q96MN9 340 aa12.31□□□□□ -0.44
SDC1-201ENST00000254351 C11orf1Q9H5F2 150 aa12.31□□□□□ -0.44
SDC1-201ENST00000254351 PSENENQ9NZ42 101 aa12.31□□□□□ -0.44
SDC1-201ENST00000254351 NAGKQ9UJ70 344 aa12.31□□□□□ -0.44
SDC1-201ENST00000254351 TRAV34A0A0B4J273 112 aa12.31□□□□□ -0.44
SDC1-201ENST00000254351 SLC22A20A6NK97 555 aa12.31□□□□□ -0.44
SDC1-201ENST00000254351 DLEU1O43261 78 aa12.31□□□□□ -0.44
SDC1-201ENST00000254351 PDCD6O75340 191 aa12.31□□□□□ -0.44
SDC1-201ENST00000254351 PDGFBP01127 241 aaPredicted RBP12.31□□□□□ -0.44
SDC1-201ENST00000254351 DTYMKP23919 212 aa12.31□□□□□ -0.44
SDC1-201ENST00000254351 COL8A2P25067 703 aa12.31□□□□□ -0.44
SDC1-201ENST00000254351 ID3Q02535 119 aa12.31□□□□□ -0.44
SDC1-201ENST00000254351 EIF3IQ13347 325 aaKnown RBP12.31□□□□□ -0.44
SDC1-201ENST00000254351 OR2V1Q8NHB1 315 aa12.31□□□□□ -0.44
SDC1-201ENST00000254351 VN1R17PQ8TDU5 208 aa12.31□□□□□ -0.44
SDC1-201ENST00000254351 FGF21Q9NSA1 209 aa12.31□□□□□ -0.44
SDC1-201ENST00000254351 NAT8Q9UHE5 227 aa12.31□□□□□ -0.44
SDC1-201ENST00000254351 ERRFI1Q9UJM3 462 aaPredicted RBP12.31□□□□□ -0.44
SDC1-201ENST00000254351 PAX1P15863 534 aa12.3□□□□□ -0.44
SDC1-201ENST00000254351 GNG10P50151 68 aa12.3□□□□□ -0.44
SDC1-201ENST00000254351 TGFBR3Q03167 851 aa12.3□□□□□ -0.44
SDC1-201ENST00000254351 TMEM41BQ5BJD5 291 aa12.3□□□□□ -0.44
SDC1-201ENST00000254351 ZNF441Q8N8Z8 693 aa12.3□□□□□ -0.44
SDC1-201ENST00000254351 TRAPPC1Q9Y5R8 145 aa12.3□□□□□ -0.44
SDC1-201ENST00000254351 B4E171 279 aa12.3□□□□□ -0.44
SDC1-201ENST00000254351 RPLP1P05386 114 aaKnown RBP12.3□□□□□ -0.44
SDC1-201ENST00000254351 CELA2AP08217 269 aa12.3□□□□□ -0.44
SDC1-201ENST00000254351 TSPAN7P41732 249 aa12.3□□□□□ -0.44
SDC1-201ENST00000254351 TNFSF10P50591 281 aa12.3□□□□□ -0.44
SDC1-201ENST00000254351 CNN1P51911 297 aaKnown RBP12.3□□□□□ -0.44
SDC1-201ENST00000254351 MEF2BQ02080 365 aaPredicted RBP12.3□□□□□ -0.44
SDC1-201ENST00000254351 RPP25LQ8N5L8 163 aaKnown RBP12.3□□□□□ -0.44
SDC1-201ENST00000254351 RNASEH2CQ8TDP1 164 aaKnown RBP12.3□□□□□ -0.44
SDC1-201ENST00000254351 OR4C12Q96R67 309 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 97.9 ms