RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 RBFOX3A6NFN3 312 aa11.18□□□□□ -0.62
USP40-201ENST00000251722 PPIAL4DF5H284 164 aa11.18□□□□□ -0.62
USP40-201ENST00000251722 FCGR3BO75015 233 aa11.18□□□□□ -0.62
USP40-201ENST00000251722 PPIAL4FP0DN26 164 aa11.18□□□□□ -0.62
USP40-201ENST00000251722 MESTQ5EB52 335 aa11.18□□□□□ -0.62
USP40-201ENST00000251722 HSD17B10Q99714 261 aaKnown RBP11.18□□□□□ -0.62
USP40-201ENST00000251722 PPIAL4AQ9Y536 164 aa11.18□□□□□ -0.62
USP40-201ENST00000251722 C3orf85A0A1B0GTC6 90 aa11.18□□□□□ -0.62
USP40-201ENST00000251722 OR3A4PP47883 348 aa11.18□□□□□ -0.62
USP40-201ENST00000251722 OR52B4Q8NGK2 314 aa11.18□□□□□ -0.62
USP40-201ENST00000251722 PTX4Q96A99 478 aa11.18□□□□□ -0.62
USP40-201ENST00000251722 COL25A1Q9BXS0 654 aaPredicted RBP11.18□□□□□ -0.62
USP40-201ENST00000251722 WNT5BQ9H1J7 359 aa11.18□□□□□ -0.62
USP40-201ENST00000251722 ZNF835Q9Y2P0 537 aa11.18□□□□□ -0.62
USP40-201ENST00000251722 CARHSP1Q9Y2V2 147 aaKnown RBP11.18□□□□□ -0.62
USP40-201ENST00000251722 FER1L6Q2WGJ9 1857 aa11.18□□□□□ -0.62
USP40-201ENST00000251722 LOC102723971A0A1B0GUV8 181 aa11.18□□□□□ -0.62
USP40-201ENST00000251722 NXPH3O95157 252 aa11.18□□□□□ -0.62
USP40-201ENST00000251722 ZFPL1O95159 310 aa11.18□□□□□ -0.62
USP40-201ENST00000251722 C1QAP02745 245 aa11.18□□□□□ -0.62
USP40-201ENST00000251722 ARHGAP5-AS1Q96IT6 56 aa11.18□□□□□ -0.62
USP40-201ENST00000251722 WIPI2Q9Y4P8 454 aa11.18□□□□□ -0.62
USP40-201ENST00000251722 LIPGQ9Y5X9 500 aa11.18□□□□□ -0.62
USP40-201ENST00000251722 SLC25A17O43808 307 aa11.18□□□□□ -0.62
USP40-201ENST00000251722 CXCL3P19876 107 aa11.18□□□□□ -0.62
USP40-201ENST00000251722 FAM219AQ8IW50 185 aa11.18□□□□□ -0.62
USP40-201ENST00000251722 GCSAMQ8N6F7 178 aa11.18□□□□□ -0.62
USP40-201ENST00000251722 MARS2Q96GW9 593 aaKnown RBP11.18□□□□□ -0.62
USP40-201ENST00000251722 SLC6A13Q9NSD5 602 aa11.18□□□□□ -0.62
USP40-201ENST00000251722 A0A1W2PR77 199 aa11.17□□□□□ -0.62
USP40-201ENST00000251722 RBP4P02753 201 aa11.17□□□□□ -0.62
USP40-201ENST00000251722 OPRK1P41145 380 aa11.17□□□□□ -0.62
USP40-201ENST00000251722 MMP16P51512 607 aa11.17□□□□□ -0.62
USP40-201ENST00000251722 ARF6P62330 175 aa11.17□□□□□ -0.62
USP40-201ENST00000251722 RHNO1Q9BSD3 238 aa11.17□□□□□ -0.62
USP40-201ENST00000251722 PIMREGQ9BSJ6 248 aa11.17□□□□□ -0.62
USP40-201ENST00000251722 OR2J1Q9GZK6 312 aa11.17□□□□□ -0.62
USP40-201ENST00000251722 FLRT3Q9NZU0 649 aa11.17□□□□□ -0.62
USP40-201ENST00000251722 EMP1P54849 157 aa11.17□□□□□ -0.62
USP40-201ENST00000251722 DMKNQ6E0U4 476 aaPredicted RBP11.17□□□□□ -0.62
USP40-201ENST00000251722 CXorf67Q86X51 503 aaPredicted RBP11.17□□□□□ -0.62
USP40-201ENST00000251722 A0A0U1RQV5 110 aa11.17□□□□□ -0.62
USP40-201ENST00000251722 PLA2G10O15496 165 aa11.17□□□□□ -0.62
USP40-201ENST00000251722 GREM1O60565 184 aa11.17□□□□□ -0.62
USP40-201ENST00000251722 TSPAN2O60636 221 aa11.17□□□□□ -0.62
USP40-201ENST00000251722 EML2O95834 649 aa11.17□□□□□ -0.62
USP40-201ENST00000251722 SLC52A3Q9NQ40 469 aa11.17□□□□□ -0.62
USP40-201ENST00000251722 TTC3P53804 2025 aa11.17□□□□□ -0.62
USP40-201ENST00000251722 FAM90A10PA6NDY2 464 aa11.17□□□□□ -0.62
USP40-201ENST00000251722 FAM90A18PA6NE21 464 aa11.17□□□□□ -0.62
USP40-201ENST00000251722 FAM90A16PA6NEW6 464 aa11.17□□□□□ -0.62
USP40-201ENST00000251722 FAM90A20PA6NIJ5 464 aa11.17□□□□□ -0.62
USP40-201ENST00000251722 FAM90A8PA6NJQ4 464 aa11.17□□□□□ -0.62
USP40-201ENST00000251722 FAM90A7PA6NKC0 464 aa11.17□□□□□ -0.62
USP40-201ENST00000251722 FAM90A22PA8MWA6 464 aa11.17□□□□□ -0.62
USP40-201ENST00000251722 FAM90A12PA8MX19 464 aa11.17□□□□□ -0.62
USP40-201ENST00000251722 FAM90A5PA8MXJ8 464 aa11.17□□□□□ -0.62
USP40-201ENST00000251722 FAM90A23PA8MXZ1 464 aa11.17□□□□□ -0.62
USP40-201ENST00000251722 ISLRO14498 428 aa11.17□□□□□ -0.62
USP40-201ENST00000251722 GPANK1O95872 356 aa11.17□□□□□ -0.62
USP40-201ENST00000251722 IGHA1P01876 353 aa11.17□□□□□ -0.62
USP40-201ENST00000251722 FAM90A15PP0C7V4 464 aa11.17□□□□□ -0.62
USP40-201ENST00000251722 FAM90A13PP0C7W8 464 aa11.17□□□□□ -0.62
USP40-201ENST00000251722 FAM90A14PP0C7W9 464 aa11.17□□□□□ -0.62
USP40-201ENST00000251722 FAM90A24PP0C7X0 464 aa11.17□□□□□ -0.62
USP40-201ENST00000251722 COX7A1P24310 79 aa11.17□□□□□ -0.62
USP40-201ENST00000251722 RHOBP62745 196 aa11.17□□□□□ -0.62
USP40-201ENST00000251722 GGTLC2Q14390 218 aa11.17□□□□□ -0.62
USP40-201ENST00000251722 FAM169BQ8N8A8 192 aa11.17□□□□□ -0.62
USP40-201ENST00000251722 OR2D2Q9H210 308 aa11.17□□□□□ -0.62
USP40-201ENST00000251722 VAX2Q9UIW0 290 aa11.17□□□□□ -0.62
USP40-201ENST00000251722 HSPB8Q9UJY1 196 aa11.17□□□□□ -0.62
USP40-201ENST00000251722 CDC42EP3Q9UKI2 254 aa11.17□□□□□ -0.62
USP40-201ENST00000251722 IGHV3-64DA0A0J9YX35 117 aa11.16□□□□□ -0.62
USP40-201ENST00000251722 CTAG2O75638 210 aa11.16□□□□□ -0.62
USP40-201ENST00000251722 CD1BP29016 333 aa11.16□□□□□ -0.62
USP40-201ENST00000251722 RTP5Q14D33 572 aa11.16□□□□□ -0.62
USP40-201ENST00000251722 CLEC18BQ6UXF7 455 aa11.16□□□□□ -0.62
USP40-201ENST00000251722 MOGAT3Q86VF5 341 aa11.16□□□□□ -0.62
USP40-201ENST00000251722 SLC25A45Q8N413 288 aa11.16□□□□□ -0.62
USP40-201ENST00000251722 DMRTA2Q96SC8 542 aa11.16□□□□□ -0.62
USP40-201ENST00000251722 CCL27Q9Y4X3 112 aa11.16□□□□□ -0.62
USP40-201ENST00000251722 SHROOM3Q8TF72 1996 aa11.16□□□□□ -0.62
USP40-201ENST00000251722 MPC2O95563 127 aa11.16□□□□□ -0.62
USP40-201ENST00000251722 PRSS54Q6PEW0 395 aa11.16□□□□□ -0.62
USP40-201ENST00000251722 TGIF2LYQ8IUE0 185 aa11.16□□□□□ -0.62
USP40-201ENST00000251722 TMEM183AQ8IXX5 376 aa11.16□□□□□ -0.62
USP40-201ENST00000251722 CHST5Q9GZS9 411 aa11.16□□□□□ -0.62
USP40-201ENST00000251722 PRSS23O95084 383 aa11.16□□□□□ -0.62
USP40-201ENST00000251722 S100A4P26447 101 aaKnown RBP11.16□□□□□ -0.62
USP40-201ENST00000251722 NPBWR2P48146 333 aa11.16□□□□□ -0.62
USP40-201ENST00000251722 HLA-DRB5Q30154 266 aa11.16□□□□□ -0.62
USP40-201ENST00000251722 LCN15Q6UWW0 184 aa11.16□□□□□ -0.62
USP40-201ENST00000251722 TRBV5-3A0A0A0MS03 114 aa11.16□□□□□ -0.62
USP40-201ENST00000251722 A0A1W2PR80 420 aa11.16□□□□□ -0.62
USP40-201ENST00000251722 FCN1O00602 326 aa11.16□□□□□ -0.62
USP40-201ENST00000251722 SLC35B1P78383 322 aa11.16□□□□□ -0.62
USP40-201ENST00000251722 MRGPRDQ8TDS7 321 aa11.16□□□□□ -0.62
USP40-201ENST00000251722 KIAA1217Q5T5P2 1943 aa11.16□□□□□ -0.62
USP40-201ENST00000251722 MEX3AA1L020 520 aaKnown RBP11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms