RNA–Protein interactions for RNA: ENST00000627000.1

CHRNA4-209, Transcript of cholinergic receptor nicotinic alpha 4 subunit, humanhuman

TSL 1 (best)

Gene CHRNA4, Length 2,192 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4-209ENST00000627000 ZNF565Q8N9K5 539 aa16.58■□□□□ 0.24
CHRNA4-209ENST00000627000 RELL2Q8NC24 303 aaPredicted RBP16.58■□□□□ 0.24
CHRNA4-209ENST00000627000 C18orf12Q96KH6 178 aa16.58■□□□□ 0.24
CHRNA4-209ENST00000627000 CXorf58Q96LI9 332 aa16.58■□□□□ 0.24
CHRNA4-209ENST00000627000 TLNRD1Q9H1K6 362 aa16.58■□□□□ 0.24
CHRNA4-209ENST00000627000 OR1A1Q9P1Q5 309 aa16.58■□□□□ 0.24
CHRNA4-209ENST00000627000 C3orf85A0A1B0GTC6 90 aa16.57■□□□□ 0.24
CHRNA4-209ENST00000627000 FAM87AP0C7U9 286 aa16.57■□□□□ 0.24
CHRNA4-209ENST00000627000 VHLLQ6RSH7 139 aa16.57■□□□□ 0.24
CHRNA4-209ENST00000627000 MEX3BQ6ZN04 569 aaKnown RBP16.57■□□□□ 0.24
CHRNA4-209ENST00000627000 LRTM2Q8N967 370 aa16.57■□□□□ 0.24
CHRNA4-209ENST00000627000 GALNT11Q8NCW6 608 aa16.57■□□□□ 0.24
CHRNA4-209ENST00000627000 SNRNP40Q96DI7 357 aaKnown RBP16.57■□□□□ 0.24
CHRNA4-209ENST00000627000 MEMO1Q9Y316 297 aa16.57■□□□□ 0.24
CHRNA4-209ENST00000627000 PTPRQQ9UMZ3 2332 aa16.57■□□□□ 0.24
CHRNA4-209ENST00000627000 F5H0A9 414 aaPredicted RBP16.57■□□□□ 0.24
CHRNA4-209ENST00000627000 CRYAAP02489 173 aa16.57■□□□□ 0.24
CHRNA4-209ENST00000627000 FAM74A1Q5RGS3 127 aa16.57■□□□□ 0.24
CHRNA4-209ENST00000627000 ACP7Q6ZNF0 438 aa16.57■□□□□ 0.24
CHRNA4-209ENST00000627000 IQCF2Q8IXL9 164 aa16.57■□□□□ 0.24
CHRNA4-209ENST00000627000 OR2Z1Q8NG97 314 aa16.57■□□□□ 0.24
CHRNA4-209ENST00000627000 RBPMSQ93062 196 aaKnown RBP16.57■□□□□ 0.24
CHRNA4-209ENST00000627000 ARPC5LQ9BPX5 153 aa16.57■□□□□ 0.24
CHRNA4-209ENST00000627000 CABLES2Q9BTV7 478 aa16.57■□□□□ 0.24
CHRNA4-209ENST00000627000 TREM2Q9NZC2 230 aa16.57■□□□□ 0.24
CHRNA4-209ENST00000627000 TUBD1Q9UJT1 453 aa16.57■□□□□ 0.24
CHRNA4-209ENST00000627000 TRAPPC2LQ9UL33 140 aa16.57■□□□□ 0.24
CHRNA4-209ENST00000627000 PCDHB10Q9UN67 800 aa16.57■□□□□ 0.24
CHRNA4-209ENST00000627000 hCG_1807616A0A1W2PRN6 198 aa16.56■□□□□ 0.24
CHRNA4-209ENST00000627000 C1QTNF9BB2RNN3 333 aa16.56■□□□□ 0.24
CHRNA4-209ENST00000627000 GPR31O00270 319 aa16.56■□□□□ 0.24
CHRNA4-209ENST00000627000 SHEQ5VZ18 495 aa16.56■□□□□ 0.24
CHRNA4-209ENST00000627000 C1orf174Q8IYL3 243 aa16.56■□□□□ 0.24
CHRNA4-209ENST00000627000 LGI3Q8N145 548 aa16.56■□□□□ 0.24
CHRNA4-209ENST00000627000 OR10J5Q8NHC4 309 aa16.56■□□□□ 0.24
CHRNA4-209ENST00000627000 CNTNAP3BQ96NU0 1288 aa16.56■□□□□ 0.24
CHRNA4-209ENST00000627000 CNTNAP3Q9BZ76 1288 aa16.56■□□□□ 0.24
CHRNA4-209ENST00000627000 ASF1BQ9NVP2 202 aa16.56■□□□□ 0.24
CHRNA4-209ENST00000627000 KIAA2026Q5HYC2 2103 aa16.56■□□□□ 0.24
CHRNA4-209ENST00000627000 A0A1B0GWJ7 208 aa16.55■□□□□ 0.24
CHRNA4-209ENST00000627000 ATP6V1G2-DDX39BF2Z307 99 aa16.55■□□□□ 0.24
CHRNA4-209ENST00000627000 CCKARP32238 428 aa16.55■□□□□ 0.24
CHRNA4-209ENST00000627000 H1FOOQ8IZA3 346 aaPredicted RBP16.55■□□□□ 0.24
CHRNA4-209ENST00000627000 H7C1Q1 480 aa16.55■□□□□ 0.24
CHRNA4-209ENST00000627000 PTBP3O95758 552 aaKnown RBP16.55■□□□□ 0.24
CHRNA4-209ENST00000627000 SCGB1D2O95969 90 aa16.55■□□□□ 0.24
CHRNA4-209ENST00000627000 NKX6-1P78426 367 aaPredicted RBP16.55■□□□□ 0.24
CHRNA4-209ENST00000627000 SPRNQ5BIV9 151 aa16.55■□□□□ 0.24
CHRNA4-209ENST00000627000 FIP1L1Q6UN15 594 aaKnown RBP16.55■□□□□ 0.24
CHRNA4-209ENST00000627000 FAM185AQ8N0U4 392 aa16.55■□□□□ 0.24
CHRNA4-209ENST00000627000 SLC35G3Q8N808 338 aa16.55■□□□□ 0.24
CHRNA4-209ENST00000627000 TAAR3PQ9P1P4 343 aa16.55■□□□□ 0.24
CHRNA4-209ENST00000627000 METRNQ9UJH8 293 aa16.55■□□□□ 0.24
CHRNA4-209ENST00000627000 ERRFI1Q9UJM3 462 aaPredicted RBP16.55■□□□□ 0.24
CHRNA4-209ENST00000627000 OR2W1Q9Y3N9 320 aa16.55■□□□□ 0.24
CHRNA4-209ENST00000627000 LSM5Q9Y4Y9 91 aaKnown RBP16.55■□□□□ 0.24
CHRNA4-209ENST00000627000 TNFSF12O43508 249 aa16.54■□□□□ 0.24
CHRNA4-209ENST00000627000 ZNF250P15622 560 aa16.54■□□□□ 0.24
CHRNA4-209ENST00000627000 TMEM268Q5VZI3 342 aa16.54■□□□□ 0.24
CHRNA4-209ENST00000627000 SREK1IP1Q8N9Q2 155 aaPredicted RBP16.54■□□□□ 0.24
CHRNA4-209ENST00000627000 USB1Q9BQ65 265 aaKnown RBP16.54■□□□□ 0.24
CHRNA4-209ENST00000627000 PET100P0DJ07 73 aa16.54■□□□□ 0.24
CHRNA4-209ENST00000627000 ZP3P21754 424 aa16.54■□□□□ 0.24
CHRNA4-209ENST00000627000 GLRXP35754 106 aa16.54■□□□□ 0.24
CHRNA4-209ENST00000627000 RND3P61587 244 aa16.54■□□□□ 0.24
CHRNA4-209ENST00000627000 OR52M1Q8NGK5 317 aa16.54■□□□□ 0.24
CHRNA4-209ENST00000627000 AQP10Q96PS8 301 aa16.54■□□□□ 0.24
CHRNA4-209ENST00000627000 AIFM2Q9BRQ8 373 aa16.54■□□□□ 0.24
CHRNA4-209ENST00000627000 TMEM222Q9H0R3 208 aa16.54■□□□□ 0.24
CHRNA4-209ENST00000627000 MED9Q9NWA0 146 aa16.54■□□□□ 0.24
CHRNA4-209ENST00000627000 TEX46H3BTG2 121 aa16.53■□□□□ 0.24
CHRNA4-209ENST00000627000 IGHV3-13P01766 116 aa16.53■□□□□ 0.24
CHRNA4-209ENST00000627000 LMO1P25800 156 aa16.53■□□□□ 0.24
CHRNA4-209ENST00000627000 MOB1BQ7L9L4 216 aa16.53■□□□□ 0.24
CHRNA4-209ENST00000627000 LRRC29Q8WV35 223 aa16.53■□□□□ 0.24
CHRNA4-209ENST00000627000 TMEM171Q8WVE6 324 aa16.53■□□□□ 0.24
CHRNA4-209ENST00000627000 CYTL1Q9NRR1 136 aa16.53■□□□□ 0.24
CHRNA4-209ENST00000627000 MBNL3Q9NUK0 354 aaKnown RBP16.53■□□□□ 0.24
CHRNA4-209ENST00000627000 GLS2Q9UI32 602 aa16.53■□□□□ 0.24
CHRNA4-209ENST00000627000 UBE2J1Q9Y385 318 aaPredicted RBP16.53■□□□□ 0.24
CHRNA4-209ENST00000627000 WIPI2Q9Y4P8 454 aa16.53■□□□□ 0.24
CHRNA4-209ENST00000627000 MBPP02686 304 aaPredicted RBP16.53■□□□□ 0.24
CHRNA4-209ENST00000627000 CTRB1P17538 263 aa16.53■□□□□ 0.24
CHRNA4-209ENST00000627000 EGR1P18146 543 aa16.53■□□□□ 0.24
CHRNA4-209ENST00000627000 C3orf36Q3SXR2 165 aa16.53■□□□□ 0.24
CHRNA4-209ENST00000627000 CTRB2Q6GPI1 263 aa16.53■□□□□ 0.24
CHRNA4-209ENST00000627000 FAM122CQ6P4D5 195 aa16.53■□□□□ 0.24
CHRNA4-209ENST00000627000 PARP12Q9H0J9 701 aaKnown RBP16.53■□□□□ 0.24
CHRNA4-209ENST00000627000 TAF9BQ9HBM6 251 aa16.53■□□□□ 0.24
CHRNA4-209ENST00000627000 FBXO9Q9UK97 447 aaPredicted RBP16.53■□□□□ 0.24
CHRNA4-209ENST00000627000 ZNF835Q9Y2P0 537 aa16.53■□□□□ 0.24
CHRNA4-209ENST00000627000 DEDDO75618 318 aa16.52■□□□□ 0.24
CHRNA4-209ENST00000627000 SCO1O75880 301 aa16.52■□□□□ 0.24
CHRNA4-209ENST00000627000 NUP62P37198 522 aaPredicted RBP16.52■□□□□ 0.24
CHRNA4-209ENST00000627000 KLF3P57682 345 aaPredicted RBP16.52■□□□□ 0.24
CHRNA4-209ENST00000627000 AESQ08117 197 aa16.52■□□□□ 0.24
CHRNA4-209ENST00000627000 MRGPRGQ86SM5 289 aa16.52■□□□□ 0.24
CHRNA4-209ENST00000627000 RAXQ9Y2V3 346 aa16.52■□□□□ 0.24
CHRNA4-209ENST00000627000 PGLYRP1O75594 196 aaPredicted RBP16.51■□□□□ 0.23
CHRNA4-209ENST00000627000 TSPAN9O75954 239 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms