RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 PDZD9Q8IXQ8 264 aa15.64■□□□□ 0.09
SQSTM1-216ENST00000626660 OR13D1Q8NGV5 346 aa15.64■□□□□ 0.09
SQSTM1-216ENST00000626660 TNFRSF14Q92956 283 aa15.64■□□□□ 0.09
SQSTM1-216ENST00000626660 KCNIP1Q9NZI2 227 aa15.64■□□□□ 0.09
SQSTM1-216ENST00000626660 AK3Q9UIJ7 227 aa15.64■□□□□ 0.09
SQSTM1-216ENST00000626660 CEPT1Q9Y6K0 416 aa15.64■□□□□ 0.09
SQSTM1-216ENST00000626660 JMJD1CQ15652 2540 aa15.64■□□□□ 0.09
SQSTM1-216ENST00000626660 A0A075B6Q4 140 aa15.63■□□□□ 0.09
SQSTM1-216ENST00000626660 RNASEK-C17orf49H0YIS7 233 aa15.63■□□□□ 0.09
SQSTM1-216ENST00000626660 H3BMQ9 156 aa15.63■□□□□ 0.09
SQSTM1-216ENST00000626660 CD3GP09693 182 aa15.63■□□□□ 0.09
SQSTM1-216ENST00000626660 CGB3P0DN86 165 aa15.63■□□□□ 0.09
SQSTM1-216ENST00000626660 CGB7P0DN87 165 aa15.63■□□□□ 0.09
SQSTM1-216ENST00000626660 HIST1H1DP16402 221 aaKnown RBP15.63■□□□□ 0.09
SQSTM1-216ENST00000626660 ZNF182P17025 639 aaPredicted RBP15.63■□□□□ 0.09
SQSTM1-216ENST00000626660 COX7A1P24310 79 aa15.63■□□□□ 0.09
SQSTM1-216ENST00000626660 UBE2E1P51965 193 aa15.63■□□□□ 0.09
SQSTM1-216ENST00000626660 DLX1P56177 255 aa15.63■□□□□ 0.09
SQSTM1-216ENST00000626660 PRB3Q04118 309 aaPredicted RBP15.63■□□□□ 0.09
SQSTM1-216ENST00000626660 PLAC9Q5JTB6 97 aa15.63■□□□□ 0.09
SQSTM1-216ENST00000626660 UBE2NLQ5JXB2 153 aa15.63■□□□□ 0.09
SQSTM1-216ENST00000626660 MZT2AQ6P582 158 aa15.63■□□□□ 0.09
SQSTM1-216ENST00000626660 SAMD12Q8N8I0 201 aa15.63■□□□□ 0.09
SQSTM1-216ENST00000626660 MRPL30Q8TCC3 161 aaKnown RBP15.63■□□□□ 0.09
SQSTM1-216ENST00000626660 CMSS1Q9BQ75 279 aaKnown RBP15.63■□□□□ 0.09
SQSTM1-216ENST00000626660 ZNF69Q9UC07 566 aa15.63■□□□□ 0.09
SQSTM1-216ENST00000626660 A0A0A6YYH2 397 aa15.62■□□□□ 0.09
SQSTM1-216ENST00000626660 A6NJ64 397 aa15.62■□□□□ 0.09
SQSTM1-216ENST00000626660 SERPINE3A8MV23 424 aa15.62■□□□□ 0.09
SQSTM1-216ENST00000626660 ORC5O43913 435 aa15.62■□□□□ 0.09
SQSTM1-216ENST00000626660 C17orf58Q2M2W7 97 aa15.62■□□□□ 0.09
SQSTM1-216ENST00000626660 BRD3OSQ6XYD6 125 aa15.62■□□□□ 0.09
SQSTM1-216ENST00000626660 MOB1BQ7L9L4 216 aa15.62■□□□□ 0.09
SQSTM1-216ENST00000626660 RTN4RL2Q86UN3 420 aa15.62■□□□□ 0.09
SQSTM1-216ENST00000626660 PNKDQ8N490 385 aa15.62■□□□□ 0.09
SQSTM1-216ENST00000626660 ARL11Q969Q4 196 aa15.62■□□□□ 0.09
SQSTM1-216ENST00000626660 SLC25A38Q96DW6 304 aa15.62■□□□□ 0.09
SQSTM1-216ENST00000626660 SUCNR1Q9BXA5 334 aa15.62■□□□□ 0.09
SQSTM1-216ENST00000626660 TMEM133Q9H2Q1 129 aa15.62■□□□□ 0.09
SQSTM1-216ENST00000626660 C12orf4Q9NQ89 552 aa15.62■□□□□ 0.09
SQSTM1-216ENST00000626660 DIABLOQ9NR28 239 aa15.62■□□□□ 0.09
SQSTM1-216ENST00000626660 IDI2-AS1Q9NZ38 188 aa15.62■□□□□ 0.09
SQSTM1-216ENST00000626660 COMMD3Q9UBI1 195 aa15.62■□□□□ 0.09
SQSTM1-216ENST00000626660 MFNGO00587 321 aa15.61■□□□□ 0.09
SQSTM1-216ENST00000626660 SPINT2O43291 252 aa15.61■□□□□ 0.09
SQSTM1-216ENST00000626660 NAPSAO96009 420 aa15.61■□□□□ 0.09
SQSTM1-216ENST00000626660 IFNA2P01563 188 aa15.61■□□□□ 0.09
SQSTM1-216ENST00000626660 GNB3P16520 340 aa15.61■□□□□ 0.09
SQSTM1-216ENST00000626660 OMGP23515 440 aa15.61■□□□□ 0.09
SQSTM1-216ENST00000626660 SSTR5P35346 364 aa15.61■□□□□ 0.09
SQSTM1-216ENST00000626660 RUSC1-AS1Q66K80 236 aa15.61■□□□□ 0.09
SQSTM1-216ENST00000626660 C9orf139Q6ZV77 190 aa15.61■□□□□ 0.09
SQSTM1-216ENST00000626660 ZNF554Q86TJ5 538 aa15.61■□□□□ 0.09
SQSTM1-216ENST00000626660 OR10A7Q8NGE5 316 aa15.61■□□□□ 0.09
SQSTM1-216ENST00000626660 RFESDQ8TAC1 157 aa15.61■□□□□ 0.09
SQSTM1-216ENST00000626660 SETD6Q8TBK2 473 aa15.61■□□□□ 0.09
SQSTM1-216ENST00000626660 C22orf15Q8WYQ4 148 aa15.61■□□□□ 0.09
SQSTM1-216ENST00000626660 S100A16Q96FQ6 103 aaKnown RBP15.61■□□□□ 0.09
SQSTM1-216ENST00000626660 CYYR1Q96J86 154 aa15.61■□□□□ 0.09
SQSTM1-216ENST00000626660 ABCG5Q9H222 651 aa15.61■□□□□ 0.09
SQSTM1-216ENST00000626660 OCEL1Q9H607 264 aa15.61■□□□□ 0.09
SQSTM1-216ENST00000626660 LINC00574Q9H8X3 128 aa15.61■□□□□ 0.09
SQSTM1-216ENST00000626660 A0A1W2PRD5 423 aa15.6■□□□□ 0.09
SQSTM1-216ENST00000626660 A0A1W2PRF3 423 aa15.6■□□□□ 0.09
SQSTM1-216ENST00000626660 A0A1W2PRM7 423 aa15.6■□□□□ 0.09
SQSTM1-216ENST00000626660 POM121CA8CG34 1229 aa15.6■□□□□ 0.09
SQSTM1-216ENST00000626660 NPIPB11E5RHQ5 1161 aa15.6■□□□□ 0.09
SQSTM1-216ENST00000626660 NPFFO15130 113 aa15.6■□□□□ 0.09
SQSTM1-216ENST00000626660 MMP23AO75900 390 aa15.6■□□□□ 0.09
SQSTM1-216ENST00000626660 RCC1P18754 421 aaPredicted RBP15.6■□□□□ 0.09
SQSTM1-216ENST00000626660 NFYBP25208 207 aa15.6■□□□□ 0.09
SQSTM1-216ENST00000626660 ARFRP1Q13795 201 aa15.6■□□□□ 0.09
SQSTM1-216ENST00000626660 CDNFQ49AH0 187 aa15.6■□□□□ 0.09
SQSTM1-216ENST00000626660 OLFML2AQ68BL7 652 aa15.6■□□□□ 0.09
SQSTM1-216ENST00000626660 HCP5Q6MZN7 132 aa15.6■□□□□ 0.09
SQSTM1-216ENST00000626660 KIRREL1Q96J84 757 aa15.6■□□□□ 0.09
SQSTM1-216ENST00000626660 ZMAT3Q9HA38 289 aaKnown RBP15.6■□□□□ 0.09
SQSTM1-216ENST00000626660 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP15.6■□□□□ 0.09
SQSTM1-216ENST00000626660 MBNL3Q9NUK0 354 aaKnown RBP15.6■□□□□ 0.09
SQSTM1-216ENST00000626660 CCDC59Q9P031 241 aaKnown RBP15.6■□□□□ 0.09
SQSTM1-216ENST00000626660 RSL24D1Q9UHA3 163 aaKnown RBP15.6■□□□□ 0.09
SQSTM1-216ENST00000626660 MGAT4AQ9UM21 535 aa15.6■□□□□ 0.09
SQSTM1-216ENST00000626660 MXRA5Q9NR99 2828 aa15.59■□□□□ 0.09
SQSTM1-216ENST00000626660 TRBV6-6A0A0A6YYG2 114 aa15.59■□□□□ 0.09
SQSTM1-216ENST00000626660 C12orf77C9JDV5 145 aa15.59■□□□□ 0.09
SQSTM1-216ENST00000626660 C15orf65H3BRN8 121 aa15.59■□□□□ 0.09
SQSTM1-216ENST00000626660 GSTP1P09211 210 aaKnown RBP15.59■□□□□ 0.09
SQSTM1-216ENST00000626660 TALDO1P37837 337 aa15.59■□□□□ 0.09
SQSTM1-216ENST00000626660 LGALS4P56470 323 aa15.59■□□□□ 0.09
SQSTM1-216ENST00000626660 LTC4SQ16873 150 aa15.59■□□□□ 0.09
SQSTM1-216ENST00000626660 TMEM30BQ3MIR4 351 aa15.59■□□□□ 0.09
SQSTM1-216ENST00000626660 MIDNQ504T8 468 aa15.59■□□□□ 0.09
SQSTM1-216ENST00000626660 DYNC2LI1Q8TCX1 351 aa15.59■□□□□ 0.09
SQSTM1-216ENST00000626660 ZNF418Q8TF45 676 aaPredicted RBP15.59■□□□□ 0.09
SQSTM1-216ENST00000626660 CMTM3Q96MX0 182 aa15.59■□□□□ 0.09
SQSTM1-216ENST00000626660 SLC6A7Q99884 636 aa15.59■□□□□ 0.09
SQSTM1-216ENST00000626660 HDHD3Q9BSH5 251 aaPredicted RBP15.59■□□□□ 0.09
SQSTM1-216ENST00000626660 CLEC7AQ9BXN2 247 aa15.59■□□□□ 0.09
SQSTM1-216ENST00000626660 RBM38Q9H0Z9 239 aaKnown RBP15.59■□□□□ 0.09
SQSTM1-216ENST00000626660 TAF9BQ9HBM6 251 aa15.59■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms