RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 ERRFI1Q9UJM3 462 aaPredicted RBP9.02□□□□□ -0.97
CUX1-221ENST00000622516 TUBD1Q9UJT1 453 aa9.02□□□□□ -0.97
CUX1-221ENST00000622516 ATP23Q9Y6H3 246 aa9.02□□□□□ -0.97
CUX1-221ENST00000622516 KLK10O43240 276 aa9.01□□□□□ -0.97
CUX1-221ENST00000622516 NXPH2O95156 264 aa9.01□□□□□ -0.97
CUX1-221ENST00000622516 OR2H2O95918 312 aa9.01□□□□□ -0.97
CUX1-221ENST00000622516 DEFA5Q01523 94 aa9.01□□□□□ -0.97
CUX1-221ENST00000622516 NHLH2Q02577 135 aa9.01□□□□□ -0.97
CUX1-221ENST00000622516 IZUMO4Q1ZYL8 232 aa9.01□□□□□ -0.97
CUX1-221ENST00000622516 PCSK4Q6UW60 755 aa9.01□□□□□ -0.97
CUX1-221ENST00000622516 HSD17B13Q7Z5P4 300 aaPredicted RBP9.01□□□□□ -0.97
CUX1-221ENST00000622516 WDR31Q8NA23 367 aa9.01□□□□□ -0.97
CUX1-221ENST00000622516 OR51H1Q8NH63 302 aa9.01□□□□□ -0.97
CUX1-221ENST00000622516 STOML3Q8TAV4 291 aa9.01□□□□□ -0.97
CUX1-221ENST00000622516 SARAFQ96BY9 339 aa9.01□□□□□ -0.97
CUX1-221ENST00000622516 PHYHIPLQ96FC7 376 aa9.01□□□□□ -0.97
CUX1-221ENST00000622516 TMEM68Q96MH6 324 aa9.01□□□□□ -0.97
CUX1-221ENST00000622516 RTL8AQ9BWD3 113 aa9.01□□□□□ -0.97
CUX1-221ENST00000622516 SAV1Q9H4B6 383 aaPredicted RBP9.01□□□□□ -0.97
CUX1-221ENST00000622516 TAF9BQ9HBM6 251 aa9.01□□□□□ -0.97
CUX1-221ENST00000622516 CHD3Q12873 2000 aaKnown RBP9.01□□□□□ -0.97
CUX1-221ENST00000622516 PROB1E7EW31 1015 aa9.01□□□□□ -0.97
CUX1-221ENST00000622516 AQP7O14520 342 aa9.01□□□□□ -0.97
CUX1-221ENST00000622516 FAM157CP0CG43 387 aa9.01□□□□□ -0.97
CUX1-221ENST00000622516 ZNF273Q14593 569 aa9.01□□□□□ -0.97
CUX1-221ENST00000622516 OR8G1Q15617 311 aa9.01□□□□□ -0.97
CUX1-221ENST00000622516 ACSF3Q4G176 576 aaPredicted RBP9.01□□□□□ -0.97
CUX1-221ENST00000622516 SEM1Q6ZVN7 128 aa9.01□□□□□ -0.97
CUX1-221ENST00000622516 LGI3Q8N145 548 aa9.01□□□□□ -0.97
CUX1-221ENST00000622516 C12orf57Q99622 126 aa9.01□□□□□ -0.97
CUX1-221ENST00000622516 SUCNR1Q9BXA5 334 aa9.01□□□□□ -0.97
CUX1-221ENST00000622516 OPA3Q9H6K4 179 aa9.01□□□□□ -0.97
CUX1-221ENST00000622516 PLA2G2EQ9NZK7 142 aa9.01□□□□□ -0.97
CUX1-221ENST00000622516 ZDHHC8Q9ULC8 765 aa9.01□□□□□ -0.97
CUX1-221ENST00000622516 AMDHD2Q9Y303 409 aa9.01□□□□□ -0.97
CUX1-221ENST00000622516 PRELID3BQ9Y3B1 194 aa9.01□□□□□ -0.97
CUX1-221ENST00000622516 POLEQ07864 2286 aa9.01□□□□□ -0.97
CUX1-221ENST00000622516 PKDREJQ9NTG1 2253 aa9□□□□□ -0.97
CUX1-221ENST00000622516 FAM90A10PA6NDY2 464 aa9□□□□□ -0.97
CUX1-221ENST00000622516 FAM90A18PA6NE21 464 aa9□□□□□ -0.97
CUX1-221ENST00000622516 FAM90A16PA6NEW6 464 aa9□□□□□ -0.97
CUX1-221ENST00000622516 FAM90A20PA6NIJ5 464 aa9□□□□□ -0.97
CUX1-221ENST00000622516 FAM90A8PA6NJQ4 464 aa9□□□□□ -0.97
CUX1-221ENST00000622516 FAM90A7PA6NKC0 464 aa9□□□□□ -0.97
CUX1-221ENST00000622516 A6NLC8 198 aa9□□□□□ -0.97
CUX1-221ENST00000622516 FAM90A22PA8MWA6 464 aa9□□□□□ -0.97
CUX1-221ENST00000622516 FAM90A12PA8MX19 464 aa9□□□□□ -0.97
CUX1-221ENST00000622516 FAM90A5PA8MXJ8 464 aa9□□□□□ -0.97
CUX1-221ENST00000622516 FAM90A23PA8MXZ1 464 aa9□□□□□ -0.97
CUX1-221ENST00000622516 J3QT63 122 aa9□□□□□ -0.97
CUX1-221ENST00000622516 MLNRO43193 412 aa9□□□□□ -0.97
CUX1-221ENST00000622516 FAM90A15PP0C7V4 464 aa9□□□□□ -0.97
CUX1-221ENST00000622516 FAM90A13PP0C7W8 464 aa9□□□□□ -0.97
CUX1-221ENST00000622516 FAM90A14PP0C7W9 464 aa9□□□□□ -0.97
CUX1-221ENST00000622516 FAM90A24PP0C7X0 464 aa9□□□□□ -0.97
CUX1-221ENST00000622516 CECR9P0C854 216 aa9□□□□□ -0.97
CUX1-221ENST00000622516 OMGP23515 440 aa9□□□□□ -0.97
CUX1-221ENST00000622516 PRAMEF6Q5VXH4 476 aa9□□□□□ -0.97
CUX1-221ENST00000622516 Q6P435 159 aa9□□□□□ -0.97
CUX1-221ENST00000622516 CFAP161Q6P656 301 aa9□□□□□ -0.97
CUX1-221ENST00000622516 ZNF695Q8IW36 515 aa9□□□□□ -0.97
CUX1-221ENST00000622516 IGF2RP11717 2491 aa9□□□□□ -0.97
CUX1-221ENST00000622516 TNFSF13O75888 250 aa9□□□□□ -0.97
CUX1-221ENST00000622516 KCNJ3P48549 501 aa9□□□□□ -0.97
CUX1-221ENST00000622516 GUSBP1Q15486 140 aa9□□□□□ -0.97
CUX1-221ENST00000622516 CXorf66Q5JRM2 361 aaPredicted RBP9□□□□□ -0.97
CUX1-221ENST00000622516 ZADH2Q8N4Q0 377 aa9□□□□□ -0.97
CUX1-221ENST00000622516 TPRX1Q8N7U7 411 aa9□□□□□ -0.97
CUX1-221ENST00000622516 CCDC71LQ8N9Z2 235 aa9□□□□□ -0.97
CUX1-221ENST00000622516 OR10J5Q8NHC4 309 aa9□□□□□ -0.97
CUX1-221ENST00000622516 STARD4Q96DR4 205 aa9□□□□□ -0.97
CUX1-221ENST00000622516 TMEM222Q9H0R3 208 aa9□□□□□ -0.97
CUX1-221ENST00000622516 TRAPPC2LQ9UL33 140 aa9□□□□□ -0.97
CUX1-221ENST00000622516 RFNGQ9Y644 331 aa9□□□□□ -0.97
CUX1-221ENST00000622516 KIR2DS1A0A191URI9 304 aa9□□□□□ -0.97
CUX1-221ENST00000622516 PRR33A8MZF0 331 aa9□□□□□ -0.97
CUX1-221ENST00000622516 KRBOX1C9JBD0 128 aa9□□□□□ -0.97
CUX1-221ENST00000622516 F8W036 122 aa9□□□□□ -0.97
CUX1-221ENST00000622516 H7C1Q1 480 aa9□□□□□ -0.97
CUX1-221ENST00000622516 KIR2DS4P43632 304 aa9□□□□□ -0.97
CUX1-221ENST00000622516 AKR1D1P51857 326 aa9□□□□□ -0.97
CUX1-221ENST00000622516 UCP3P55916 312 aa9□□□□□ -0.97
CUX1-221ENST00000622516 ZNF169Q14929 603 aaPredicted RBP9□□□□□ -0.97
CUX1-221ENST00000622516 KIR2DS1Q14954 304 aa9□□□□□ -0.97
CUX1-221ENST00000622516 MAJINQ3KP22 176 aa9□□□□□ -0.97
CUX1-221ENST00000622516 RNF141Q8WVD5 230 aa9□□□□□ -0.97
CUX1-221ENST00000622516 GLRX2Q9NS18 164 aa9□□□□□ -0.97
CUX1-221ENST00000622516 PPP1R3CQ9UQK1 317 aa9□□□□□ -0.97
CUX1-221ENST00000622516 FAM96BQ9Y3D0 163 aa9□□□□□ -0.97
CUX1-221ENST00000622516 SPTBN4Q9H254 2564 aa9□□□□□ -0.97
CUX1-221ENST00000622516 ZNF891A8MT65 544 aaPredicted RBP8.99□□□□□ -0.97
CUX1-221ENST00000622516 GPR31O00270 319 aa8.99□□□□□ -0.97
CUX1-221ENST00000622516 HSPA12AO43301 675 aa8.99□□□□□ -0.97
CUX1-221ENST00000622516 ADAM20O43506 726 aa8.99□□□□□ -0.97
CUX1-221ENST00000622516 PSPNO60542 156 aa8.99□□□□□ -0.97
CUX1-221ENST00000622516 EPHA1P21709 976 aa8.99□□□□□ -0.97
CUX1-221ENST00000622516 INO80CQ6PI98 192 aaPredicted RBP8.99□□□□□ -0.97
CUX1-221ENST00000622516 PLK3Q9H4B4 646 aa8.99□□□□□ -0.97
CUX1-221ENST00000622516 WFDC1Q9HC57 220 aa8.99□□□□□ -0.97
CUX1-221ENST00000622516 DNAJB11Q9UBS4 358 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 139.5 ms