RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 GSTP1P09211 210 aaKnown RBP16.17■□□□□ 0.18
UPF3A-211ENST00000618700 ELK1P19419 428 aa16.17■□□□□ 0.18
UPF3A-211ENST00000618700 CDNFQ49AH0 187 aa16.17■□□□□ 0.18
UPF3A-211ENST00000618700 ZNF880Q6PDB4 577 aa16.17■□□□□ 0.18
UPF3A-211ENST00000618700 TRAPPC6BQ86SZ2 158 aa16.17■□□□□ 0.18
UPF3A-211ENST00000618700 OR4K15Q8NH41 348 aa16.17■□□□□ 0.18
UPF3A-211ENST00000618700 MRGPRDQ8TDS7 321 aa16.17■□□□□ 0.18
UPF3A-211ENST00000618700 PHF21AQ96BD5 680 aa16.17■□□□□ 0.18
UPF3A-211ENST00000618700 S100A16Q96FQ6 103 aaKnown RBP16.17■□□□□ 0.18
UPF3A-211ENST00000618700 HDHD3Q9BSH5 251 aaPredicted RBP16.17■□□□□ 0.18
UPF3A-211ENST00000618700 GAL3ST2Q9H3Q3 398 aa16.17■□□□□ 0.18
UPF3A-211ENST00000618700 RIMS4Q9H426 269 aaPredicted RBP16.17■□□□□ 0.18
UPF3A-211ENST00000618700 ZFAND3Q9H8U3 227 aa16.17■□□□□ 0.18
UPF3A-211ENST00000618700 LINC00574Q9H8X3 128 aa16.17■□□□□ 0.18
UPF3A-211ENST00000618700 TRAV39A0A0B4J263 110 aa16.16■□□□□ 0.18
UPF3A-211ENST00000618700 ZNF729A6NN14 1252 aaPredicted RBP16.16■□□□□ 0.18
UPF3A-211ENST00000618700 CTDSP2O14595 271 aa16.16■□□□□ 0.18
UPF3A-211ENST00000618700 TOX4O94842 621 aa16.16■□□□□ 0.18
UPF3A-211ENST00000618700 C17orf58Q2M2W7 97 aa16.16■□□□□ 0.18
UPF3A-211ENST00000618700 MCFD2Q8NI22 146 aa16.16■□□□□ 0.18
UPF3A-211ENST00000618700 CMSS1Q9BQ75 279 aaKnown RBP16.16■□□□□ 0.18
UPF3A-211ENST00000618700 METTL8Q9H825 291 aaKnown RBP16.16■□□□□ 0.18
UPF3A-211ENST00000618700 CALYQ9NYX4 217 aa16.16■□□□□ 0.18
UPF3A-211ENST00000618700 ELF5Q9UKW6 265 aaPredicted RBP16.16■□□□□ 0.18
UPF3A-211ENST00000618700 TRAPPC2LQ9UL33 140 aa16.16■□□□□ 0.18
UPF3A-211ENST00000618700 A3GALT2U3KPV4 340 aa16.16■□□□□ 0.18
UPF3A-211ENST00000618700 KIAA2026Q5HYC2 2103 aa16.15■□□□□ 0.18
UPF3A-211ENST00000618700 TRAV18A0A075B6X5 111 aa16.15■□□□□ 0.18
UPF3A-211ENST00000618700 KBTBD11-OT1A0A1B0GTJ5 212 aa16.15■□□□□ 0.18
UPF3A-211ENST00000618700 TMEM235A6NFC5 223 aa16.15■□□□□ 0.18
UPF3A-211ENST00000618700 CLPXO76031 633 aa16.15■□□□□ 0.18
UPF3A-211ENST00000618700 FSHBP01225 129 aa16.15■□□□□ 0.18
UPF3A-211ENST00000618700 RCC1P18754 421 aaPredicted RBP16.15■□□□□ 0.18
UPF3A-211ENST00000618700 SSTR5P35346 364 aa16.15■□□□□ 0.18
UPF3A-211ENST00000618700 FAM120AOSQ5T036 256 aa16.15■□□□□ 0.18
UPF3A-211ENST00000618700 HACD4Q5VWC8 232 aa16.15■□□□□ 0.18
UPF3A-211ENST00000618700 Q71RC1 249 aaPredicted RBP16.15■□□□□ 0.18
UPF3A-211ENST00000618700 MOB1BQ7L9L4 216 aa16.15■□□□□ 0.18
UPF3A-211ENST00000618700 VMO1Q7Z5L0 202 aa16.15■□□□□ 0.18
UPF3A-211ENST00000618700 LAX1Q8IWV1 398 aa16.15■□□□□ 0.18
UPF3A-211ENST00000618700 ZNF565Q8N9K5 539 aa16.15■□□□□ 0.18
UPF3A-211ENST00000618700 CCDC107Q8WV48 283 aa16.15■□□□□ 0.18
UPF3A-211ENST00000618700 TNFRSF14Q92956 283 aa16.15■□□□□ 0.18
UPF3A-211ENST00000618700 PCGF1Q9BSM1 259 aa16.15■□□□□ 0.18
UPF3A-211ENST00000618700 C6orf62Q9GZU0 229 aaPredicted RBP16.15■□□□□ 0.18
UPF3A-211ENST00000618700 hCG_1809904A0A1W2PP81 198 aa16.14■□□□□ 0.17
UPF3A-211ENST00000618700 A0A1W2PPE2 198 aa16.14■□□□□ 0.17
UPF3A-211ENST00000618700 A0A1W2PR64 198 aa16.14■□□□□ 0.17
UPF3A-211ENST00000618700 A0A1W2PRV1 198 aa16.14■□□□□ 0.17
UPF3A-211ENST00000618700 POM121CA8CG34 1229 aa16.14■□□□□ 0.17
UPF3A-211ENST00000618700 NPIPB11E5RHQ5 1161 aa16.14■□□□□ 0.17
UPF3A-211ENST00000618700 C15orf65H3BRN8 121 aa16.14■□□□□ 0.17
UPF3A-211ENST00000618700 RGS5O15539 181 aa16.14■□□□□ 0.17
UPF3A-211ENST00000618700 ORC5O43913 435 aa16.14■□□□□ 0.17
UPF3A-211ENST00000618700 MMP23AO75900 390 aa16.14■□□□□ 0.17
UPF3A-211ENST00000618700 MELTFP08582 738 aa16.14■□□□□ 0.17
UPF3A-211ENST00000618700 CD3GP09693 182 aa16.14■□□□□ 0.17
UPF3A-211ENST00000618700 GZMHP20718 246 aa16.14■□□□□ 0.17
UPF3A-211ENST00000618700 PRTN3P24158 256 aa16.14■□□□□ 0.17
UPF3A-211ENST00000618700 TAS2R20P59543 309 aa16.14■□□□□ 0.17
UPF3A-211ENST00000618700 ERVFRD-1P60508 538 aa16.14■□□□□ 0.17
UPF3A-211ENST00000618700 PNLIPRP3Q17RR3 467 aa16.14■□□□□ 0.17
UPF3A-211ENST00000618700 TMEM69Q5SWH9 247 aa16.14■□□□□ 0.17
UPF3A-211ENST00000618700 C6orf183Q5T699 404 aa16.14■□□□□ 0.17
UPF3A-211ENST00000618700 TRAT1Q6PIZ9 186 aa16.14■□□□□ 0.17
UPF3A-211ENST00000618700 HEPN1Q6WQI6 88 aa16.14■□□□□ 0.17
UPF3A-211ENST00000618700 ZNF554Q86TJ5 538 aa16.14■□□□□ 0.17
UPF3A-211ENST00000618700 IZUMO1Q8IYV9 350 aa16.14■□□□□ 0.17
UPF3A-211ENST00000618700 AUNIPQ9H7T9 357 aa16.14■□□□□ 0.17
UPF3A-211ENST00000618700 CHMP1AQ9HD42 196 aaPredicted RBP16.14■□□□□ 0.17
UPF3A-211ENST00000618700 SIRT7Q9NRC8 400 aa16.14■□□□□ 0.17
UPF3A-211ENST00000618700 FAM25AB3EWG3 89 aa16.13■□□□□ 0.17
UPF3A-211ENST00000618700 FAM25CB3EWG5 89 aa16.13■□□□□ 0.17
UPF3A-211ENST00000618700 FAM25GB3EWG6 89 aa16.13■□□□□ 0.17
UPF3A-211ENST00000618700 C12orf77C9JDV5 145 aa16.13■□□□□ 0.17
UPF3A-211ENST00000618700 FCGR3AP08637 254 aa16.13■□□□□ 0.17
UPF3A-211ENST00000618700 IGHV1-8P0DP01 117 aa16.13■□□□□ 0.17
UPF3A-211ENST00000618700 HOXB4P17483 251 aaPredicted RBP16.13■□□□□ 0.17
UPF3A-211ENST00000618700 DLX1P56177 255 aa16.13■□□□□ 0.17
UPF3A-211ENST00000618700 RIPPLY3P57055 190 aa16.13■□□□□ 0.17
UPF3A-211ENST00000618700 KLF17Q5JT82 389 aaPredicted RBP16.13■□□□□ 0.17
UPF3A-211ENST00000618700 PRAMEF5Q5TYX0 476 aa16.13■□□□□ 0.17
UPF3A-211ENST00000618700 DTX3Q8N9I9 347 aa16.13■□□□□ 0.17
UPF3A-211ENST00000618700 FN1P02751 2386 aaKnown RBP16.12■□□□□ 0.17
UPF3A-211ENST00000618700 SSX5O60225 188 aa16.12■□□□□ 0.17
UPF3A-211ENST00000618700 DTYMKP23919 212 aa16.12■□□□□ 0.17
UPF3A-211ENST00000618700 GDNFP39905 211 aa16.12■□□□□ 0.17
UPF3A-211ENST00000618700 MNDAP41218 407 aa16.12■□□□□ 0.17
UPF3A-211ENST00000618700 HMGN3Q15651 99 aa16.12■□□□□ 0.17
UPF3A-211ENST00000618700 HCP5Q6MZN7 132 aa16.12■□□□□ 0.17
UPF3A-211ENST00000618700 ZNF782Q6ZMW2 699 aaPredicted RBP16.12■□□□□ 0.17
UPF3A-211ENST00000618700 TEX29Q8N6K0 151 aa16.12■□□□□ 0.17
UPF3A-211ENST00000618700 NUDCD2Q8WVJ2 157 aa16.12■□□□□ 0.17
UPF3A-211ENST00000618700 KIRREL1Q96J84 757 aa16.12■□□□□ 0.17
UPF3A-211ENST00000618700 MMP27Q9H306 513 aa16.12■□□□□ 0.17
UPF3A-211ENST00000618700 Q9N2K0 584 aa16.12■□□□□ 0.17
UPF3A-211ENST00000618700 ADAM30Q9UKF2 790 aa16.12■□□□□ 0.17
UPF3A-211ENST00000618700 SESN1Q9Y6P5 492 aa16.12■□□□□ 0.17
UPF3A-211ENST00000618700 TRAV40A0A0B4J280 105 aa16.11■□□□□ 0.17
UPF3A-211ENST00000618700 INAFM1C9JVW0 142 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms