RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 NPIPB11E5RHQ5 1161 aa4.94□□□□□ -1.62
CUX1-220ENST00000607092 SLC33A1O00400 549 aaPredicted RBP4.94□□□□□ -1.62
CUX1-220ENST00000607092 HSD17B6O14756 317 aa4.94□□□□□ -1.62
CUX1-220ENST00000607092 RGS13O14921 159 aa4.94□□□□□ -1.62
CUX1-220ENST00000607092 PRKYO43930 277 aa4.94□□□□□ -1.62
CUX1-220ENST00000607092 MOSP00540 346 aa4.94□□□□□ -1.62
CUX1-220ENST00000607092 IGF1P05019 195 aa4.94□□□□□ -1.62
CUX1-220ENST00000607092 TMEM225BP0DP42 221 aa4.94□□□□□ -1.62
CUX1-220ENST00000607092 SOX6P35712 828 aa4.94□□□□□ -1.62
CUX1-220ENST00000607092 LUMP51884 338 aaPredicted RBP4.94□□□□□ -1.62
CUX1-220ENST00000607092 AQP4P55087 323 aa4.94□□□□□ -1.62
CUX1-220ENST00000607092 SNU13P55769 128 aaKnown RBP4.94□□□□□ -1.62
CUX1-220ENST00000607092 ISL1P61371 349 aa4.94□□□□□ -1.62
CUX1-220ENST00000607092 RUNX1Q01196 453 aa4.94□□□□□ -1.62
CUX1-220ENST00000607092 ZNF616Q08AN1 781 aa4.94□□□□□ -1.62
CUX1-220ENST00000607092 MRPL28Q13084 256 aaKnown RBP4.94□□□□□ -1.62
CUX1-220ENST00000607092 IL13RA2Q14627 380 aa4.94□□□□□ -1.62
CUX1-220ENST00000607092 ATXN7L3Q14CW9 347 aaPredicted RBP4.94□□□□□ -1.62
CUX1-220ENST00000607092 ODF4Q2M2E3 257 aa4.94□□□□□ -1.62
CUX1-220ENST00000607092 NKAPLQ5M9Q1 402 aa4.94□□□□□ -1.62
CUX1-220ENST00000607092 TMEM236Q5W0B7 351 aa4.94□□□□□ -1.62
CUX1-220ENST00000607092 STEAP3Q658P3 488 aa4.94□□□□□ -1.62
CUX1-220ENST00000607092 FAHD1Q6P587 224 aa4.94□□□□□ -1.62
CUX1-220ENST00000607092 MOB3BQ86TA1 216 aa4.94□□□□□ -1.62
CUX1-220ENST00000607092 ZDHHC13Q8IUH4 622 aa4.94□□□□□ -1.62
CUX1-220ENST00000607092 OR10H4Q8NGA5 316 aa4.94□□□□□ -1.62
CUX1-220ENST00000607092 OR8J1Q8NGP2 316 aa4.94□□□□□ -1.62
CUX1-220ENST00000607092 OR6Q1Q8NGQ2 317 aa4.94□□□□□ -1.62
CUX1-220ENST00000607092 TRUB1Q8WWH5 349 aaKnown RBP4.94□□□□□ -1.62
CUX1-220ENST00000607092 ISOC1Q96CN7 298 aa4.94□□□□□ -1.62
CUX1-220ENST00000607092 RNFT2Q96EX2 444 aa4.94□□□□□ -1.62
CUX1-220ENST00000607092 FANCD2OSQ96PS1 177 aa4.94□□□□□ -1.62
CUX1-220ENST00000607092 PRR25Q96S07 402 aa4.94□□□□□ -1.62
CUX1-220ENST00000607092 MBOAT4Q96T53 435 aa4.94□□□□□ -1.62
CUX1-220ENST00000607092 SLC29A1Q99808 456 aa4.94□□□□□ -1.62
CUX1-220ENST00000607092 ASCL2Q99929 193 aa4.94□□□□□ -1.62
CUX1-220ENST00000607092 JAM3Q9BX67 310 aa4.94□□□□□ -1.62
CUX1-220ENST00000607092 OR51J1Q9H342 316 aa4.94□□□□□ -1.62
CUX1-220ENST00000607092 RIBC2Q9H4K1 309 aa4.94□□□□□ -1.62
CUX1-220ENST00000607092 PAK1IP1Q9NWT1 392 aaPredicted RBP4.94□□□□□ -1.62
CUX1-220ENST00000607092 KIF25Q9UIL4 384 aa4.94□□□□□ -1.62
CUX1-220ENST00000607092 GNG8Q9UK08 70 aa4.94□□□□□ -1.62
CUX1-220ENST00000607092 MRPS28Q9Y2Q9 187 aaKnown RBP4.94□□□□□ -1.62
CUX1-220ENST00000607092 LYSTQ99698 3801 aa4.94□□□□□ -1.62
CUX1-220ENST00000607092 DNAH1Q9P2D7 4330 aa4.93□□□□□ -1.62
CUX1-220ENST00000607092 IGHV1-3A0A0C4DH29 117 aa4.93□□□□□ -1.62
CUX1-220ENST00000607092 A0A1W2PQL4 384 aaPredicted RBP4.93□□□□□ -1.62
CUX1-220ENST00000607092 TMEM30CPA0ZSE6 113 aa4.93□□□□□ -1.62
CUX1-220ENST00000607092 FAM172BPA6NC97 362 aa4.93□□□□□ -1.62
CUX1-220ENST00000607092 ZAR1LA6NP61 321 aa4.93□□□□□ -1.62
CUX1-220ENST00000607092 G3V2T6 193 aa4.93□□□□□ -1.62
CUX1-220ENST00000607092 LDLRAD4O15165 306 aa4.93□□□□□ -1.62
CUX1-220ENST00000607092 ORC5O43913 435 aa4.93□□□□□ -1.62
CUX1-220ENST00000607092 ZNF780AO75290 641 aaPredicted RBP4.93□□□□□ -1.62
CUX1-220ENST00000607092 JTBO76095 146 aa4.93□□□□□ -1.62
CUX1-220ENST00000607092 TNFAIP8O95379 198 aa4.93□□□□□ -1.62
CUX1-220ENST00000607092 CSTBP04080 98 aaKnown RBP4.93□□□□□ -1.62
CUX1-220ENST00000607092 HCKP08631 526 aa4.93□□□□□ -1.62
CUX1-220ENST00000607092 HTR1AP08908 422 aa4.93□□□□□ -1.62
CUX1-220ENST00000607092 CGB3P0DN86 165 aa4.93□□□□□ -1.62
CUX1-220ENST00000607092 CGB7P0DN87 165 aa4.93□□□□□ -1.62
CUX1-220ENST00000607092 PRKACGP22612 351 aa4.93□□□□□ -1.62
CUX1-220ENST00000607092 PSMB8P28062 276 aa4.93□□□□□ -1.62
CUX1-220ENST00000607092 CD40LGP29965 261 aa4.93□□□□□ -1.62
CUX1-220ENST00000607092 ALDH3A2P51648 485 aa4.93□□□□□ -1.62
CUX1-220ENST00000607092 ZP1P60852 638 aa4.93□□□□□ -1.62
CUX1-220ENST00000607092 EFNB1P98172 346 aa4.93□□□□□ -1.62
CUX1-220ENST00000607092 GALEQ14376 348 aa4.93□□□□□ -1.62
CUX1-220ENST00000607092 HNF4GQ14541 408 aa4.93□□□□□ -1.62
CUX1-220ENST00000607092 C17orf58Q2M2W7 97 aa4.93□□□□□ -1.62
CUX1-220ENST00000607092 TTC23Q5W5X9 447 aa4.93□□□□□ -1.62
CUX1-220ENST00000607092 ELP2Q6IA86 826 aa4.93□□□□□ -1.62
CUX1-220ENST00000607092 Q6P435 159 aa4.93□□□□□ -1.62
CUX1-220ENST00000607092 FDX2Q6P4F2 183 aa4.93□□□□□ -1.62
CUX1-220ENST00000607092 TRAT1Q6PIZ9 186 aa4.93□□□□□ -1.62
CUX1-220ENST00000607092 LINC00596Q86U02 117 aa4.93□□□□□ -1.62
CUX1-220ENST00000607092 LYPD6Q86Y78 171 aa4.93□□□□□ -1.62
CUX1-220ENST00000607092 SERPINA12Q8IW75 414 aa4.93□□□□□ -1.62
CUX1-220ENST00000607092 STX19Q8N4C7 294 aa4.93□□□□□ -1.62
CUX1-220ENST00000607092 CBR4Q8N4T8 237 aa4.93□□□□□ -1.62
CUX1-220ENST00000607092 DHRSXQ8N5I4 330 aa4.93□□□□□ -1.62
CUX1-220ENST00000607092 FAM71E2Q8N5Q1 922 aa4.93□□□□□ -1.62
CUX1-220ENST00000607092 LINC00311Q8N616 119 aa4.93□□□□□ -1.62
CUX1-220ENST00000607092 TCTEX1D1Q8N7M0 179 aa4.93□□□□□ -1.62
CUX1-220ENST00000607092 PXT1Q8NFP0 134 aa4.93□□□□□ -1.62
CUX1-220ENST00000607092 OR11H1Q8NG94 326 aa4.93□□□□□ -1.62
CUX1-220ENST00000607092 OR1N2Q8NGR9 330 aa4.93□□□□□ -1.62
CUX1-220ENST00000607092 OR13C3Q8NGS6 347 aa4.93□□□□□ -1.62
CUX1-220ENST00000607092 OR13C9Q8NGT0 318 aa4.93□□□□□ -1.62
CUX1-220ENST00000607092 OR2G2Q8NGZ5 317 aa4.93□□□□□ -1.62
CUX1-220ENST00000607092 CNIH3Q8TBE1 160 aa4.93□□□□□ -1.62
CUX1-220ENST00000607092 MRGPRDQ8TDS7 321 aa4.93□□□□□ -1.62
CUX1-220ENST00000607092 FGGYQ96C11 551 aa4.93□□□□□ -1.62
CUX1-220ENST00000607092 COQ2Q96H96 371 aa4.93□□□□□ -1.62
CUX1-220ENST00000607092 S100A13Q99584 98 aa4.93□□□□□ -1.62
CUX1-220ENST00000607092 CIB1Q99828 191 aa4.93□□□□□ -1.62
CUX1-220ENST00000607092 ANKRD60Q9BZ19 345 aa4.93□□□□□ -1.62
CUX1-220ENST00000607092 FAM192AQ9GZU8 254 aa4.93□□□□□ -1.62
CUX1-220ENST00000607092 ZCCHC4Q9H5U6 513 aa4.93□□□□□ -1.62
CUX1-220ENST00000607092 SPACA1Q9HBV2 294 aa4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms