RNA–Protein interactions for RNA: ENST00000602029.1

VRK3-226, Transcript of vaccinia related kinase 3, human

TSL 2

Gene VRK3, Length 578 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-226	ENST00000602029	IGLV1-36	A0A0B4J1U3	117 aa		4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	UBE2QL1	A1L167	161 aa		4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	ZNF850	A8MQ14	1090 aa		4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	ZNF878	C9JN71	531 aa		4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	F2RL2	O00254	374 aa		4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	ZNF593	O00488	134 aa	Predicted RBP	4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	SLC17A2	O00624	439 aa		4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	FABP7	O15540	132 aa		4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	NOS1AP	O75052	506 aa	Predicted RBP	4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	RBBP9	O75884	186 aa		4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	OR2A4	O95047	310 aa		4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	ALDOB	P05062	364 aa		4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	GYPB	P06028	91 aa		4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	H2BFM	P0C1H6	154 aa		4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	AKAIN1	P0CW23	69 aa		4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	CD28	P10747	220 aa		4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	CLU	P10909	449 aa		4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	GLRA1	P23415	457 aa		4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	MPZ	P25189	248 aa		4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	UBE2E1	P51965	193 aa		4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	RIDA	P52758	137 aa	Known RBP	4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	NKX2-5	P52952	324 aa	Predicted RBP	4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	AP2S1	P53680	142 aa	Predicted RBP	4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	OR10A3	P58181	314 aa		4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	TAS2R20	P59543	309 aa		4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	GRB2	P62993	217 aa	Known RBP	4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	DGCR2	P98153	550 aa		4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	FGL1	Q08830	312 aa		4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	EIF2B1	Q14232	305 aa	Known RBP	4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	HABP2	Q14520	560 aa	Predicted RBP	4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	INSL4	Q14641	139 aa		4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	KCNMB1	Q16558	191 aa		4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	BCL2L15	Q5TBC7	163 aa		4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	SAMD5	Q5TGI4	173 aa		4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	TMEM244	Q5VVB8	128 aa		4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	GLT8D1	Q68CQ7	371 aa		4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	ZNF626	Q68DY1	528 aa		4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	TEX261	Q6UWH6	196 aa		4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	GLDN	Q6ZMI3	551 aa	Predicted RBP	4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	COLCA1	Q6ZS62	124 aa		4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	KRT77	Q7Z794	578 aa		4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	LRRTM1	Q86UE6	522 aa		4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	TMEM219	Q86XT9	240 aa		4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	ZNF676	Q8N7Q3	588 aa		4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	OR1M1	Q8NGA1	313 aa		4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	OR5D13	Q8NGL4	314 aa		4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	OR6N2	Q8NGY6	317 aa		4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	OR2G2	Q8NGZ5	317 aa		4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	ZNF431	Q8TF32	576 aa	Predicted RBP	4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	C17orf50	Q8WW18	174 aa		4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	GIMAP1	Q8WWP7	306 aa		4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	PIGC	Q92535	297 aa		4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	TMEM106A	Q96A25	262 aa		4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	OR2A7	Q96R45	310 aa		4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	ZNF436	Q9C0F3	470 aa	Predicted RBP	4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	WDR13	Q9H1Z4	485 aa		4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	HEXA-AS1	Q9H8Q6	139 aa		4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	AURKAIP1	Q9NWT8	199 aa	Predicted RBP	4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	MRM2	Q9UI43	246 aa	Known RBP	4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	KIF25	Q9UIL4	384 aa		4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	GTF2A1L	Q9UNN4	478 aa		4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	COPS3	Q9UNS2	423 aa		4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	RHBDD3	Q9Y3P4	386 aa		4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	HSPB11	Q9Y547	144 aa		4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	MAB21L2	Q9Y586	359 aa		4.24	□□□□□ -1.73
VRK3-226	ENST00000602029		U3KQ87	197 aa		4.24	□□□□□ -1.73
VRK3-226	ENST00000602029	NOTCH3	Q9UM47	2321 aa		4.23	□□□□□ -1.73
VRK3-226	ENST00000602029	LINC00854	A0A1B0GVQ3	168 aa		4.23	□□□□□ -1.73
VRK3-226	ENST00000602029	MEX3A	A1L020	520 aa	Known RBP	4.23	□□□□□ -1.73
VRK3-226	ENST00000602029	OR2AT4	A6NND4	320 aa		4.23	□□□□□ -1.73
VRK3-226	ENST00000602029		M0R1W7	72 aa		4.23	□□□□□ -1.73
VRK3-226	ENST00000602029	SHOX	O15266	292 aa		4.23	□□□□□ -1.73
VRK3-226	ENST00000602029	PLXNB1	O43157	2135 aa		4.23	□□□□□ -1.73
VRK3-226	ENST00000602029	SSNA1	O43805	119 aa		4.23	□□□□□ -1.73
VRK3-226	ENST00000602029	LANCL1	O43813	399 aa		4.23	□□□□□ -1.73
VRK3-226	ENST00000602029	SELENOF	O60613	162 aa		4.23	□□□□□ -1.73
VRK3-226	ENST00000602029	APOC1	P02654	83 aa		4.23	□□□□□ -1.73
VRK3-226	ENST00000602029	ARG1	P05089	322 aa		4.23	□□□□□ -1.73
VRK3-226	ENST00000602029	LPL	P06858	475 aa		4.23	□□□□□ -1.73
VRK3-226	ENST00000602029	SNRPB	P14678	240 aa	Known RBP	4.23	□□□□□ -1.73
VRK3-226	ENST00000602029	IGLL1	P15814	213 aa		4.23	□□□□□ -1.73
VRK3-226	ENST00000602029	IGFBP3	P17936	291 aa	Predicted RBP	4.23	□□□□□ -1.73
VRK3-226	ENST00000602029	RCVRN	P35243	200 aa		4.23	□□□□□ -1.73
VRK3-226	ENST00000602029	HTR2B	P41595	481 aa		4.23	□□□□□ -1.73
VRK3-226	ENST00000602029	KIR2DS4	P43632	304 aa		4.23	□□□□□ -1.73
VRK3-226	ENST00000602029	VDAC2	P45880	294 aa	Predicted RBP	4.23	□□□□□ -1.73
VRK3-226	ENST00000602029	GPM6A	P51674	278 aa		4.23	□□□□□ -1.73
VRK3-226	ENST00000602029	TAS2R19	P59542	299 aa		4.23	□□□□□ -1.73
VRK3-226	ENST00000602029	NANOS3	P60323	173 aa	Known RBP	4.23	□□□□□ -1.73
VRK3-226	ENST00000602029	UBE2M	P61081	183 aa	Known RBP	4.23	□□□□□ -1.73
VRK3-226	ENST00000602029	RAB14	P61106	215 aa		4.23	□□□□□ -1.73
VRK3-226	ENST00000602029	HIST1H3A	P68431	136 aa		4.23	□□□□□ -1.73
VRK3-226	ENST00000602029	PRDX4	Q13162	271 aa		4.23	□□□□□ -1.73
VRK3-226	ENST00000602029	MEF2D	Q14814	521 aa		4.23	□□□□□ -1.73
VRK3-226	ENST00000602029	ARL6IP1	Q15041	203 aa		4.23	□□□□□ -1.73
VRK3-226	ENST00000602029	RAB11B	Q15907	218 aa		4.23	□□□□□ -1.73
VRK3-226	ENST00000602029	C9orf152	Q5JTZ5	239 aa		4.23	□□□□□ -1.73
VRK3-226	ENST00000602029	CLVS2	Q5SYC1	327 aa		4.23	□□□□□ -1.73
VRK3-226	ENST00000602029	FAM27D1	Q5T7N8	215 aa		4.23	□□□□□ -1.73
VRK3-226	ENST00000602029	HIST2H3PS2	Q5TEC6	136 aa		4.23	□□□□□ -1.73

Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms