RNA–Protein interactions for RNA: ENST00000589823.6

VMP1-210, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 580 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-210ENST00000589823 CNIH2Q6PI25 160 aa11.2□□□□□ -0.62
VMP1-210ENST00000589823 BAIAP2L2Q6UXY1 529 aa11.2□□□□□ -0.62
VMP1-210ENST00000589823 C1orf122Q6ZSJ8 110 aa11.2□□□□□ -0.62
VMP1-210ENST00000589823 C15orf40Q8WUR7 153 aa11.2□□□□□ -0.62
VMP1-210ENST00000589823 NUDCD2Q8WVJ2 157 aa11.2□□□□□ -0.62
VMP1-210ENST00000589823 PCGF1Q9BSM1 259 aa11.2□□□□□ -0.62
VMP1-210ENST00000589823 TMPRSS13Q9BYE2 586 aa11.2□□□□□ -0.62
VMP1-210ENST00000589823 METTL8Q9H825 291 aaKnown RBP11.2□□□□□ -0.62
VMP1-210ENST00000589823 MBNL3Q9NUK0 354 aaKnown RBP11.2□□□□□ -0.62
VMP1-210ENST00000589823 CALYQ9NYX4 217 aa11.2□□□□□ -0.62
VMP1-210ENST00000589823 OPN4Q9UHM6 478 aa11.2□□□□□ -0.62
VMP1-210ENST00000589823 ELF5Q9UKW6 265 aaPredicted RBP11.2□□□□□ -0.62
VMP1-210ENST00000589823 KBTBD11-OT1A0A1B0GTJ5 212 aa11.19□□□□□ -0.62
VMP1-210ENST00000589823 C17orf98A8MV24 154 aa11.19□□□□□ -0.62
VMP1-210ENST00000589823 SPINT2O43291 252 aa11.19□□□□□ -0.62
VMP1-210ENST00000589823 ORC5O43913 435 aa11.19□□□□□ -0.62
VMP1-210ENST00000589823 TPPPO94811 219 aa11.19□□□□□ -0.62
VMP1-210ENST00000589823 FCGR3AP08637 254 aa11.19□□□□□ -0.62
VMP1-210ENST00000589823 RCC1P18754 421 aaPredicted RBP11.19□□□□□ -0.62
VMP1-210ENST00000589823 DTYMKP23919 212 aa11.19□□□□□ -0.62
VMP1-210ENST00000589823 TNFSF8P32971 234 aa11.19□□□□□ -0.62
VMP1-210ENST00000589823 PRSS3P35030 304 aa11.19□□□□□ -0.62
VMP1-210ENST00000589823 ERVFRD-1P60508 538 aa11.19□□□□□ -0.62
VMP1-210ENST00000589823 MADCAM1Q13477 382 aa11.19□□□□□ -0.62
VMP1-210ENST00000589823 ZNF880Q6PDB4 577 aa11.19□□□□□ -0.62
VMP1-210ENST00000589823 VMO1Q7Z5L0 202 aa11.19□□□□□ -0.62
VMP1-210ENST00000589823 ZNF554Q86TJ5 538 aa11.19□□□□□ -0.62
VMP1-210ENST00000589823 SNX29P2Q8IUI4 249 aa11.19□□□□□ -0.62
VMP1-210ENST00000589823 PRR18Q8N4B5 295 aa11.19□□□□□ -0.62
VMP1-210ENST00000589823 ARL11Q969Q4 196 aa11.19□□□□□ -0.62
VMP1-210ENST00000589823 SIRPDQ9H106 197 aa11.19□□□□□ -0.62
VMP1-210ENST00000589823 RABL2AQ9UBK7 228 aaPredicted RBP11.19□□□□□ -0.62
VMP1-210ENST00000589823 RABL2BQ9UNT1 228 aa11.19□□□□□ -0.62
VMP1-210ENST00000589823 ARHGAP32A7KAX9 2087 aa11.19□□□□□ -0.62
VMP1-210ENST00000589823 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.19□□□□□ -0.621e-5■■■■□ 21.5
VMP1-210ENST00000589823 CELSR1Q9NYQ6 3014 aa11.19□□□□□ -0.62
VMP1-210ENST00000589823 MAST4O15021 2626 aa11.19□□□□□ -0.62
VMP1-210ENST00000589823 HLA-DQB1P01920 261 aa11.18□□□□□ -0.62
VMP1-210ENST00000589823 CGB3P0DN86 165 aa11.18□□□□□ -0.62
VMP1-210ENST00000589823 CGB7P0DN87 165 aa11.18□□□□□ -0.62
VMP1-210ENST00000589823 IGHV1-8P0DP01 117 aa11.18□□□□□ -0.62
VMP1-210ENST00000589823 MMP9P14780 707 aa11.18□□□□□ -0.62
VMP1-210ENST00000589823 HNF1AP20823 631 aa11.18□□□□□ -0.62
VMP1-210ENST00000589823 SSTR5P35346 364 aa11.18□□□□□ -0.62
VMP1-210ENST00000589823 CBX5P45973 191 aa11.18□□□□□ -0.62
VMP1-210ENST00000589823 DLX6P56179 175 aa11.18□□□□□ -0.62
VMP1-210ENST00000589823 IL18Q14116 193 aa11.18□□□□□ -0.62
VMP1-210ENST00000589823 C17orf58Q2M2W7 97 aa11.18□□□□□ -0.62
VMP1-210ENST00000589823 PRAMEF5Q5TYX0 476 aa11.18□□□□□ -0.62
VMP1-210ENST00000589823 HEPN1Q6WQI6 88 aa11.18□□□□□ -0.62
VMP1-210ENST00000589823 TEX29Q8N6K0 151 aa11.18□□□□□ -0.62
VMP1-210ENST00000589823 Q8N7P7 452 aa11.18□□□□□ -0.62
VMP1-210ENST00000589823 RFESDQ8TAC1 157 aa11.18□□□□□ -0.62
VMP1-210ENST00000589823 TAF9BQ9HBM6 251 aa11.18□□□□□ -0.62
VMP1-210ENST00000589823 Q9N2K0 584 aa11.18□□□□□ -0.62
VMP1-210ENST00000589823 SIRT7Q9NRC8 400 aa11.18□□□□□ -0.62
VMP1-210ENST00000589823 IDI2-AS1Q9NZ38 188 aa11.18□□□□□ -0.62
VMP1-210ENST00000589823 PTTG2Q9NZH5 202 aa11.18□□□□□ -0.62
VMP1-210ENST00000589823 ABCA1O95477 2261 aa11.18□□□□□ -0.62
VMP1-210ENST00000589823 ACANP16112 2415 aa11.17□□□□□ -0.62
VMP1-210ENST00000589823 FABP12A6NFH5 140 aa11.17□□□□□ -0.62
VMP1-210ENST00000589823 C12orf77C9JDV5 145 aa11.17□□□□□ -0.62
VMP1-210ENST00000589823 C15orf65H3BRN8 121 aa11.17□□□□□ -0.62
VMP1-210ENST00000589823 SSX5O60225 188 aa11.17□□□□□ -0.62
VMP1-210ENST00000589823 HBZP02008 142 aa11.17□□□□□ -0.62
VMP1-210ENST00000589823 PTHLHP12272 177 aa11.17□□□□□ -0.62
VMP1-210ENST00000589823 OMGP23515 440 aa11.17□□□□□ -0.62
VMP1-210ENST00000589823 PRTN3P24158 256 aa11.17□□□□□ -0.62
VMP1-210ENST00000589823 KIR2DS4P43632 304 aa11.17□□□□□ -0.62
VMP1-210ENST00000589823 HLA-DRB3P79483 266 aa11.17□□□□□ -0.62
VMP1-210ENST00000589823 KIR2DS1Q14954 304 aa11.17□□□□□ -0.62
VMP1-210ENST00000589823 HMGN3Q15651 99 aa11.17□□□□□ -0.62
VMP1-210ENST00000589823 SRSF7Q16629 238 aaKnown RBP eCLIP11.17□□□□□ -0.62
VMP1-210ENST00000589823 LTC4SQ16873 150 aa11.17□□□□□ -0.62
VMP1-210ENST00000589823 TMEM30BQ3MIR4 351 aa11.17□□□□□ -0.62
VMP1-210ENST00000589823 NCR3LG1Q68D85 454 aa11.17□□□□□ -0.62
VMP1-210ENST00000589823 OR52W1Q6IF63 320 aa11.17□□□□□ -0.62
VMP1-210ENST00000589823 PYHIN1Q6K0P9 492 aa11.17□□□□□ -0.62
VMP1-210ENST00000589823 FAM131AQ6UXB0 335 aa11.17□□□□□ -0.62
VMP1-210ENST00000589823 ZNF782Q6ZMW2 699 aaPredicted RBP11.17□□□□□ -0.62
VMP1-210ENST00000589823 C11orf42Q8N5U0 333 aa11.17□□□□□ -0.62
VMP1-210ENST00000589823 OR10A7Q8NGE5 316 aa11.17□□□□□ -0.62
VMP1-210ENST00000589823 OR6Q1Q8NGQ2 317 aa11.17□□□□□ -0.62
VMP1-210ENST00000589823 UBALD1Q8TB05 177 aa11.17□□□□□ -0.62
VMP1-210ENST00000589823 UPRTQ96BW1 309 aa11.17□□□□□ -0.62
VMP1-210ENST00000589823 GALMQ96C23 342 aa11.17□□□□□ -0.62
VMP1-210ENST00000589823 TBX15Q96SF7 602 aa11.17□□□□□ -0.62
VMP1-210ENST00000589823 ST6GALNAC5Q9BVH7 336 aa11.17□□□□□ -0.62
VMP1-210ENST00000589823 GSX1Q9H4S2 264 aaPredicted RBP11.17□□□□□ -0.62
VMP1-210ENST00000589823 HEXA-AS1Q9H8Q6 139 aa11.17□□□□□ -0.62
VMP1-210ENST00000589823 LINC00574Q9H8X3 128 aa11.17□□□□□ -0.62
VMP1-210ENST00000589823 UNKLQ9H9P5 680 aaKnown RBP11.17□□□□□ -0.62
VMP1-210ENST00000589823 SCPEP1Q9HB40 452 aa11.17□□□□□ -0.62
VMP1-210ENST00000589823 ZNF286AQ9HBT8 521 aa11.17□□□□□ -0.62
VMP1-210ENST00000589823 IFT46Q9NQC8 304 aa11.17□□□□□ -0.62
VMP1-210ENST00000589823 TMEM160Q9NX00 188 aa11.17□□□□□ -0.62
VMP1-210ENST00000589823 ZNF230Q9UIE0 474 aaPredicted RBP11.17□□□□□ -0.62
VMP1-210ENST00000589823 SESN1Q9Y6P5 492 aa11.17□□□□□ -0.62
VMP1-210ENST00000589823 TRDCB7Z8K6 153 aa11.16□□□□□ -0.62
VMP1-210ENST00000589823 NPIPB11E5RHQ5 1161 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms