RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 SUMF2Q8NBJ7 301 aa9.32□□□□□ -0.92
LIG3-209ENST00000586435 TMEM104Q8NE00 496 aa9.32□□□□□ -0.92
LIG3-209ENST00000586435 OR51A2Q8NGJ7 313 aa9.32□□□□□ -0.92
LIG3-209ENST00000586435 OR5M8Q8NGP6 311 aa9.32□□□□□ -0.92
LIG3-209ENST00000586435 OR2T10Q8NGZ9 312 aa9.32□□□□□ -0.92
LIG3-209ENST00000586435 ST6GALNAC6Q969X2 333 aa9.32□□□□□ -0.92
LIG3-209ENST00000586435 GPER1Q99527 375 aa9.32□□□□□ -0.92
LIG3-209ENST00000586435 PDCD1LG2Q9BQ51 273 aa9.32□□□□□ -0.92
LIG3-209ENST00000586435 JAM3Q9BX67 310 aa9.32□□□□□ -0.92
LIG3-209ENST00000586435 DCLRE1BQ9H816 532 aa9.32□□□□□ -0.92
LIG3-209ENST00000586435 ISG20L2Q9H9L3 353 aaKnown RBP9.32□□□□□ -0.92
LIG3-209ENST00000586435 FAM118AQ9NWS6 357 aa9.32□□□□□ -0.92
LIG3-209ENST00000586435 ERVK13-1Q9NX77 482 aa9.32□□□□□ -0.92
LIG3-209ENST00000586435 ST3GAL6Q9Y274 331 aa9.32□□□□□ -0.92
LIG3-209ENST00000586435 SIRT4Q9Y6E7 314 aaPredicted RBP9.32□□□□□ -0.92
LIG3-209ENST00000586435 U3KQK5 164 aa9.32□□□□□ -0.92
LIG3-209ENST00000586435 STAB2Q8WWQ8 2551 aa9.32□□□□□ -0.92
LIG3-209ENST00000586435 A0A1W2PPE3 182 aa9.31□□□□□ -0.92
LIG3-209ENST00000586435 TMEM30CPA0ZSE6 113 aa9.31□□□□□ -0.92
LIG3-209ENST00000586435 LINC01548A6NM66 108 aa9.31□□□□□ -0.92
LIG3-209ENST00000586435 NCBP2LA6PVI3 153 aaKnown RBP9.31□□□□□ -0.92
LIG3-209ENST00000586435 E9PI62 339 aa9.31□□□□□ -0.92
LIG3-209ENST00000586435 C15orf65H3BRN8 121 aa9.31□□□□□ -0.92
LIG3-209ENST00000586435 RRP9O43818 475 aaKnown RBP9.31□□□□□ -0.92
LIG3-209ENST00000586435 ORC5O43913 435 aa9.31□□□□□ -0.92
LIG3-209ENST00000586435 RPLP1P05386 114 aaKnown RBP9.31□□□□□ -0.92
LIG3-209ENST00000586435 CD2P06729 351 aa9.31□□□□□ -0.92
LIG3-209ENST00000586435 CD1BP29016 333 aa9.31□□□□□ -0.92
LIG3-209ENST00000586435 ALDH3A2P51648 485 aa9.31□□□□□ -0.92
LIG3-209ENST00000586435 ZNF137PP52743 207 aa9.31□□□□□ -0.92
LIG3-209ENST00000586435 GBX2P52951 348 aaPredicted RBP9.31□□□□□ -0.92
LIG3-209ENST00000586435 RBM11P57052 281 aaKnown RBP9.31□□□□□ -0.92
LIG3-209ENST00000586435 CFHR3Q02985 330 aa9.31□□□□□ -0.92
LIG3-209ENST00000586435 RAB40BQ12829 278 aa9.31□□□□□ -0.92
LIG3-209ENST00000586435 GPR50Q13585 617 aa9.31□□□□□ -0.92
LIG3-209ENST00000586435 FHL3Q13643 280 aa9.31□□□□□ -0.92
LIG3-209ENST00000586435 MOB3BQ86TA1 216 aa9.31□□□□□ -0.92
LIG3-209ENST00000586435 OR8H1Q8NGG4 311 aa9.31□□□□□ -0.92
LIG3-209ENST00000586435 OR10K1Q8NGX5 313 aa9.31□□□□□ -0.92
LIG3-209ENST00000586435 TFAP2CQ92754 450 aa9.31□□□□□ -0.92
LIG3-209ENST00000586435 DUX3Q96PT4 197 aa9.31□□□□□ -0.92
LIG3-209ENST00000586435 FAM192AQ9GZU8 254 aa9.31□□□□□ -0.92
LIG3-209ENST00000586435 GFOD1Q9NXC2 390 aa9.31□□□□□ -0.92
LIG3-209ENST00000586435 IGHV3-72A0A0B4J1Y9 119 aa9.3□□□□□ -0.92
LIG3-209ENST00000586435 TRAV39A0A0B4J263 110 aa9.3□□□□□ -0.92
LIG3-209ENST00000586435 SDCBPO00560 298 aaPredicted RBP9.3□□□□□ -0.92
LIG3-209ENST00000586435 TXNL1O43396 289 aa9.3□□□□□ -0.92
LIG3-209ENST00000586435 OR7C1O76099 320 aaPredicted RBP9.3□□□□□ -0.92
LIG3-209ENST00000586435 HTR3BO95264 441 aa9.3□□□□□ -0.92
LIG3-209ENST00000586435 MOSP00540 346 aa9.3□□□□□ -0.92
LIG3-209ENST00000586435 IGHG4P01861 327 aa9.3□□□□□ -0.92
LIG3-209ENST00000586435 IL3RAP26951 378 aa9.3□□□□□ -0.92
LIG3-209ENST00000586435 REG1BP48304 166 aa9.3□□□□□ -0.92
LIG3-209ENST00000586435 LUMP51884 338 aaPredicted RBP9.3□□□□□ -0.92
LIG3-209ENST00000586435 RAB25P57735 213 aa9.3□□□□□ -0.92
LIG3-209ENST00000586435 MPV17LQ2QL34 196 aa9.3□□□□□ -0.92
LIG3-209ENST00000586435 DEFB136Q30KP8 78 aa9.3□□□□□ -0.92
LIG3-209ENST00000586435 TMEM30BQ3MIR4 351 aa9.3□□□□□ -0.92
LIG3-209ENST00000586435 NKAPLQ5M9Q1 402 aa9.3□□□□□ -0.92
LIG3-209ENST00000586435 SATL1Q86VE3 508 aa9.3□□□□□ -0.92
LIG3-209ENST00000586435 FAM71E2Q8N5Q1 922 aa9.3□□□□□ -0.92
LIG3-209ENST00000586435 OR52N1Q8NH53 320 aa9.3□□□□□ -0.92
LIG3-209ENST00000586435 C4orf3Q8WVX3 66 aa9.3□□□□□ -0.92
LIG3-209ENST00000586435 RTN4IP1Q8WWV3 396 aaPredicted RBP9.3□□□□□ -0.92
LIG3-209ENST00000586435 RGP1Q92546 391 aaPredicted RBP9.3□□□□□ -0.92
LIG3-209ENST00000586435 ARL11Q969Q4 196 aa9.3□□□□□ -0.92
LIG3-209ENST00000586435 Q96MT0 163 aa9.3□□□□□ -0.92
LIG3-209ENST00000586435 S1PR3Q99500 378 aa9.3□□□□□ -0.92
LIG3-209ENST00000586435 METTL9Q9H1A3 318 aa9.3□□□□□ -0.92
LIG3-209ENST00000586435 PLSCR3Q9NRY6 295 aa9.3□□□□□ -0.92
LIG3-209ENST00000586435 MRPS18AQ9NVS2 196 aaKnown RBP9.3□□□□□ -0.92
LIG3-209ENST00000586435 PAK1IP1Q9NWT1 392 aaPredicted RBP9.3□□□□□ -0.92
LIG3-209ENST00000586435 TAS2R4Q9NYW5 299 aa9.3□□□□□ -0.92
LIG3-209ENST00000586435 ZNF581Q9P0T4 197 aa9.3□□□□□ -0.92
LIG3-209ENST00000586435 GMPPBQ9Y5P6 360 aa9.3□□□□□ -0.92
LIG3-209ENST00000586435 GEMIN2O14893 280 aaKnown RBP9.29□□□□□ -0.92
LIG3-209ENST00000586435 ZNF780AO75290 641 aaPredicted RBP9.29□□□□□ -0.92
LIG3-209ENST00000586435 CIB2O75838 187 aa9.29□□□□□ -0.92
LIG3-209ENST00000586435 CDRT1O95170 752 aa9.29□□□□□ -0.92
LIG3-209ENST00000586435 CSTBP04080 98 aaKnown RBP9.29□□□□□ -0.92
LIG3-209ENST00000586435 IGF1P05019 195 aa9.29□□□□□ -0.92
LIG3-209ENST00000586435 OR5H8P0DN80 308 aa9.29□□□□□ -0.92
LIG3-209ENST00000586435 PSMB8P28062 276 aa9.29□□□□□ -0.92
LIG3-209ENST00000586435 ZIK1Q3SY52 487 aaPredicted RBP9.29□□□□□ -0.92
LIG3-209ENST00000586435 CCDC58Q4VC31 144 aa9.29□□□□□ -0.92
LIG3-209ENST00000586435 LCNL1Q6ZST4 164 aa9.29□□□□□ -0.92
LIG3-209ENST00000586435 SLC25A48Q6ZT89 311 aaKnown RBP9.29□□□□□ -0.92
LIG3-209ENST00000586435 RHOXF1Q8NHV9 184 aa9.29□□□□□ -0.92
LIG3-209ENST00000586435 MYOZ3Q8TDC0 251 aa9.29□□□□□ -0.92
LIG3-209ENST00000586435 GPR148Q8TDV2 347 aa9.29□□□□□ -0.92
LIG3-209ENST00000586435 PYDC1Q8WXC3 89 aa9.29□□□□□ -0.92
LIG3-209ENST00000586435 TMEM106AQ96A25 262 aa9.29□□□□□ -0.92
LIG3-209ENST00000586435 RASL11BQ9BPW5 248 aa9.29□□□□□ -0.92
LIG3-209ENST00000586435 CHCHD6Q9BRQ6 235 aa9.29□□□□□ -0.92
LIG3-209ENST00000586435 TMEM138Q9NPI0 162 aa9.29□□□□□ -0.92
LIG3-209ENST00000586435 AASSQ9UDR5 926 aa9.29□□□□□ -0.92
LIG3-209ENST00000586435 SEC14L6B5MCN3 397 aa9.28□□□□□ -0.92
LIG3-209ENST00000586435 C3orf84H3BNL1 204 aa9.28□□□□□ -0.92
LIG3-209ENST00000586435 LIMS3P0CW19 117 aa9.28□□□□□ -0.92
LIG3-209ENST00000586435 LIMS4P0CW20 117 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms