RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 LYL1P12980 280 aa11.95□□□□□ -0.5
LIG3-205ENST00000585941 NUP62P37198 522 aaPredicted RBP11.95□□□□□ -0.5
LIG3-205ENST00000585941 CA7P43166 264 aa11.95□□□□□ -0.5
LIG3-205ENST00000585941 RAB14P61106 215 aa11.95□□□□□ -0.5
LIG3-205ENST00000585941 IL15RAQ13261 267 aa11.95□□□□□ -0.5
LIG3-205ENST00000585941 EXOSC2Q13868 293 aaKnown RBP11.95□□□□□ -0.5
LIG3-205ENST00000585941 ATXN7L3Q14CW9 347 aaPredicted RBP11.95□□□□□ -0.5
LIG3-205ENST00000585941 PRSS54Q6PEW0 395 aa11.95□□□□□ -0.5
LIG3-205ENST00000585941 WFDC8Q8IUA0 241 aa11.95□□□□□ -0.5
LIG3-205ENST00000585941 ERGIC1Q969X5 290 aa11.95□□□□□ -0.5
LIG3-205ENST00000585941 OR10C1Q96KK4 312 aa11.95□□□□□ -0.5
LIG3-205ENST00000585941 OR2V2Q96R30 315 aa11.95□□□□□ -0.5
LIG3-205ENST00000585941 DIRC2Q96SL1 478 aa11.95□□□□□ -0.5
LIG3-205ENST00000585941 ZFP57Q9NU63 452 aa11.95□□□□□ -0.5
LIG3-205ENST00000585941 PRR13Q9NZ81 148 aa11.95□□□□□ -0.5
LIG3-205ENST00000585941 MBD2Q9UBB5 411 aa11.95□□□□□ -0.5
LIG3-205ENST00000585941 IL19Q9UHD0 177 aa11.95□□□□□ -0.5
LIG3-205ENST00000585941 TRGV8A0A0C4DH27 118 aa11.94□□□□□ -0.5
LIG3-205ENST00000585941 ASCL1P50553 236 aa11.94□□□□□ -0.5
LIG3-205ENST00000585941 IAH1Q2TAA2 248 aaPredicted RBP11.94□□□□□ -0.5
LIG3-205ENST00000585941 GGNBP1Q5YKI7 109 aa11.94□□□□□ -0.5
LIG3-205ENST00000585941 TRAT1Q6PIZ9 186 aa11.94□□□□□ -0.5
LIG3-205ENST00000585941 C22orf34Q6ZV56 151 aa11.94□□□□□ -0.5
LIG3-205ENST00000585941 PPP1R35Q8TAP8 253 aa11.94□□□□□ -0.5
LIG3-205ENST00000585941 GLYATL2Q8WU03 294 aa11.94□□□□□ -0.5
LIG3-205ENST00000585941 MRPL37Q9BZE1 423 aaKnown RBP11.94□□□□□ -0.5
LIG3-205ENST00000585941 DNAJB11Q9UBS4 358 aa11.94□□□□□ -0.5
LIG3-205ENST00000585941 TMED3Q9Y3Q3 217 aa11.94□□□□□ -0.5
LIG3-205ENST00000585941 LAMA5O15230 3695 aa11.94□□□□□ -0.5
LIG3-205ENST00000585941 DUXBA0A1W2PPF3 345 aa11.94□□□□□ -0.5
LIG3-205ENST00000585941 OOEPA6NGQ2 149 aa11.94□□□□□ -0.5
LIG3-205ENST00000585941 PHF1O43189 567 aaPredicted RBP11.94□□□□□ -0.5
LIG3-205ENST00000585941 PSPNO60542 156 aa11.94□□□□□ -0.5
LIG3-205ENST00000585941 WNT2P09544 360 aa11.94□□□□□ -0.5
LIG3-205ENST00000585941 UBA52P62987 128 aaKnown RBP11.94□□□□□ -0.5
LIG3-205ENST00000585941 C6orf183Q5T699 404 aa11.94□□□□□ -0.5
LIG3-205ENST00000585941 OR8H3Q8N146 312 aa11.94□□□□□ -0.5
LIG3-205ENST00000585941 DCUN1D4Q92564 292 aa11.94□□□□□ -0.5
LIG3-205ENST00000585941 MSI2Q96DH6 328 aaKnown RBP11.94□□□□□ -0.5
LIG3-205ENST00000585941 AKR1E2Q96JD6 320 aa11.94□□□□□ -0.5
LIG3-205ENST00000585941 C18orf12Q96KH6 178 aa11.94□□□□□ -0.5
LIG3-205ENST00000585941 TMEM222Q9H0R3 208 aa11.94□□□□□ -0.5
LIG3-205ENST00000585941 TAF9BQ9HBM6 251 aa11.94□□□□□ -0.5
LIG3-205ENST00000585941 PLCE1Q9P212 2302 aa11.93□□□□□ -0.5
LIG3-205ENST00000585941 IGKV1D-13A0A0B4J2D9 117 aa11.93□□□□□ -0.5
LIG3-205ENST00000585941 RNF222A6NCQ9 220 aa11.93□□□□□ -0.5
LIG3-205ENST00000585941 C3orf80F5H4A9 247 aa11.93□□□□□ -0.5
LIG3-205ENST00000585941 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.93□□□□□ -0.5
LIG3-205ENST00000585941 ABCD4O14678 606 aa11.93□□□□□ -0.5
LIG3-205ENST00000585941 HSPA12AO43301 675 aa11.93□□□□□ -0.5
LIG3-205ENST00000585941 BCL2L11O43521 198 aa11.93□□□□□ -0.5
LIG3-205ENST00000585941 SPRY3O43610 288 aa11.93□□□□□ -0.5
LIG3-205ENST00000585941 RLN2P04090 185 aa11.93□□□□□ -0.5
LIG3-205ENST00000585941 THBDP07204 575 aa11.93□□□□□ -0.5
LIG3-205ENST00000585941 IGKV1-13P0DP09 117 aa11.93□□□□□ -0.5
LIG3-205ENST00000585941 PRDX2P32119 198 aa11.93□□□□□ -0.5
LIG3-205ENST00000585941 PLA2G5P39877 138 aa11.93□□□□□ -0.5
LIG3-205ENST00000585941 OR3A1P47881 315 aa11.93□□□□□ -0.5
LIG3-205ENST00000585941 LUMP51884 338 aaPredicted RBP11.93□□□□□ -0.5
LIG3-205ENST00000585941 AP2S1P53680 142 aaPredicted RBP11.93□□□□□ -0.5
LIG3-205ENST00000585941 COL10A1Q03692 680 aa11.93□□□□□ -0.5
LIG3-205ENST00000585941 CLLU1Q5K131 121 aa11.93□□□□□ -0.5
LIG3-205ENST00000585941 ZNF818PQ6ZRF7 136 aa11.93□□□□□ -0.5
LIG3-205ENST00000585941 TBC1D26Q86UD7 250 aa11.93□□□□□ -0.5
LIG3-205ENST00000585941 BVESQ8NE79 360 aa11.93□□□□□ -0.5
LIG3-205ENST00000585941 OR10V1Q8NGI7 309 aa11.93□□□□□ -0.5
LIG3-205ENST00000585941 OR11L1Q8NGX0 322 aa11.93□□□□□ -0.5
LIG3-205ENST00000585941 IL1F10Q8WWZ1 152 aa11.93□□□□□ -0.5
LIG3-205ENST00000585941 FAM122AQ96E09 287 aa11.93□□□□□ -0.5
LIG3-205ENST00000585941 LURAP1Q96LR2 239 aa11.93□□□□□ -0.5
LIG3-205ENST00000585941 RNF126Q9BV68 326 aa11.93□□□□□ -0.5
LIG3-205ENST00000585941 GSKIPQ9P0R6 139 aa11.93□□□□□ -0.5
LIG3-205ENST00000585941 UBE2J1Q9Y385 318 aaPredicted RBP11.93□□□□□ -0.5
LIG3-205ENST00000585941 PCNX1Q96RV3 2341 aa11.93□□□□□ -0.5
LIG3-205ENST00000585941 SPTA1P02549 2419 aa11.92□□□□□ -0.5
LIG3-205ENST00000585941 DPRXA6NFQ7 191 aa11.92□□□□□ -0.5
LIG3-205ENST00000585941 MPTX1A8MV57 137 aa11.92□□□□□ -0.5
LIG3-205ENST00000585941 HEXAP06865 529 aa11.92□□□□□ -0.5
LIG3-205ENST00000585941 ADH4P08319 380 aa11.92□□□□□ -0.5
LIG3-205ENST00000585941 ID4P47928 161 aa11.92□□□□□ -0.5
LIG3-205ENST00000585941 CEBPDP49716 269 aaPredicted RBP11.92□□□□□ -0.5
LIG3-205ENST00000585941 TNFAIP6P98066 277 aaPredicted RBP11.92□□□□□ -0.5
LIG3-205ENST00000585941 SMCO1Q147U7 214 aa11.92□□□□□ -0.5
LIG3-205ENST00000585941 SP6Q3SY56 376 aa11.92□□□□□ -0.5
LIG3-205ENST00000585941 FBXL19-AS1Q494R0 122 aa11.92□□□□□ -0.5
LIG3-205ENST00000585941 MOGAT3Q86VF5 341 aa11.92□□□□□ -0.5
LIG3-205ENST00000585941 ITLN1Q8WWA0 313 aa11.92□□□□□ -0.5
LIG3-205ENST00000585941 IL22RA2Q969J5 263 aa11.92□□□□□ -0.5
LIG3-205ENST00000585941 GALMQ96C23 342 aa11.92□□□□□ -0.5
LIG3-205ENST00000585941 TMEM56Q96MV1 263 aa11.92□□□□□ -0.5
LIG3-205ENST00000585941 GSX2Q9BZM3 304 aa11.92□□□□□ -0.5
LIG3-205ENST00000585941 DNTTIP1Q9H147 329 aa11.92□□□□□ -0.5
LIG3-205ENST00000585941 CCL28Q9NRJ3 127 aa11.92□□□□□ -0.5
LIG3-205ENST00000585941 ERRFI1Q9UJM3 462 aaPredicted RBP11.92□□□□□ -0.5
LIG3-205ENST00000585941 TMEM56-RWDD3S4R434 201 aa11.92□□□□□ -0.5
LIG3-205ENST00000585941 POLEQ07864 2286 aa11.92□□□□□ -0.5
LIG3-205ENST00000585941 SPENQ96T58 3664 aaKnown RBP11.92□□□□□ -0.5
LIG3-205ENST00000585941 H0Y980 276 aa11.91□□□□□ -0.5
LIG3-205ENST00000585941 CFDP00746 253 aaPredicted RBP11.91□□□□□ -0.5
LIG3-205ENST00000585941 LHBP01229 141 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms