RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	SSX7	Q7RTT5	188 aa		3.78	□□□□□ -1.8
SS18-223	ENST00000583595	C17orf82	Q86X59	251 aa	Predicted RBP	3.78	□□□□□ -1.8
SS18-223	ENST00000583595	C6orf223	Q8N319	242 aa		3.78	□□□□□ -1.8
SS18-223	ENST00000583595	KCNRG	Q8N5I3	272 aa		3.78	□□□□□ -1.8
SS18-223	ENST00000583595	TMEM161B	Q8NDZ6	487 aa		3.78	□□□□□ -1.8
SS18-223	ENST00000583595	OR10AD1	Q8NGE0	317 aa		3.78	□□□□□ -1.8
SS18-223	ENST00000583595	OR4D6	Q8NGJ1	314 aa		3.78	□□□□□ -1.8
SS18-223	ENST00000583595	OR13C8	Q8NGS7	320 aa		3.78	□□□□□ -1.8
SS18-223	ENST00000583595	OR52P1P	Q8NH57	321 aa		3.78	□□□□□ -1.8
SS18-223	ENST00000583595	PIGX	Q8TBF5	258 aa		3.78	□□□□□ -1.8
SS18-223	ENST00000583595	RNASEH2C	Q8TDP1	164 aa	Known RBP	3.78	□□□□□ -1.8
SS18-223	ENST00000583595	CHCHD10	Q8WYQ3	142 aa	Predicted RBP	3.78	□□□□□ -1.8
SS18-223	ENST00000583595	CMBL	Q96DG6	245 aa		3.78	□□□□□ -1.8
SS18-223	ENST00000583595	SMIM8	Q96KF7	97 aa		3.78	□□□□□ -1.8
SS18-223	ENST00000583595	OR2M4	Q96R27	311 aa		3.78	□□□□□ -1.8
SS18-223	ENST00000583595	ZNF382	Q96SR6	550 aa		3.78	□□□□□ -1.8
SS18-223	ENST00000583595	FXYD6	Q9H0Q3	95 aa		3.78	□□□□□ -1.8
SS18-223	ENST00000583595	SYT4	Q9H2B2	425 aa		3.78	□□□□□ -1.8
SS18-223	ENST00000583595	KIR3DX1	Q9H7L2	352 aa		3.78	□□□□□ -1.8
SS18-223	ENST00000583595	TMEM27	Q9HBJ8	222 aa		3.78	□□□□□ -1.8
SS18-223	ENST00000583595	UBQLN4	Q9NRR5	601 aa		3.78	□□□□□ -1.8
SS18-223	ENST00000583595	TAS2R5	Q9NYW4	299 aa		3.78	□□□□□ -1.8
SS18-223	ENST00000583595	PCYT1B	Q9Y5K3	369 aa	Predicted RBP	3.78	□□□□□ -1.8
SS18-223	ENST00000583595	DNAJC15	Q9Y5T4	150 aa		3.78	□□□□□ -1.8
SS18-223	ENST00000583595		V9GY05	133 aa		3.78	□□□□□ -1.8
SS18-223	ENST00000583595	PHF3	Q92576	2039 aa	Known RBP	3.78	□□□□□ -1.8
SS18-223	ENST00000583595	WDR90	Q96KV7	1748 aa		3.78	□□□□□ -1.8
SS18-223	ENST00000583595	CHD5	Q8TDI0	1954 aa		3.78	□□□□□ -1.8
SS18-223	ENST00000583595	SMIM28	A0A1B0GU29	152 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	RBMY1B	A6NDE4	496 aa	Known RBP	3.77	□□□□□ -1.81
SS18-223	ENST00000583595	RBMY1E	A6NEQ0	496 aa	Known RBP	3.77	□□□□□ -1.81
SS18-223	ENST00000583595	ZNF726	A6NNF4	738 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	EPM2A	B3EWF7	344 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595		C9J4A7	227 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	LRRN3	E7EW58	273 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595		K7N7A8	449 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	RFXANK	O14593	260 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	PHOX2A	O14813	284 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	MAGEB4	O15481	346 aa	Predicted RBP	3.77	□□□□□ -1.81
SS18-223	ENST00000583595	ZNF253	O75346	499 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	ENTPD6	O75354	484 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	REM1	O75628	298 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	ETHE1	O95571	254 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	RAB36	O95755	333 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	SOD1	P00441	154 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	OXT	P01178	125 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	GCG	P01275	180 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	CTXN2	P0C2S0	81 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	OR5AC1	P0C628	307 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	RBMY1D	P0C7P1	496 aa	Known RBP	3.77	□□□□□ -1.81
SS18-223	ENST00000583595	RBMY1A1	P0DJD3	496 aa	Known RBP	3.77	□□□□□ -1.81
SS18-223	ENST00000583595	ELK1	P19419	428 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	PSMB1	P20618	241 aa	Known RBP	3.77	□□□□□ -1.81
SS18-223	ENST00000583595	PSMB6	P28072	239 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	SHC1	P29353	583 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	AQP1	P29972	269 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	TNFSF9	P41273	254 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	IDH2	P48735	452 aa	Known RBP	3.77	□□□□□ -1.81
SS18-223	ENST00000583595	NOV	P48745	357 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	CDC34	P49427	236 aa	Predicted RBP	3.77	□□□□□ -1.81
SS18-223	ENST00000583595	TAF6	P49848	677 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	GZMM	P51124	257 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	SSR4	P51571	173 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	DIO3	P55073	304 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	TPI1	P60174	286 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	ACTB	P60709	375 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	ARF6	P62330	175 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	ACTG1	P63261	375 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	TGFBR3	Q03167	851 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	MADCAM1	Q13477	382 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	CLINT1	Q14677	625 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	RHEB	Q15382	184 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	GOLGA7B	Q2TAP0	167 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	TMEM30B	Q3MIR4	351 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	TTLL9	Q3SXZ7	439 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	CD300LG	Q6UXG3	332 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	DNM1P46	Q6ZS02	220 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	MYPOP	Q86VE0	399 aa	Predicted RBP	3.77	□□□□□ -1.81
SS18-223	ENST00000583595	SELENOH	Q8IZQ5	122 aa	Known RBP	3.77	□□□□□ -1.81
SS18-223	ENST00000583595	HIST3H2BB	Q8N257	126 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	GPD1L	Q8N335	351 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	ZNF664	Q8N3J9	261 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	CSNK1G2-AS1	Q8NCQ2	148 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	OR10R2	Q8NGX6	335 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	OR5K2	Q8NHB8	316 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	JOSD2	Q8TAC2	188 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	NUBPL	Q8TB37	319 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	OR8D1	Q8WZ84	308 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	NDRG1	Q92597	394 aa	Known RBP	3.77	□□□□□ -1.81
SS18-223	ENST00000583595	DYNLL2	Q96FJ2	89 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	GALNT14	Q96FL9	552 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	PCBD2	Q9H0N5	130 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	PLEKHA1	Q9HB21	404 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	CSNK1G1	Q9HCP0	422 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	RPS10P5	Q9NQ39	176 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	TMEM100	Q9NV29	134 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	KCNIP1	Q9NZI2	227 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	DOK5	Q9P104	306 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	OPN4	Q9UHM6	478 aa		3.77	□□□□□ -1.81
SS18-223	ENST00000583595	DKKL1	Q9UK85	242 aa		3.77	□□□□□ -1.81

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