RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 TSPAN31Q12999 210 aa11.93□□□□□ -0.5
VPS53-218ENST00000575207 C5orf64Q2M2E5 130 aa11.93□□□□□ -0.5
VPS53-218ENST00000575207 PVRIGQ6DKI7 326 aa11.93□□□□□ -0.5
VPS53-218ENST00000575207 KIR2DL5AQ8N109 375 aa11.93□□□□□ -0.5
VPS53-218ENST00000575207 KIR2DL5BQ8NHK3 375 aa11.93□□□□□ -0.5
VPS53-218ENST00000575207 DYNLRB2Q8TF09 96 aa11.93□□□□□ -0.5
VPS53-218ENST00000575207 HMG20AQ9NP66 347 aa11.93□□□□□ -0.5
VPS53-218ENST00000575207 TAS2R1Q9NYW7 299 aa11.93□□□□□ -0.5
VPS53-218ENST00000575207 NUFIP1Q9UHK0 495 aaKnown RBP11.93□□□□□ -0.5
VPS53-218ENST00000575207 RNF150Q9ULK6 438 aa11.93□□□□□ -0.5
VPS53-218ENST00000575207 DIRAS1O95057 198 aa11.92□□□□□ -0.5
VPS53-218ENST00000575207 CYB5AP00167 134 aa11.92□□□□□ -0.5
VPS53-218ENST00000575207 SSTR5P35346 364 aa11.92□□□□□ -0.5
VPS53-218ENST00000575207 NUDT2P50583 147 aa11.92□□□□□ -0.5
VPS53-218ENST00000575207 FUT6P51993 359 aa11.92□□□□□ -0.5
VPS53-218ENST00000575207 ACTBP60709 375 aa11.92□□□□□ -0.5
VPS53-218ENST00000575207 AKIRIN2Q53H80 203 aa11.92□□□□□ -0.5
VPS53-218ENST00000575207 STPG3Q8N7X2 389 aa11.92□□□□□ -0.5
VPS53-218ENST00000575207 OR14K1Q8NGZ2 314 aa11.92□□□□□ -0.5
VPS53-218ENST00000575207 UBALD1Q8TB05 177 aa11.92□□□□□ -0.5
VPS53-218ENST00000575207 ZNF251Q9BRH9 671 aa11.92□□□□□ -0.5
VPS53-218ENST00000575207 KIF25Q9UIL4 384 aa11.92□□□□□ -0.5
VPS53-218ENST00000575207 DHRS7CA6NNS2 312 aa11.91□□□□□ -0.5
VPS53-218ENST00000575207 SLC33A1O00400 549 aaPredicted RBP11.91□□□□□ -0.5
VPS53-218ENST00000575207 NBR2O15453 112 aa11.91□□□□□ -0.5
VPS53-218ENST00000575207 SELENOFO60613 162 aa11.91□□□□□ -0.5
VPS53-218ENST00000575207 TTRP02766 147 aa11.91□□□□□ -0.5
VPS53-218ENST00000575207 IFNGR2P38484 337 aa11.91□□□□□ -0.5
VPS53-218ENST00000575207 RPEL1Q2QD12 228 aa11.91□□□□□ -0.5
VPS53-218ENST00000575207 C8orf31Q8N9H6 132 aa11.91□□□□□ -0.5
VPS53-218ENST00000575207 CHST4Q8NCG5 386 aa11.91□□□□□ -0.5
VPS53-218ENST00000575207 OR8D4Q8NGM9 314 aa11.91□□□□□ -0.5
VPS53-218ENST00000575207 GNPDA2Q8TDQ7 276 aa11.91□□□□□ -0.5
VPS53-218ENST00000575207 ABHD5Q8WTS1 349 aa11.91□□□□□ -0.5
VPS53-218ENST00000575207 BORCS8Q96FH0 119 aa11.91□□□□□ -0.5
VPS53-218ENST00000575207 COMMD4Q9H0A8 199 aa11.91□□□□□ -0.5
VPS53-218ENST00000575207 NCOR1P1Q9H4R4 102 aa11.91□□□□□ -0.5
VPS53-218ENST00000575207 MED20Q9H944 212 aa11.91□□□□□ -0.5
VPS53-218ENST00000575207 ZNF355PQ9NSJ1 428 aa11.91□□□□□ -0.5
VPS53-218ENST00000575207 PEF1Q9UBV8 284 aaKnown RBP11.91□□□□□ -0.5
VPS53-218ENST00000575207 AGRNO00468 2067 aa11.91□□□□□ -0.5
VPS53-218ENST00000575207 A0A0G2JLM5 398 aa11.9□□□□□ -0.5
VPS53-218ENST00000575207 E2F6O75461 281 aa11.9□□□□□ -0.5
VPS53-218ENST00000575207 CX3CL1P78423 397 aa11.9□□□□□ -0.5
VPS53-218ENST00000575207 UBE2V2Q15819 145 aa11.9□□□□□ -0.5
VPS53-218ENST00000575207 UNQ5815/PRO19632Q6UWF5 114 aa11.9□□□□□ -0.5
VPS53-218ENST00000575207 Q6ZRM9 215 aa11.9□□□□□ -0.5
VPS53-218ENST00000575207 OR51T1Q8NGJ9 327 aa11.9□□□□□ -0.5
VPS53-218ENST00000575207 MRGPRDQ8TDS7 321 aa11.9□□□□□ -0.5
VPS53-218ENST00000575207 RITA1Q96K30 269 aa11.9□□□□□ -0.5
VPS53-218ENST00000575207 CCDC140Q96MF4 163 aa11.9□□□□□ -0.5
VPS53-218ENST00000575207 IL20Q9NYY1 176 aa11.9□□□□□ -0.5
VPS53-218ENST00000575207 TECRQ9NZ01 308 aaKnown RBP11.9□□□□□ -0.5
VPS53-218ENST00000575207 GADD45GO95257 159 aa11.89□□□□□ -0.51
VPS53-218ENST00000575207 IFNGP01579 166 aa11.89□□□□□ -0.51
VPS53-218ENST00000575207 CSTBP04080 98 aaKnown RBP11.89□□□□□ -0.51
VPS53-218ENST00000575207 ZNF137PP52743 207 aa11.89□□□□□ -0.51
VPS53-218ENST00000575207 SMIM11AP58511 58 aa11.89□□□□□ -0.51
VPS53-218ENST00000575207 LSAMPQ13449 338 aa11.89□□□□□ -0.51
VPS53-218ENST00000575207 Q5VSD8 79 aa11.89□□□□□ -0.51
VPS53-218ENST00000575207 PPP1R27Q86WC6 154 aa11.89□□□□□ -0.51
VPS53-218ENST00000575207 NR2C2APQ86WQ0 139 aa11.89□□□□□ -0.51
VPS53-218ENST00000575207 SYT8Q8NBV8 401 aa11.89□□□□□ -0.51
VPS53-218ENST00000575207 DNAAF1Q8NEP3 725 aa11.89□□□□□ -0.51
VPS53-218ENST00000575207 NPBQ8NG41 125 aa11.89□□□□□ -0.51
VPS53-218ENST00000575207 OR52B4Q8NGK2 314 aa11.89□□□□□ -0.51
VPS53-218ENST00000575207 ZNF503Q96F45 646 aa11.89□□□□□ -0.51
VPS53-218ENST00000575207 RNF126Q9BV68 326 aa11.89□□□□□ -0.51
VPS53-218ENST00000575207 DHDHQ9UQ10 334 aa11.89□□□□□ -0.51
VPS53-218ENST00000575207 IGLV2-18A0A075B6J9 118 aa11.88□□□□□ -0.51
VPS53-218ENST00000575207 RIIAD1A6NNX1 92 aa11.88□□□□□ -0.51
VPS53-218ENST00000575207 LOC110117498-PIK3R3F6TDL0 507 aa11.88□□□□□ -0.51
VPS53-218ENST00000575207 NDUFA3O95167 84 aa11.88□□□□□ -0.51
VPS53-218ENST00000575207 NPPAP01160 153 aa11.88□□□□□ -0.51
VPS53-218ENST00000575207 TRBV12-3P01733 135 aa11.88□□□□□ -0.51
VPS53-218ENST00000575207 ZNF3P17036 446 aa11.88□□□□□ -0.51
VPS53-218ENST00000575207 ZNF829Q3KNS6 432 aaPredicted RBP11.88□□□□□ -0.51
VPS53-218ENST00000575207 Q6P435 159 aa11.88□□□□□ -0.51
VPS53-218ENST00000575207 DEGS2Q6QHC5 323 aa11.88□□□□□ -0.51
VPS53-218ENST00000575207 OTULINQ96BN8 352 aa11.88□□□□□ -0.51
VPS53-218ENST00000575207 C7orf34Q96L11 122 aa11.88□□□□□ -0.51
VPS53-218ENST00000575207 C7orf26Q96N11 449 aa11.88□□□□□ -0.51
VPS53-218ENST00000575207 LAMP5Q9UJQ1 280 aa11.88□□□□□ -0.51
VPS53-218ENST00000575207 GTF2A1LQ9UNN4 478 aa11.88□□□□□ -0.51
VPS53-218ENST00000575207 BAIAP2Q9UQB8 552 aa11.88□□□□□ -0.51
VPS53-218ENST00000575207 A0A1B0GTI1 187 aa11.87□□□□□ -0.51
VPS53-218ENST00000575207 GATBO75879 557 aaKnown RBP11.87□□□□□ -0.51
VPS53-218ENST00000575207 ALOX5APP20292 161 aa11.87□□□□□ -0.51
VPS53-218ENST00000575207 ANKRD55Q3KP44 614 aa11.87□□□□□ -0.51
VPS53-218ENST00000575207 TM4SF20Q53R12 229 aa11.87□□□□□ -0.51
VPS53-218ENST00000575207 TNFAIP8L3Q5GJ75 292 aa11.87□□□□□ -0.51
VPS53-218ENST00000575207 SAMD4BQ5PRF9 694 aaKnown RBP11.87□□□□□ -0.51
VPS53-218ENST00000575207 ZNF343Q6P1L6 599 aa11.87□□□□□ -0.51
VPS53-218ENST00000575207 SLC25A48Q6ZT89 311 aaKnown RBP11.87□□□□□ -0.51
VPS53-218ENST00000575207 LFNGQ8NES3 379 aa11.87□□□□□ -0.51
VPS53-218ENST00000575207 RDH12Q96NR8 316 aa11.87□□□□□ -0.51
VPS53-218ENST00000575207 FAM103A1Q9BTL3 118 aaKnown RBP11.87□□□□□ -0.51
VPS53-218ENST00000575207 TSSK6Q9BXA6 273 aa11.87□□□□□ -0.51
VPS53-218ENST00000575207 MROQ9BYG7 248 aa11.87□□□□□ -0.51
VPS53-218ENST00000575207 GMPR2Q9P2T1 348 aaKnown RBP11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 84.1 ms