RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 GTF2F2P13984 249 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 FOLR2P14207 255 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 ATP6V1B2P21281 511 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 ANOS1P23352 680 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 OPRL1P41146 370 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 MAGEA12P43365 314 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 GPR6P46095 362 aaPredicted RBP2.31□□□□□ -2.04
VPS35-209ENST00000568642 GZMMP51124 257 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 EFNA3P52797 238 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 MFAP2P55001 183 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 TCL1AP56279 114 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 SNAP25P60880 206 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 AP1S1P61966 158 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 BCL2L1Q07817 233 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 TFDP2Q14188 446 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 FASTKQ14296 549 aaKnown RBP2.31□□□□□ -2.04
VPS35-209ENST00000568642 POU6F1Q14863 301 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 TRIP13Q15645 432 aaPredicted RBP2.31□□□□□ -2.04
VPS35-209ENST00000568642 TOMM34Q15785 309 aaPredicted RBP2.31□□□□□ -2.04
VPS35-209ENST00000568642 SLC25A35Q3KQZ1 300 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 ZNF718Q3SXZ3 478 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 PARP15Q460N3 678 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 TRMT12Q53H54 448 aaKnown RBP2.31□□□□□ -2.04
VPS35-209ENST00000568642 PYCR3Q53H96 274 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 WDR38Q5JTN6 314 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 TPTE2P1Q5T6R2 138 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 ZNF324BQ6AW86 544 aaPredicted RBP2.31□□□□□ -2.04
VPS35-209ENST00000568642 RWDD4Q6NW29 188 aaKnown RBP2.31□□□□□ -2.04
VPS35-209ENST00000568642 ZNF544Q6NX49 715 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 TFAP2EQ6VUC0 442 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 CYHR1Q6ZMK1 362 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 FAM231DQ6ZW35 169 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 NEGR1Q7Z3B1 354 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 C1QL2Q7Z5L3 287 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 DPPA2Q7Z7J5 298 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 DHFR2Q86XF0 187 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 LINC00337Q8N6G1 96 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 TMEM161BQ8NDZ6 487 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 OR5AP2Q8NGF4 316 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 OR10G9Q8NGN4 311 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 STOML3Q8TAV4 291 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 C16orf78Q8WTQ4 265 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 ASB17Q8WXJ9 295 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 IFT81Q8WYA0 676 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 STMN2Q93045 179 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 BORCS5Q969J3 196 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 TMBIM1Q969X1 311 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 CPNE2Q96FN4 548 aaPredicted RBP2.31□□□□□ -2.04
VPS35-209ENST00000568642 MRAP2Q96G30 205 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 SEC22AQ96IW7 307 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 PGLYRP3Q96LB9 341 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 PLEKHF1Q96S99 279 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 GPR21Q99679 349 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 DHRS9Q9BPW9 319 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 TIPINQ9BVW5 301 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 HES7Q9BYE0 225 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 PITPNM3Q9BZ71 974 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 ACTR6Q9GZN1 396 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 TAS2R5Q9NYW4 299 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 CALYQ9NYX4 217 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 XCL2Q9UBD3 114 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 CLCF1Q9UBD9 225 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 CIDEBQ9UHD4 219 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 ZNF223Q9UK11 482 aaPredicted RBP2.31□□□□□ -2.04
VPS35-209ENST00000568642 COPS3Q9UNS2 423 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 VDAC3Q9Y277 283 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 FARSAQ9Y285 508 aaKnown RBP2.31□□□□□ -2.04
VPS35-209ENST00000568642 TRAPPC4Q9Y296 219 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 SLC35A3Q9Y2D2 325 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 CARHSP1Q9Y2V2 147 aaKnown RBP2.31□□□□□ -2.04
VPS35-209ENST00000568642 ARL2BPQ9Y2Y0 163 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 GOLT1BQ9Y3E0 138 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 NUBP2Q9Y5Y2 271 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 SELENOKQ9Y6D0 94 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 ZBED9Q6R2W3 1325 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 MYH9P35579 1960 aaKnown RBP2.3□□□□□ -2.04
VPS35-209ENST00000568642 HCFC1P51610 2035 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 LY6G6EA0A0G2JKS1 128 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 EXOC1LA0A1B0GW35 172 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 GJE1A6NN92 205 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 FAM166BA8MTA8 275 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 EFCAB9A8MZ26 197 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 C12orf77C9JDV5 145 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 TNFRSF11BO00300 401 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 KPNA4O00629 521 aaPredicted RBP2.3□□□□□ -2.04
VPS35-209ENST00000568642 NOS1APO75052 506 aaPredicted RBP2.3□□□□□ -2.04
VPS35-209ENST00000568642 SPAG7O75391 227 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 RP2O75695 350 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 C6orf47O95873 294 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 IFNA21P01568 189 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 MT-ND4P03905 459 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 FCGR3AP08637 254 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 HTR1AP08908 422 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 CD37P11049 281 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 IGLL1P15814 213 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 GNB3P16520 340 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 MAKP20794 623 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 S100A1P23297 94 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 MPGP29372 298 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 CD70P32970 193 aa2.3□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms