RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 MBNL3Q9NUK0 354 aaKnown RBP6.97□□□□□ -1.29
SF3B3-212ENST00000568539 OR6C3Q9NZP0 311 aa6.97□□□□□ -1.29
SF3B3-212ENST00000568539 RABL2AQ9UBK7 228 aaPredicted RBP6.97□□□□□ -1.29
SF3B3-212ENST00000568539 LPAR3Q9UBY5 353 aa6.97□□□□□ -1.29
SF3B3-212ENST00000568539 RABL2BQ9UNT1 228 aa6.97□□□□□ -1.29
SF3B3-212ENST00000568539 LINC00312Q9Y6C7 94 aa6.97□□□□□ -1.29
SF3B3-212ENST00000568539 DYSFO75923 2080 aa6.97□□□□□ -1.29
SF3B3-212ENST00000568539 TRGV10A0A0A0MS01 117 aa6.96□□□□□ -1.3
SF3B3-212ENST00000568539 PPIAL4CA0A0B4J2A2 164 aa6.96□□□□□ -1.3
SF3B3-212ENST00000568539 IGHV2-70DA0A0C4DH43 119 aa6.96□□□□□ -1.3
SF3B3-212ENST00000568539 KIR2DS1A0A191URI9 304 aa6.96□□□□□ -1.3
SF3B3-212ENST00000568539 A0A1W2PQ09 198 aa6.96□□□□□ -1.3
SF3B3-212ENST00000568539 MEX3AA1L020 520 aaKnown RBP6.96□□□□□ -1.3
SF3B3-212ENST00000568539 MEIOCA2RUB1 952 aa6.96□□□□□ -1.3
SF3B3-212ENST00000568539 CTDSPLO15194 276 aa6.96□□□□□ -1.3
SF3B3-212ENST00000568539 ENSAO43768 121 aaKnown RBP6.96□□□□□ -1.3
SF3B3-212ENST00000568539 PPIAL4GP0DN37 164 aa6.96□□□□□ -1.3
SF3B3-212ENST00000568539 CGB3P0DN86 165 aa6.96□□□□□ -1.3
SF3B3-212ENST00000568539 CGB7P0DN87 165 aa6.96□□□□□ -1.3
SF3B3-212ENST00000568539 CCL3L1P16619 93 aa6.96□□□□□ -1.3
SF3B3-212ENST00000568539 RCC1P18754 421 aaPredicted RBP6.96□□□□□ -1.3
SF3B3-212ENST00000568539 DTYMKP23919 212 aa6.96□□□□□ -1.3
SF3B3-212ENST00000568539 PTBP1P26599 531 aaKnown RBP eCLIP6.96□□□□□ -1.3
SF3B3-212ENST00000568539 PRSS3P35030 304 aa6.96□□□□□ -1.3
SF3B3-212ENST00000568539 GLP1RP43220 463 aa6.96□□□□□ -1.3
SF3B3-212ENST00000568539 GZMKP49863 264 aa6.96□□□□□ -1.3
SF3B3-212ENST00000568539 MRPS15P82914 257 aaKnown RBP6.96□□□□□ -1.3
SF3B3-212ENST00000568539 ZNF79Q15937 498 aa6.96□□□□□ -1.3
SF3B3-212ENST00000568539 SPANXN2Q5MJ10 180 aa6.96□□□□□ -1.3
SF3B3-212ENST00000568539 MOB1BQ7L9L4 216 aa6.96□□□□□ -1.3
SF3B3-212ENST00000568539 TRAPPC6BQ86SZ2 158 aa6.96□□□□□ -1.3
SF3B3-212ENST00000568539 FAM185AQ8N0U4 392 aa6.96□□□□□ -1.3
SF3B3-212ENST00000568539 MFSD4AQ8N468 514 aa6.96□□□□□ -1.3
SF3B3-212ENST00000568539 ZNF565Q8N9K5 539 aa6.96□□□□□ -1.3
SF3B3-212ENST00000568539 LINC01356Q8N9X3 169 aa6.96□□□□□ -1.3
SF3B3-212ENST00000568539 MRGPRDQ8TDS7 321 aa6.96□□□□□ -1.3
SF3B3-212ENST00000568539 GPX8Q8TED1 209 aa6.96□□□□□ -1.3
SF3B3-212ENST00000568539 CCDC107Q8WV48 283 aa6.96□□□□□ -1.3
SF3B3-212ENST00000568539 MSI2Q96DH6 328 aaKnown RBP6.96□□□□□ -1.3
SF3B3-212ENST00000568539 EAF1Q96JC9 268 aaPredicted RBP6.96□□□□□ -1.3
SF3B3-212ENST00000568539 SCPEP1Q9HB40 452 aa6.96□□□□□ -1.3
SF3B3-212ENST00000568539 Q9N2K0 584 aa6.96□□□□□ -1.3
SF3B3-212ENST00000568539 AKIP1Q9NQ31 210 aa6.96□□□□□ -1.3
SF3B3-212ENST00000568539 MMP26Q9NRE1 261 aa6.96□□□□□ -1.3
SF3B3-212ENST00000568539 TAS2R3Q9NYW6 316 aa6.96□□□□□ -1.3
SF3B3-212ENST00000568539 TRAPPC2LQ9UL33 140 aa6.96□□□□□ -1.3
SF3B3-212ENST00000568539 UBE2J1Q9Y385 318 aaPredicted RBP6.96□□□□□ -1.3
SF3B3-212ENST00000568539 TRAV20A0A0B4J274 112 aa6.95□□□□□ -1.3
SF3B3-212ENST00000568539 KBTBD11-OT1A0A1B0GTJ5 212 aa6.95□□□□□ -1.3
SF3B3-212ENST00000568539 MEIS3P1A6NDR6 274 aa6.95□□□□□ -1.3
SF3B3-212ENST00000568539 ZNF729A6NN14 1252 aaPredicted RBP6.95□□□□□ -1.3
SF3B3-212ENST00000568539 C12orf77C9JDV5 145 aa6.95□□□□□ -1.3
SF3B3-212ENST00000568539 C15orf65H3BRN8 121 aa6.95□□□□□ -1.3
SF3B3-212ENST00000568539 GABARAPH6UMI1 98 aa6.95□□□□□ -1.3
SF3B3-212ENST00000568539 SULT1C2O00338 296 aa6.95□□□□□ -1.3
SF3B3-212ENST00000568539 SMAD7O15105 426 aaKnown RBP6.95□□□□□ -1.3
SF3B3-212ENST00000568539 ORC5O43913 435 aa6.95□□□□□ -1.3
SF3B3-212ENST00000568539 PF4P02776 101 aa6.95□□□□□ -1.3
SF3B3-212ENST00000568539 LPLP06858 475 aa6.95□□□□□ -1.3
SF3B3-212ENST00000568539 LIPFP07098 398 aa6.95□□□□□ -1.3
SF3B3-212ENST00000568539 INHBBP09529 407 aa6.95□□□□□ -1.3
SF3B3-212ENST00000568539 ZNF728P0DKX0 622 aa6.95□□□□□ -1.3
SF3B3-212ENST00000568539 HOXB4P17483 251 aaPredicted RBP6.95□□□□□ -1.3
SF3B3-212ENST00000568539 GZMHP20718 246 aa6.95□□□□□ -1.3
SF3B3-212ENST00000568539 EPHA1P21709 976 aa6.95□□□□□ -1.3
SF3B3-212ENST00000568539 SSTR5P35346 364 aa6.95□□□□□ -1.3
SF3B3-212ENST00000568539 CBX5P45973 191 aa6.95□□□□□ -1.3
SF3B3-212ENST00000568539 DLX6P56179 175 aa6.95□□□□□ -1.3
SF3B3-212ENST00000568539 MRPS10P82664 201 aaKnown RBP6.95□□□□□ -1.3
SF3B3-212ENST00000568539 DGCR2P98153 550 aa6.95□□□□□ -1.3
SF3B3-212ENST00000568539 ZNF45Q02386 682 aa6.95□□□□□ -1.3
SF3B3-212ENST00000568539 HMGN3Q15651 99 aa6.95□□□□□ -1.3
SF3B3-212ENST00000568539 SRSF7Q16629 238 aaKnown RBP eCLIP6.95□□□□□ -1.3
SF3B3-212ENST00000568539 C17orf58Q2M2W7 97 aa6.95□□□□□ -1.3
SF3B3-212ENST00000568539 C6orf183Q5T699 404 aa6.95□□□□□ -1.3
SF3B3-212ENST00000568539 Q6ZS49 121 aa6.95□□□□□ -1.3
SF3B3-212ENST00000568539 C1orf229Q6ZS94 237 aaPredicted RBP6.95□□□□□ -1.3
SF3B3-212ENST00000568539 ZNF554Q86TJ5 538 aa6.95□□□□□ -1.3
SF3B3-212ENST00000568539 C11orf42Q8N5U0 333 aa6.95□□□□□ -1.3
SF3B3-212ENST00000568539 KIR3DL3Q8N743 410 aa6.95□□□□□ -1.3
SF3B3-212ENST00000568539 GVQW1Q8N7I0 195 aa6.95□□□□□ -1.3
SF3B3-212ENST00000568539 OR52I2Q8NH67 350 aa6.95□□□□□ -1.3
SF3B3-212ENST00000568539 SETD6Q8TBK2 473 aa6.95□□□□□ -1.3
SF3B3-212ENST00000568539 SMIM4Q8WVI0 70 aa6.95□□□□□ -1.3
SF3B3-212ENST00000568539 FCAMRQ8WWV6 532 aa6.95□□□□□ -1.3
SF3B3-212ENST00000568539 MAFIPQ8WZ33 124 aa6.95□□□□□ -1.3
SF3B3-212ENST00000568539 TMEM186Q96B77 213 aa6.95□□□□□ -1.3
SF3B3-212ENST00000568539 ZNF714Q96N38 554 aa6.95□□□□□ -1.3
SF3B3-212ENST00000568539 ST6GALNAC5Q9BVH7 336 aa6.95□□□□□ -1.3
SF3B3-212ENST00000568539 SRRQ9GZT4 340 aa6.95□□□□□ -1.3
SF3B3-212ENST00000568539 LINC00574Q9H8X3 128 aa6.95□□□□□ -1.3
SF3B3-212ENST00000568539 TAF9BQ9HBM6 251 aa6.95□□□□□ -1.3
SF3B3-212ENST00000568539 CALYQ9NYX4 217 aa6.95□□□□□ -1.3
SF3B3-212ENST00000568539 OPN4Q9UHM6 478 aa6.95□□□□□ -1.3
SF3B3-212ENST00000568539 ZNF230Q9UIE0 474 aaPredicted RBP6.95□□□□□ -1.3
SF3B3-212ENST00000568539 ANAPC10Q9UM13 185 aa6.95□□□□□ -1.3
SF3B3-212ENST00000568539 INSIG2Q9Y5U4 225 aa6.95□□□□□ -1.3
SF3B3-212ENST00000568539 CHD3Q12873 2000 aaKnown RBP6.94□□□□□ -1.3
SF3B3-212ENST00000568539 IGKV1D-8A0A087WSZ0 117 aa6.94□□□□□ -1.3
SF3B3-212ENST00000568539 A0A1W2PPH5 198 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms