RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, human

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-223	ENST00000568488	RPP25L	Q8N5L8	163 aa	Known RBP	12.39	□□□□□ -0.43
CLK3-223	ENST00000568488	MBOAT4	Q96T53	435 aa		12.39	□□□□□ -0.43
CLK3-223	ENST00000568488	TBX5	Q99593	518 aa		12.39	□□□□□ -0.43
CLK3-223	ENST00000568488	ST6GALNAC5	Q9BVH7	336 aa		12.39	□□□□□ -0.43
CLK3-223	ENST00000568488	CEPT1	Q9Y6K0	416 aa		12.39	□□□□□ -0.43
CLK3-223	ENST00000568488	BRI3	O95415	125 aa		12.38	□□□□□ -0.43
CLK3-223	ENST00000568488	ZNF20	P17024	532 aa		12.38	□□□□□ -0.43
CLK3-223	ENST00000568488	SSX6	Q7RTT6	188 aa		12.38	□□□□□ -0.43
CLK3-223	ENST00000568488	BCDIN3D	Q7Z5W3	292 aa	Known RBP	12.38	□□□□□ -0.43
CLK3-223	ENST00000568488	UBALD1	Q8TB05	177 aa		12.38	□□□□□ -0.43
CLK3-223	ENST00000568488	PLPPR1	Q8TBJ4	325 aa		12.38	□□□□□ -0.43
CLK3-223	ENST00000568488	GATAD1	Q8WUU5	269 aa		12.38	□□□□□ -0.43
CLK3-223	ENST00000568488	SPSB1	Q96BD6	273 aa		12.38	□□□□□ -0.43
CLK3-223	ENST00000568488	NCOR1P1	Q9H4R4	102 aa		12.38	□□□□□ -0.43
CLK3-223	ENST00000568488	MAGIX	Q9H6Y5	334 aa		12.38	□□□□□ -0.43
CLK3-223	ENST00000568488	CLN6	Q9NWW5	311 aa		12.38	□□□□□ -0.43
CLK3-223	ENST00000568488	H2AFY2	Q9P0M6	372 aa	Predicted RBP	12.38	□□□□□ -0.43
CLK3-223	ENST00000568488	IGHV3-43	A0A0B4J1X8	118 aa		12.37	□□□□□ -0.43
CLK3-223	ENST00000568488		H0Y980	276 aa		12.37	□□□□□ -0.43
CLK3-223	ENST00000568488	SDCBP	O00560	298 aa	Predicted RBP	12.37	□□□□□ -0.43
CLK3-223	ENST00000568488	IGHV3-43D	P0DP04	118 aa		12.37	□□□□□ -0.43
CLK3-223	ENST00000568488	TMEM225B	P0DP42	221 aa		12.37	□□□□□ -0.43
CLK3-223	ENST00000568488	PRDX6	P30041	224 aa		12.37	□□□□□ -0.43
CLK3-223	ENST00000568488	BLVRB	P30043	206 aa	Predicted RBP	12.37	□□□□□ -0.43
CLK3-223	ENST00000568488	FAM98B	Q52LJ0	330 aa	Known RBP	12.37	□□□□□ -0.43
CLK3-223	ENST00000568488	RSBN1	Q5VWQ0	802 aa	Predicted RBP	12.37	□□□□□ -0.43
CLK3-223	ENST00000568488	TMEM179B	Q7Z7N9	219 aa		12.37	□□□□□ -0.43
CLK3-223	ENST00000568488	PRSS35	Q8N3Z0	413 aa		12.37	□□□□□ -0.43
CLK3-223	ENST00000568488	LINC00311	Q8N616	119 aa		12.37	□□□□□ -0.43
CLK3-223	ENST00000568488	MINDY2	Q8NBR6	621 aa		12.37	□□□□□ -0.43
CLK3-223	ENST00000568488	RHOF	Q9HBH0	211 aa		12.37	□□□□□ -0.43
CLK3-223	ENST00000568488	ADGRL4	Q9HBW9	690 aa		12.37	□□□□□ -0.43
CLK3-223	ENST00000568488	SLC25A19	Q9HC21	320 aa		12.37	□□□□□ -0.43
CLK3-223	ENST00000568488	ERGIC3	Q9Y282	383 aa		12.37	□□□□□ -0.43
CLK3-223	ENST00000568488	A3GALT2	U3KPV4	340 aa		12.37	□□□□□ -0.43
CLK3-223	ENST00000568488	IGHV7-81	A0A0B4J1V7	117 aa		12.36	□□□□□ -0.43
CLK3-223	ENST00000568488	TRAV24	A0A0B4J272	114 aa		12.36	□□□□□ -0.43
CLK3-223	ENST00000568488	TCRBV5S2	A0A599	114 aa		12.36	□□□□□ -0.43
CLK3-223	ENST00000568488	SOX15	O60248	233 aa		12.36	□□□□□ -0.43
CLK3-223	ENST00000568488	PMS2P11	Q13670	270 aa		12.36	□□□□□ -0.43
CLK3-223	ENST00000568488	UTS2B	Q765I0	119 aa		12.36	□□□□□ -0.43
CLK3-223	ENST00000568488	SAXO1	Q8IYX7	474 aa		12.36	□□□□□ -0.43
CLK3-223	ENST00000568488	CNIH3	Q8TBE1	160 aa		12.36	□□□□□ -0.43
CLK3-223	ENST00000568488	ARL11	Q969Q4	196 aa		12.36	□□□□□ -0.43
CLK3-223	ENST00000568488	NABP2	Q9BQ15	211 aa		12.36	□□□□□ -0.43
CLK3-223	ENST00000568488	CXorf65	A6NEN9	183 aa		12.35	□□□□□ -0.43
CLK3-223	ENST00000568488	METTL15	A6NJ78	407 aa		12.35	□□□□□ -0.43
CLK3-223	ENST00000568488	GNGT2	O14610	69 aa		12.35	□□□□□ -0.43
CLK3-223	ENST00000568488	SLC31A2	O15432	143 aa		12.35	□□□□□ -0.43
CLK3-223	ENST00000568488	TXNL1	O43396	289 aa		12.35	□□□□□ -0.43
CLK3-223	ENST00000568488	PRKY	O43930	277 aa		12.35	□□□□□ -0.43
CLK3-223	ENST00000568488	APOL3	O95236	402 aa		12.35	□□□□□ -0.43
CLK3-223	ENST00000568488	CST1	P01037	141 aa		12.35	□□□□□ -0.43
CLK3-223	ENST00000568488	HLA-DRB1	P01911	266 aa		12.35	□□□□□ -0.43
CLK3-223	ENST00000568488	UBC	P0CG48	685 aa	Known RBP	12.35	□□□□□ -0.43
CLK3-223	ENST00000568488	GZMH	P20718	246 aa		12.35	□□□□□ -0.43
CLK3-223	ENST00000568488	OR13C9	Q8NGT0	318 aa		12.35	□□□□□ -0.43
CLK3-223	ENST00000568488	UTP4	Q969X6	686 aa	Known RBP	12.35	□□□□□ -0.43
CLK3-223	ENST00000568488	MS4A10	Q96PG2	267 aa		12.35	□□□□□ -0.43
CLK3-223	ENST00000568488	ZNF251	Q9BRH9	671 aa		12.35	□□□□□ -0.43
CLK3-223	ENST00000568488	ANKRD60	Q9BZ19	345 aa		12.35	□□□□□ -0.43
CLK3-223	ENST00000568488	PLEKHA3	Q9HB20	300 aa		12.35	□□□□□ -0.43
CLK3-223	ENST00000568488	FOXA2	Q9Y261	457 aa	Predicted RBP	12.35	□□□□□ -0.43
CLK3-223	ENST00000568488	RGS11	O94810	467 aa		12.34	□□□□□ -0.43
CLK3-223	ENST00000568488	PRKACG	P22612	351 aa		12.34	□□□□□ -0.43
CLK3-223	ENST00000568488	VHL	P40337	213 aa		12.34	□□□□□ -0.43
CLK3-223	ENST00000568488	ACTB	P60709	375 aa		12.34	□□□□□ -0.43
CLK3-223	ENST00000568488	RAB40B	Q12829	278 aa		12.34	□□□□□ -0.43
CLK3-223	ENST00000568488	GK3P	Q14409	553 aa		12.34	□□□□□ -0.43
CLK3-223	ENST00000568488	LIN54	Q6MZP7	749 aa		12.34	□□□□□ -0.43
CLK3-223	ENST00000568488	FAHD1	Q6P587	224 aa		12.34	□□□□□ -0.43
CLK3-223	ENST00000568488	DEFB107A	Q8IZN7	70 aa		12.34	□□□□□ -0.43
CLK3-223	ENST00000568488	HS3ST5	Q8IZT8	346 aa		12.34	□□□□□ -0.43
CLK3-223	ENST00000568488	OR52M1	Q8NGK5	317 aa		12.34	□□□□□ -0.43
CLK3-223	ENST00000568488	RITA1	Q96K30	269 aa		12.34	□□□□□ -0.43
CLK3-223	ENST00000568488	GFOD1	Q9NXC2	390 aa		12.34	□□□□□ -0.43
CLK3-223	ENST00000568488	SHISA3	A0PJX4	238 aa		12.33	□□□□□ -0.44
CLK3-223	ENST00000568488	ARPC1B	O15143	372 aa	Known RBP	12.33	□□□□□ -0.44
CLK3-223	ENST00000568488	DEDD	O75618	318 aa		12.33	□□□□□ -0.44
CLK3-223	ENST00000568488	CSTB	P04080	98 aa	Known RBP	12.33	□□□□□ -0.44
CLK3-223	ENST00000568488	DBT	P11182	482 aa	Known RBP	12.33	□□□□□ -0.44
CLK3-223	ENST00000568488	TMEM244	Q5VVB8	128 aa		12.33	□□□□□ -0.44
CLK3-223	ENST00000568488	SLC25A48	Q6ZT89	311 aa	Known RBP	12.33	□□□□□ -0.44
CLK3-223	ENST00000568488	C8orf31	Q8N9H6	132 aa		12.33	□□□□□ -0.44
CLK3-223	ENST00000568488	ABHD5	Q8WTS1	349 aa		12.33	□□□□□ -0.44
CLK3-223	ENST00000568488	CCDC107	Q8WV48	283 aa		12.33	□□□□□ -0.44
CLK3-223	ENST00000568488	FBXO7	Q9Y3I1	522 aa		12.33	□□□□□ -0.44
CLK3-223	ENST00000568488		A0A1W2PQL4	384 aa	Predicted RBP	12.32	□□□□□ -0.44
CLK3-223	ENST00000568488		M0R129	80 aa		12.32	□□□□□ -0.44
CLK3-223	ENST00000568488	CNIH1	O95406	144 aa		12.32	□□□□□ -0.44
CLK3-223	ENST00000568488	KCNJ3	P48549	501 aa		12.32	□□□□□ -0.44
CLK3-223	ENST00000568488	TPPP2	P59282	170 aa		12.32	□□□□□ -0.44
CLK3-223	ENST00000568488	LSAMP	Q13449	338 aa		12.32	□□□□□ -0.44
CLK3-223	ENST00000568488	ZSCAN26	Q16670	478 aa		12.32	□□□□□ -0.44
CLK3-223	ENST00000568488	LRRC36	Q1X8D7	754 aa		12.32	□□□□□ -0.44
CLK3-223	ENST00000568488	C5orf64	Q2M2E5	130 aa		12.32	□□□□□ -0.44
CLK3-223	ENST00000568488	LINC00322	Q6ZN03	302 aa	Predicted RBP	12.32	□□□□□ -0.44
CLK3-223	ENST00000568488	DHFR2	Q86XF0	187 aa		12.32	□□□□□ -0.44
CLK3-223	ENST00000568488	OR10AC1	Q8NH08	325 aa		12.32	□□□□□ -0.44
CLK3-223	ENST00000568488	CST11	Q9H112	138 aa		12.32	□□□□□ -0.44

Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms