RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 MRPS24Q96EL2 167 aaKnown RBP16.57■□□□□ 0.24
CLN3-219ENST00000565778 CITED2Q99967 270 aaPredicted RBP16.57■□□□□ 0.24
CLN3-219ENST00000565778 NKX1-2Q9UD57 310 aaPredicted RBP16.57■□□□□ 0.24
CLN3-219ENST00000565778 MCRIP1C9JLW8 97 aa16.56■□□□□ 0.24
CLN3-219ENST00000565778 PIN1P1O15428 100 aa16.56■□□□□ 0.24
CLN3-219ENST00000565778 LPLP06858 475 aa16.56■□□□□ 0.24
CLN3-219ENST00000565778 AWAT2Q6E213 333 aa16.56■□□□□ 0.24
CLN3-219ENST00000565778 NDUFA11Q86Y39 141 aa16.56■□□□□ 0.24
CLN3-219ENST00000565778 OR10X1Q8NGY0 326 aa16.56■□□□□ 0.24
CLN3-219ENST00000565778 THRSPQ92748 146 aa16.56■□□□□ 0.24
CLN3-219ENST00000565778 BANF2Q9H503 90 aa16.56■□□□□ 0.24
CLN3-219ENST00000565778 SPACA1Q9HBV2 294 aa16.56■□□□□ 0.24
CLN3-219ENST00000565778 FKBP14Q9NWM8 211 aa16.56■□□□□ 0.24
CLN3-219ENST00000565778 A0A1W2PPE3 182 aa16.55■□□□□ 0.24
CLN3-219ENST00000565778 MT-ND4P03905 459 aa16.55■□□□□ 0.24
CLN3-219ENST00000565778 CDK1P06493 297 aa16.55■□□□□ 0.24
CLN3-219ENST00000565778 MAPK3P27361 379 aaPredicted RBP16.55■□□□□ 0.24
CLN3-219ENST00000565778 FBLN7Q53RD9 439 aa16.55■□□□□ 0.24
CLN3-219ENST00000565778 C9orf152Q5JTZ5 239 aa16.55■□□□□ 0.24
CLN3-219ENST00000565778 C6orf141Q5SZD1 244 aa16.55■□□□□ 0.24
CLN3-219ENST00000565778 THNSL2Q86YJ6 484 aa16.55■□□□□ 0.24
CLN3-219ENST00000565778 UBALD1Q8TB05 177 aa16.55■□□□□ 0.24
CLN3-219ENST00000565778 WIPF2Q8TF74 440 aaPredicted RBP16.55■□□□□ 0.24
CLN3-219ENST00000565778 MYDGFQ969H8 173 aa16.55■□□□□ 0.24
CLN3-219ENST00000565778 R3HDM4Q96D70 268 aa16.55■□□□□ 0.24
CLN3-219ENST00000565778 SELENOIQ9C0D9 397 aa16.55■□□□□ 0.24
CLN3-219ENST00000565778 SCN3BQ9NY72 215 aa16.55■□□□□ 0.24
CLN3-219ENST00000565778 SH2D7A6NKC9 451 aaPredicted RBP16.54■□□□□ 0.24
CLN3-219ENST00000565778 AIPO00170 330 aa16.54■□□□□ 0.24
CLN3-219ENST00000565778 SDCBPO00560 298 aaPredicted RBP16.54■□□□□ 0.24
CLN3-219ENST00000565778 ORC5O43913 435 aa16.54■□□□□ 0.24
CLN3-219ENST00000565778 CRTAPO75718 401 aaPredicted RBP16.54■□□□□ 0.24
CLN3-219ENST00000565778 SNRNP70P08621 437 aaKnown RBP16.54■□□□□ 0.24
CLN3-219ENST00000565778 RAB7AP51149 207 aa16.54■□□□□ 0.24
CLN3-219ENST00000565778 DIAPH2-AS1Q14236 149 aa16.54■□□□□ 0.24
CLN3-219ENST00000565778 HES1Q14469 280 aa16.54■□□□□ 0.24
CLN3-219ENST00000565778 ACSM3Q53FZ2 586 aa16.54■□□□□ 0.24
CLN3-219ENST00000565778 ZNF497Q6ZNH5 498 aa16.54■□□□□ 0.24
CLN3-219ENST00000565778 DRAM1Q8N682 238 aa16.54■□□□□ 0.24
CLN3-219ENST00000565778 OR56B4Q8NH76 319 aa16.54■□□□□ 0.24
CLN3-219ENST00000565778 MND1Q9BWT6 205 aa16.54■□□□□ 0.24
CLN3-219ENST00000565778 TRAPPC2LQ9UL33 140 aa16.54■□□□□ 0.24
CLN3-219ENST00000565778 PEX16Q9Y5Y5 336 aa16.54■□□□□ 0.24
CLN3-219ENST00000565778 FAM90A18PA6NE21 464 aa16.53■□□□□ 0.24
CLN3-219ENST00000565778 FAM90A16PA6NEW6 464 aa16.53■□□□□ 0.24
CLN3-219ENST00000565778 FAM90A20PA6NIJ5 464 aa16.53■□□□□ 0.24
CLN3-219ENST00000565778 FAM90A9PA6NNJ1 464 aa16.53■□□□□ 0.24
CLN3-219ENST00000565778 FAM90A12PA8MX19 464 aa16.53■□□□□ 0.24
CLN3-219ENST00000565778 FAM90A5PA8MXJ8 464 aa16.53■□□□□ 0.24
CLN3-219ENST00000565778 C15orf65H3BRN8 121 aa16.53■□□□□ 0.24
CLN3-219ENST00000565778 M0QZK8 103 aa16.53■□□□□ 0.24
CLN3-219ENST00000565778 FAM90A15PP0C7V4 464 aa16.53■□□□□ 0.24
CLN3-219ENST00000565778 FAM90A13PP0C7W8 464 aa16.53■□□□□ 0.24
CLN3-219ENST00000565778 FAM90A14PP0C7W9 464 aa16.53■□□□□ 0.24
CLN3-219ENST00000565778 FAM90A24PP0C7X0 464 aa16.53■□□□□ 0.24
CLN3-219ENST00000565778 GABPB1Q06547 395 aaPredicted RBP16.53■□□□□ 0.24
CLN3-219ENST00000565778 RAB12Q6IQ22 244 aa16.53■□□□□ 0.24
CLN3-219ENST00000565778 MS4A15Q8N5U1 240 aa16.53■□□□□ 0.24
CLN3-219ENST00000565778 OR4F17Q8NGA8 305 aa16.53■□□□□ 0.24
CLN3-219ENST00000565778 OR52M1Q8NGK5 317 aa16.53■□□□□ 0.24
CLN3-219ENST00000565778 OR4F4Q96R69 305 aa16.53■□□□□ 0.24
CLN3-219ENST00000565778 ETAA1Q9NY74 926 aa16.53■□□□□ 0.24
CLN3-219ENST00000565778 G3V4G9 280 aa16.52■□□□□ 0.24
CLN3-219ENST00000565778 GAPDHP04406 335 aaKnown RBP16.52■□□□□ 0.24
CLN3-219ENST00000565778 AMY1AP04745 511 aa16.52■□□□□ 0.24
CLN3-219ENST00000565778 AMY2AP04746 511 aa16.52■□□□□ 0.24
CLN3-219ENST00000565778 MGMTP16455 207 aa16.52■□□□□ 0.24
CLN3-219ENST00000565778 HNF4GQ14541 408 aa16.52■□□□□ 0.24
CLN3-219ENST00000565778 INSL4Q14641 139 aa16.52■□□□□ 0.24
CLN3-219ENST00000565778 SPHARQ15513 63 aa16.52■□□□□ 0.24
CLN3-219ENST00000565778 SYT6Q5T7P8 510 aaPredicted RBP16.52■□□□□ 0.24
CLN3-219ENST00000565778 RNLSQ5VYX0 342 aa16.52■□□□□ 0.24
CLN3-219ENST00000565778 UNQ9370/PRO34162Q6UXP9 181 aa16.52■□□□□ 0.24
CLN3-219ENST00000565778 MOB3BQ86TA1 216 aa16.52■□□□□ 0.24
CLN3-219ENST00000565778 OR8H3Q8N146 312 aa16.52■□□□□ 0.24
CLN3-219ENST00000565778 NKAIN3Q8N8D7 197 aa16.52■□□□□ 0.24
CLN3-219ENST00000565778 TMEM104Q8NE00 496 aa16.52■□□□□ 0.24
CLN3-219ENST00000565778 OR4K15Q8NH41 348 aa16.52■□□□□ 0.24
CLN3-219ENST00000565778 UQCC2Q9BRT2 126 aa16.52■□□□□ 0.24
CLN3-219ENST00000565778 TMED9Q9BVK6 235 aa16.52■□□□□ 0.24
CLN3-219ENST00000565778 IGHV3-43A0A0B4J1X8 118 aa16.51■□□□□ 0.23
CLN3-219ENST00000565778 A0A1W2PPI3 338 aa16.51■□□□□ 0.23
CLN3-219ENST00000565778 A0A1W2PRX2 142 aa16.51■□□□□ 0.23
CLN3-219ENST00000565778 H0YHG0 523 aa16.51■□□□□ 0.23
CLN3-219ENST00000565778 CCRL2O00421 344 aa16.51■□□□□ 0.23
CLN3-219ENST00000565778 IGHV3-43DP0DP04 118 aa16.51■□□□□ 0.23
CLN3-219ENST00000565778 TMEM11P17152 192 aa16.51■□□□□ 0.23
CLN3-219ENST00000565778 FUT3P21217 361 aa16.51■□□□□ 0.23
CLN3-219ENST00000565778 VHLP40337 213 aa16.51■□□□□ 0.23
CLN3-219ENST00000565778 CD83Q01151 205 aa16.51■□□□□ 0.23
CLN3-219ENST00000565778 MED22Q15528 200 aa16.51■□□□□ 0.23
CLN3-219ENST00000565778 LYPD6Q86Y78 171 aa16.51■□□□□ 0.23
CLN3-219ENST00000565778 GFOD1Q9NXC2 390 aa16.51■□□□□ 0.23
CLN3-219ENST00000565778 RCC2Q9P258 522 aaKnown RBP16.51■□□□□ 0.23
CLN3-219ENST00000565778 MOB4Q9Y3A3 225 aa16.51■□□□□ 0.23
CLN3-219ENST00000565778 TCRBV4S1A1TA0A5B7 111 aa16.5■□□□□ 0.23
CLN3-219ENST00000565778 UBE2QL1A1L167 161 aa16.5■□□□□ 0.23
CLN3-219ENST00000565778 FAM90A10PA6NDY2 464 aa16.5■□□□□ 0.23
CLN3-219ENST00000565778 FAM90A7PA6NKC0 464 aa16.5■□□□□ 0.23
CLN3-219ENST00000565778 ADARB2-AS1A8MUL3 147 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms