RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 C4orf3Q8WVX3 66 aa12.84□□□□□ -0.35
CLN3-208ENST00000561505 LGALS12Q96DT0 336 aa12.84□□□□□ -0.35
CLN3-208ENST00000561505 CHCHD6Q9BRQ6 235 aa12.84□□□□□ -0.35
CLN3-208ENST00000561505 IL36GQ9NZH8 169 aa12.84□□□□□ -0.35
CLN3-208ENST00000561505 HSPB6O14558 160 aa12.83□□□□□ -0.36
CLN3-208ENST00000561505 ORC5O43913 435 aa12.83□□□□□ -0.36
CLN3-208ENST00000561505 ALPLP05186 524 aa12.83□□□□□ -0.36
CLN3-208ENST00000561505 HCKP08631 526 aa12.83□□□□□ -0.36
CLN3-208ENST00000561505 GABRB1P18505 474 aa12.83□□□□□ -0.36
CLN3-208ENST00000561505 GNG10P50151 68 aa12.83□□□□□ -0.36
CLN3-208ENST00000561505 INSL3P51460 131 aa12.83□□□□□ -0.36
CLN3-208ENST00000561505 RUNX1Q01196 453 aa12.83□□□□□ -0.36
CLN3-208ENST00000561505 LCNL1Q6ZST4 164 aa12.83□□□□□ -0.36
CLN3-208ENST00000561505 SUMF2Q8NBJ7 301 aa12.83□□□□□ -0.36
CLN3-208ENST00000561505 RTN4IP1Q8WWV3 396 aaPredicted RBP12.83□□□□□ -0.36
CLN3-208ENST00000561505 CPNE2Q96FN4 548 aaPredicted RBP12.83□□□□□ -0.36
CLN3-208ENST00000561505 PRR25Q96S07 402 aa12.83□□□□□ -0.36
CLN3-208ENST00000561505 S1PR3Q99500 378 aa12.83□□□□□ -0.36
CLN3-208ENST00000561505 DPCDQ9BVM2 203 aaPredicted RBP12.83□□□□□ -0.36
CLN3-208ENST00000561505 ISG20L2Q9H9L3 353 aaKnown RBP12.83□□□□□ -0.36
CLN3-208ENST00000561505 ZNF581Q9P0T4 197 aa12.83□□□□□ -0.36
CLN3-208ENST00000561505 A0A1W2PPE3 182 aa12.82□□□□□ -0.36
CLN3-208ENST00000561505 E9PI62 339 aa12.82□□□□□ -0.36
CLN3-208ENST00000561505 PPIFP30405 207 aaKnown RBP12.82□□□□□ -0.36
CLN3-208ENST00000561505 DEFB136Q30KP8 78 aa12.82□□□□□ -0.36
CLN3-208ENST00000561505 PIGYQ3MUY2 71 aa12.82□□□□□ -0.36
CLN3-208ENST00000561505 MOB3BQ86TA1 216 aa12.82□□□□□ -0.36
CLN3-208ENST00000561505 ZNF439Q8NDP4 499 aa12.82□□□□□ -0.36
CLN3-208ENST00000561505 OR51A2Q8NGJ7 313 aa12.82□□□□□ -0.36
CLN3-208ENST00000561505 MRPL48Q96GC5 212 aaKnown RBP12.82□□□□□ -0.36
CLN3-208ENST00000561505 NR1H4Q96RI1 486 aaPredicted RBP12.82□□□□□ -0.36
CLN3-208ENST00000561505 MYCBPQ99417 103 aaPredicted RBP12.82□□□□□ -0.36
CLN3-208ENST00000561505 MRPS18AQ9NVS2 196 aaKnown RBP12.82□□□□□ -0.36
CLN3-208ENST00000561505 IMPAD1Q9NX62 359 aa12.82□□□□□ -0.36
CLN3-208ENST00000561505 GFOD1Q9NXC2 390 aa12.82□□□□□ -0.36
CLN3-208ENST00000561505 ZNF256Q9Y2P7 627 aaPredicted RBP12.82□□□□□ -0.36
CLN3-208ENST00000561505 GMPPBQ9Y5P6 360 aa12.82□□□□□ -0.36
CLN3-208ENST00000561505 TENM2Q9NT68 2774 aa12.81□□□□□ -0.36
CLN3-208ENST00000561505 IGHV3-72A0A0B4J1Y9 119 aa12.81□□□□□ -0.36
CLN3-208ENST00000561505 TRAV39A0A0B4J263 110 aa12.81□□□□□ -0.36
CLN3-208ENST00000561505 SEC14L6B5MCN3 397 aa12.81□□□□□ -0.36
CLN3-208ENST00000561505 I3L521 148 aa12.81□□□□□ -0.36
CLN3-208ENST00000561505 MOSP00540 346 aa12.81□□□□□ -0.36
CLN3-208ENST00000561505 RAB3AP20336 220 aa12.81□□□□□ -0.36
CLN3-208ENST00000561505 ZSCAN26Q16670 478 aa12.81□□□□□ -0.36
CLN3-208ENST00000561505 LINC00596Q86U02 117 aa12.81□□□□□ -0.36
CLN3-208ENST00000561505 LHFPL3Q86UP9 236 aa12.81□□□□□ -0.36
CLN3-208ENST00000561505 GAPTQ8N292 157 aa12.81□□□□□ -0.36
CLN3-208ENST00000561505 OR5AK2Q8NH90 309 aa12.81□□□□□ -0.36
CLN3-208ENST00000561505 TNFAIP8L1Q8WVP5 186 aa12.81□□□□□ -0.36
CLN3-208ENST00000561505 RGP1Q92546 391 aaPredicted RBP12.81□□□□□ -0.36
CLN3-208ENST00000561505 PDCD1LG2Q9BQ51 273 aa12.81□□□□□ -0.36
CLN3-208ENST00000561505 HSPB9Q9BQS6 159 aa12.81□□□□□ -0.36
CLN3-208ENST00000561505 ALG8Q9BVK2 526 aa12.81□□□□□ -0.36
CLN3-208ENST00000561505 FAM118AQ9NWS6 357 aa12.81□□□□□ -0.36
CLN3-208ENST00000561505 DHDHQ9UQ10 334 aa12.81□□□□□ -0.36
CLN3-208ENST00000561505 SACSQ9NZJ4 4579 aa12.81□□□□□ -0.36
CLN3-208ENST00000561505 TMEM30CPA0ZSE6 113 aa12.8□□□□□ -0.36
CLN3-208ENST00000561505 NCBP2LA6PVI3 153 aaKnown RBP12.8□□□□□ -0.36
CLN3-208ENST00000561505 TXNL1O43396 289 aa12.8□□□□□ -0.36
CLN3-208ENST00000561505 RRP9O43818 475 aaKnown RBP12.8□□□□□ -0.36
CLN3-208ENST00000561505 MT-ND4P03905 459 aa12.8□□□□□ -0.36
CLN3-208ENST00000561505 REG1BP48304 166 aa12.8□□□□□ -0.36
CLN3-208ENST00000561505 RBM11P57052 281 aaKnown RBP12.8□□□□□ -0.36
CLN3-208ENST00000561505 LTC4SQ16873 150 aa12.8□□□□□ -0.36
CLN3-208ENST00000561505 CASC10Q5T4H9 136 aa12.8□□□□□ -0.36
CLN3-208ENST00000561505 ASPHD1Q5U4P2 390 aa12.8□□□□□ -0.36
CLN3-208ENST00000561505 STEAP3Q658P3 488 aa12.8□□□□□ -0.36
CLN3-208ENST00000561505 ZNF497Q6ZNH5 498 aa12.8□□□□□ -0.36
CLN3-208ENST00000561505 SLC25A48Q6ZT89 311 aaKnown RBP12.8□□□□□ -0.36
CLN3-208ENST00000561505 OR10K1Q8NGX5 313 aa12.8□□□□□ -0.36
CLN3-208ENST00000561505 UBE2E2Q96LR5 201 aa12.8□□□□□ -0.36
CLN3-208ENST00000561505 ERVK13-1Q9NX77 482 aa12.8□□□□□ -0.36
CLN3-208ENST00000561505 ST3GAL6Q9Y274 331 aa12.8□□□□□ -0.36
CLN3-208ENST00000561505 FAM90A10PA6NDY2 464 aa12.79□□□□□ -0.36
CLN3-208ENST00000561505 SNTNA6NMZ2 147 aa12.79□□□□□ -0.36
CLN3-208ENST00000561505 ZNF736B4DX44 427 aaPredicted RBP12.79□□□□□ -0.36
CLN3-208ENST00000561505 IGLV1-40P01703 118 aa12.79□□□□□ -0.36
CLN3-208ENST00000561505 ECI1P42126 302 aa12.79□□□□□ -0.36
CLN3-208ENST00000561505 F2RL1P55085 397 aa12.79□□□□□ -0.36
CLN3-208ENST00000561505 RSU1Q15404 277 aa12.79□□□□□ -0.36
CLN3-208ENST00000561505 MPV17LQ2QL34 196 aa12.79□□□□□ -0.36
CLN3-208ENST00000561505 TMEM30BQ3MIR4 351 aa12.79□□□□□ -0.36
CLN3-208ENST00000561505 FAM53AQ6NSI3 398 aaPredicted RBP12.79□□□□□ -0.36
CLN3-208ENST00000561505 OR52N1Q8NH53 320 aa12.79□□□□□ -0.36
CLN3-208ENST00000561505 RHOXF1Q8NHV9 184 aa12.79□□□□□ -0.36
CLN3-208ENST00000561505 ARL11Q969Q4 196 aa12.79□□□□□ -0.36
CLN3-208ENST00000561505 KCTD7Q96MP8 289 aa12.79□□□□□ -0.36
CLN3-208ENST00000561505 JAM3Q9BX67 310 aa12.79□□□□□ -0.36
CLN3-208ENST00000561505 IL3RAP26951 378 aa12.78□□□□□ -0.36
CLN3-208ENST00000561505 SOX6P35712 828 aa12.78□□□□□ -0.36
CLN3-208ENST00000561505 ZNF134P52741 427 aa12.78□□□□□ -0.36
CLN3-208ENST00000561505 RAB25P57735 213 aa12.78□□□□□ -0.36
CLN3-208ENST00000561505 ZNF491Q8N8L2 437 aa12.78□□□□□ -0.36
CLN3-208ENST00000561505 OR11H1Q8NG94 326 aa12.78□□□□□ -0.36
CLN3-208ENST00000561505 MUC7Q8TAX7 377 aa12.78□□□□□ -0.36
CLN3-208ENST00000561505 RASL11BQ9BPW5 248 aa12.78□□□□□ -0.36
CLN3-208ENST00000561505 RCC2Q9P258 522 aaKnown RBP12.78□□□□□ -0.36
CLN3-208ENST00000561505 SMAD5-AS1Q9Y6J3 95 aa12.78□□□□□ -0.36
CLN3-208ENST00000561505 SAC3D1A6NKF1 404 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 73.2 ms