RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 RCC1P18754 421 aaPredicted RBP17.79■□□□□ 0.44
SNX1-210ENST00000560260 CDK2P24941 298 aa17.79■□□□□ 0.44
SNX1-210ENST00000560260 FOXB2Q5VYV0 432 aa17.79■□□□□ 0.44
SNX1-210ENST00000560260 BRD3OSQ6XYD6 125 aa17.79■□□□□ 0.44
SNX1-210ENST00000560260 GAL3ST2Q9H3Q3 398 aa17.79■□□□□ 0.44
SNX1-210ENST00000560260 MBNL3Q9NUK0 354 aaKnown RBP17.79■□□□□ 0.44
SNX1-210ENST00000560260 CCDC59Q9P031 241 aaKnown RBP17.79■□□□□ 0.44
SNX1-210ENST00000560260 ZNF69Q9UC07 566 aa17.79■□□□□ 0.44
SNX1-210ENST00000560260 RSL24D1Q9UHA3 163 aaKnown RBP17.79■□□□□ 0.44
SNX1-210ENST00000560260 DPPA5A6NC42 116 aa17.78■□□□□ 0.44
SNX1-210ENST00000560260 C12orf77C9JDV5 145 aa17.78■□□□□ 0.44
SNX1-210ENST00000560260 EIF4EP06730 217 aaKnown RBP17.78■□□□□ 0.44
SNX1-210ENST00000560260 SRD5A1P18405 259 aa17.78■□□□□ 0.44
SNX1-210ENST00000560260 COX7A1P24310 79 aa17.78■□□□□ 0.44
SNX1-210ENST00000560260 DYNC1I2Q13409 638 aaKnown RBP17.78■□□□□ 0.44
SNX1-210ENST00000560260 FAM189A2Q15884 450 aa17.78■□□□□ 0.44
SNX1-210ENST00000560260 UBE2NLQ5JXB2 153 aa17.78■□□□□ 0.44
SNX1-210ENST00000560260 ZNF880Q6PDB4 577 aa17.78■□□□□ 0.44
SNX1-210ENST00000560260 HEPN1Q6WQI6 88 aa17.78■□□□□ 0.44
SNX1-210ENST00000560260 ACOT12Q8WYK0 555 aa17.78■□□□□ 0.44
SNX1-210ENST00000560260 ABCG5Q9H222 651 aa17.78■□□□□ 0.44
SNX1-210ENST00000560260 LINC00574Q9H8X3 128 aa17.78■□□□□ 0.44
SNX1-210ENST00000560260 NUP50Q9UKX7 468 aa17.78■□□□□ 0.44
SNX1-210ENST00000560260 TRAPPC2LQ9UL33 140 aa17.78■□□□□ 0.44
SNX1-210ENST00000560260 SESN1Q9Y6P5 492 aa17.78■□□□□ 0.44
SNX1-210ENST00000560260 ZFHX3Q15911 3703 aa17.78■□□□□ 0.44
SNX1-210ENST00000560260 NF1P21359 2839 aa17.78■□□□□ 0.44
SNX1-210ENST00000560260 NAV3Q8IVL0 2385 aa17.78■□□□□ 0.44
SNX1-210ENST00000560260 IGHV1-69DA0A0B4J2H0 117 aa17.77■□□□□ 0.44
SNX1-210ENST00000560260 A0A1W2PRD5 423 aa17.77■□□□□ 0.44
SNX1-210ENST00000560260 A0A1W2PRF3 423 aa17.77■□□□□ 0.44
SNX1-210ENST00000560260 A0A1W2PRM7 423 aa17.77■□□□□ 0.44
SNX1-210ENST00000560260 NPIPB11E5RHQ5 1161 aa17.77■□□□□ 0.44
SNX1-210ENST00000560260 IGHV1-69P01742 117 aa17.77■□□□□ 0.44
SNX1-210ENST00000560260 GPR157Q5UAW9 335 aa17.77■□□□□ 0.44
SNX1-210ENST00000560260 IZUMO1Q8IYV9 350 aa17.77■□□□□ 0.44
SNX1-210ENST00000560260 BCL6BQ8N143 479 aaPredicted RBP17.77■□□□□ 0.44
SNX1-210ENST00000560260 DTX3Q8N9I9 347 aa17.77■□□□□ 0.44
SNX1-210ENST00000560260 RFESDQ8TAC1 157 aa17.77■□□□□ 0.44
SNX1-210ENST00000560260 C22orf15Q8WYQ4 148 aa17.77■□□□□ 0.44
SNX1-210ENST00000560260 KIRREL1Q96J84 757 aa17.77■□□□□ 0.44
SNX1-210ENST00000560260 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP17.77■□□□□ 0.44
SNX1-210ENST00000560260 NIPBLQ6KC79 2804 aaeCLIP17.77■□□□□ 0.43
SNX1-210ENST00000560260 SMIM31A0A1B0GVY4 71 aa17.76■□□□□ 0.43
SNX1-210ENST00000560260 FAM172BPA6NC97 362 aa17.76■□□□□ 0.43
SNX1-210ENST00000560260 HPGDSO60760 199 aa17.76■□□□□ 0.43
SNX1-210ENST00000560260 EPHA1P21709 976 aa17.76■□□□□ 0.43
SNX1-210ENST00000560260 ZNF260Q3ZCT1 412 aa17.76■□□□□ 0.43
SNX1-210ENST00000560260 CDNFQ49AH0 187 aa17.76■□□□□ 0.43
SNX1-210ENST00000560260 NCR3LG1Q68D85 454 aa17.76■□□□□ 0.43
SNX1-210ENST00000560260 FAM53AQ6NSI3 398 aaPredicted RBP17.76■□□□□ 0.43
SNX1-210ENST00000560260 TEX29Q8N6K0 151 aa17.76■□□□□ 0.43
SNX1-210ENST00000560260 ZNF565Q8N9K5 539 aa17.76■□□□□ 0.43
SNX1-210ENST00000560260 CMSS1Q9BQ75 279 aaKnown RBP17.76■□□□□ 0.43
SNX1-210ENST00000560260 SUCNR1Q9BXA5 334 aa17.76■□□□□ 0.43
SNX1-210ENST00000560260 TRBV6-6A0A0A6YYG2 114 aa17.75■□□□□ 0.43
SNX1-210ENST00000560260 TMEM235A6NFC5 223 aa17.75■□□□□ 0.43
SNX1-210ENST00000560260 ZNF701M0R085 212 aaPredicted RBP17.75■□□□□ 0.43
SNX1-210ENST00000560260 SCGNO76038 276 aa17.75■□□□□ 0.43
SNX1-210ENST00000560260 FAM157CP0CG43 387 aa17.75■□□□□ 0.43
SNX1-210ENST00000560260 LTC4SQ16873 150 aa17.75■□□□□ 0.43
SNX1-210ENST00000560260 PIP4P2Q8N4L2 257 aa17.75■□□□□ 0.43
SNX1-210ENST00000560260 OR1L1Q8NH94 360 aa17.75■□□□□ 0.43
SNX1-210ENST00000560260 AP3S1Q92572 193 aa17.75■□□□□ 0.43
SNX1-210ENST00000560260 ARL11Q969Q4 196 aa17.75■□□□□ 0.43
SNX1-210ENST00000560260 SLIRPQ9GZT3 109 aaKnown RBP17.75■□□□□ 0.43
SNX1-210ENST00000560260 MIXL1Q9H2W2 232 aa17.75■□□□□ 0.43
SNX1-210ENST00000560260 CHMP1AQ9HD42 196 aaPredicted RBP17.75■□□□□ 0.43
SNX1-210ENST00000560260 C12orf4Q9NQ89 552 aa17.75■□□□□ 0.43
SNX1-210ENST00000560260 IDI2-AS1Q9NZ38 188 aa17.75■□□□□ 0.43
SNX1-210ENST00000560260 TRAV18A0A075B6X5 111 aa17.74■□□□□ 0.43
SNX1-210ENST00000560260 hCG_1809904A0A1W2PP81 198 aa17.74■□□□□ 0.43
SNX1-210ENST00000560260 A0A1W2PPE2 198 aa17.74■□□□□ 0.43
SNX1-210ENST00000560260 A0A1W2PR64 198 aa17.74■□□□□ 0.43
SNX1-210ENST00000560260 A0A1W2PRV1 198 aa17.74■□□□□ 0.43
SNX1-210ENST00000560260 SERPINE3A8MV23 424 aa17.74■□□□□ 0.43
SNX1-210ENST00000560260 ORC5O43913 435 aa17.74■□□□□ 0.43
SNX1-210ENST00000560260 PTHLHP12272 177 aa17.74■□□□□ 0.43
SNX1-210ENST00000560260 ELK1P19419 428 aa17.74■□□□□ 0.43
SNX1-210ENST00000560260 HMGN3Q15651 99 aa17.74■□□□□ 0.43
SNX1-210ENST00000560260 TUSC1Q2TAM9 212 aa17.74■□□□□ 0.43
SNX1-210ENST00000560260 C6orf183Q5T699 404 aa17.74■□□□□ 0.43
SNX1-210ENST00000560260 C9orf139Q6ZV77 190 aa17.74■□□□□ 0.43
SNX1-210ENST00000560260 DCUN1D5Q9BTE7 237 aa17.74■□□□□ 0.43
SNX1-210ENST00000560260 TMEM133Q9H2Q1 129 aa17.74■□□□□ 0.43
SNX1-210ENST00000560260 TAF9BQ9HBM6 251 aa17.74■□□□□ 0.43
SNX1-210ENST00000560260 ZNF286AQ9HBT8 521 aa17.74■□□□□ 0.43
SNX1-210ENST00000560260 A0A0A6YYH2 397 aa17.73■□□□□ 0.43
SNX1-210ENST00000560260 A6NJ64 397 aa17.73■□□□□ 0.43
SNX1-210ENST00000560260 ODF3BA8MYP8 253 aa17.73■□□□□ 0.43
SNX1-210ENST00000560260 HBZP02008 142 aa17.73■□□□□ 0.43
SNX1-210ENST00000560260 FCGR3AP08637 254 aa17.73■□□□□ 0.43
SNX1-210ENST00000560260 CD3GP09693 182 aa17.73■□□□□ 0.43
SNX1-210ENST00000560260 GZMHP20718 246 aa17.73■□□□□ 0.43
SNX1-210ENST00000560260 SOX6P35712 828 aa17.73■□□□□ 0.43
SNX1-210ENST00000560260 UBE2E1P51965 193 aa17.73■□□□□ 0.43
SNX1-210ENST00000560260 SETD6Q8TBK2 473 aa17.73■□□□□ 0.43
SNX1-210ENST00000560260 NUDCD2Q8WVJ2 157 aa17.73■□□□□ 0.43
SNX1-210ENST00000560260 ZNF48Q96MX3 618 aaPredicted RBP17.73■□□□□ 0.43
SNX1-210ENST00000560260 HEXA-AS1Q9H8Q6 139 aa17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms