RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 CNOT2Q9NZN8 540 aaKnown RBP13.01□□□□□ -0.33
VPS29-207ENST00000549970 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.01□□□□□ -0.33
VPS29-207ENST00000549970 MOB4Q9Y3A3 225 aa13.01□□□□□ -0.33
VPS29-207ENST00000549970 TRBV5-7A0A0A0MS05 114 aa13□□□□□ -0.33
VPS29-207ENST00000549970 A0A1W2PPI3 338 aa13□□□□□ -0.33
VPS29-207ENST00000549970 TCRBV4S1A1TA0A5B7 111 aa13□□□□□ -0.33
VPS29-207ENST00000549970 FAM90A18PA6NE21 464 aa13□□□□□ -0.33
VPS29-207ENST00000549970 FAM90A16PA6NEW6 464 aa13□□□□□ -0.33
VPS29-207ENST00000549970 FAM90A20PA6NIJ5 464 aa13□□□□□ -0.33
VPS29-207ENST00000549970 FAM90A9PA6NNJ1 464 aa13□□□□□ -0.33
VPS29-207ENST00000549970 FAM90A12PA8MX19 464 aa13□□□□□ -0.33
VPS29-207ENST00000549970 FAM90A5PA8MXJ8 464 aa13□□□□□ -0.33
VPS29-207ENST00000549970 M0QZK8 103 aa13□□□□□ -0.33
VPS29-207ENST00000549970 MYL12BO14950 172 aa13□□□□□ -0.33
VPS29-207ENST00000549970 MAS1P04201 325 aa13□□□□□ -0.33
VPS29-207ENST00000549970 FAM90A15PP0C7V4 464 aa13□□□□□ -0.33
VPS29-207ENST00000549970 FAM90A13PP0C7W8 464 aa13□□□□□ -0.33
VPS29-207ENST00000549970 FAM90A14PP0C7W9 464 aa13□□□□□ -0.33
VPS29-207ENST00000549970 FAM90A24PP0C7X0 464 aa13□□□□□ -0.33
VPS29-207ENST00000549970 HES1Q14469 280 aa13□□□□□ -0.33
VPS29-207ENST00000549970 OXLD1Q5BKU9 147 aa13□□□□□ -0.33
VPS29-207ENST00000549970 OGFRL1Q5TC84 451 aaPredicted RBP13□□□□□ -0.33
VPS29-207ENST00000549970 C10orf99Q6UWK7 81 aa13□□□□□ -0.33
VPS29-207ENST00000549970 GLIPR1L1Q6UWM5 242 aa13□□□□□ -0.33
VPS29-207ENST00000549970 STX19Q8N4C7 294 aa13□□□□□ -0.33
VPS29-207ENST00000549970 BPIFB6Q8NFQ5 453 aa13□□□□□ -0.33
VPS29-207ENST00000549970 ARL11Q969Q4 196 aa13□□□□□ -0.33
VPS29-207ENST00000549970 PSORS1C1Q9UIG5 152 aa13□□□□□ -0.33
VPS29-207ENST00000549970 MRPS28Q9Y2Q9 187 aaKnown RBP13□□□□□ -0.33
VPS29-207ENST00000549970 AIPO00170 330 aa12.99□□□□□ -0.33
VPS29-207ENST00000549970 PF4V1P10720 104 aa12.99□□□□□ -0.33
VPS29-207ENST00000549970 TMEM11P17152 192 aa12.99□□□□□ -0.33
VPS29-207ENST00000549970 CELP19835 753 aa12.99□□□□□ -0.33
VPS29-207ENST00000549970 GZMHP20718 246 aa12.99□□□□□ -0.33
VPS29-207ENST00000549970 RAB7AP51149 207 aa12.99□□□□□ -0.33
VPS29-207ENST00000549970 WNT4P56705 351 aa12.99□□□□□ -0.33
VPS29-207ENST00000549970 DOC2BQ14184 412 aa12.99□□□□□ -0.33
VPS29-207ENST00000549970 GPR176Q14439 515 aa12.99□□□□□ -0.33
VPS29-207ENST00000549970 HNF4GQ14541 408 aa12.99□□□□□ -0.33
VPS29-207ENST00000549970 TCTEX1D4Q5JR98 221 aa12.99□□□□□ -0.33
VPS29-207ENST00000549970 KHDC1LQ5JSQ8 128 aa12.99□□□□□ -0.33
VPS29-207ENST00000549970 KPRPQ5T749 579 aaPredicted RBP12.99□□□□□ -0.33
VPS29-207ENST00000549970 AWAT2Q6E213 333 aa12.99□□□□□ -0.33
VPS29-207ENST00000549970 SLC16A12Q6ZSM3 486 aa12.99□□□□□ -0.33
VPS29-207ENST00000549970 THNSL2Q86YJ6 484 aa12.99□□□□□ -0.33
VPS29-207ENST00000549970 OR8H3Q8N146 312 aa12.99□□□□□ -0.33
VPS29-207ENST00000549970 OR4X2Q8NGF9 303 aa12.99□□□□□ -0.33
VPS29-207ENST00000549970 DERL3Q96Q80 235 aa12.99□□□□□ -0.33
VPS29-207ENST00000549970 IGHV3-43A0A0B4J1X8 118 aa12.98□□□□□ -0.33
VPS29-207ENST00000549970 ANKRD65E5RJM6 399 aa12.98□□□□□ -0.33
VPS29-207ENST00000549970 C15orf65H3BRN8 121 aa12.98□□□□□ -0.33
VPS29-207ENST00000549970 SDCBPO00560 298 aaPredicted RBP12.98□□□□□ -0.33
VPS29-207ENST00000549970 HSD17B6O14756 317 aa12.98□□□□□ -0.33
VPS29-207ENST00000549970 CASQ2O14958 399 aaPredicted RBP12.98□□□□□ -0.33
VPS29-207ENST00000549970 IGKV1D-33P01593 117 aa12.98□□□□□ -0.33
VPS29-207ENST00000549970 IGKV1-33P01594 117 aa12.98□□□□□ -0.33
VPS29-207ENST00000549970 IGHV3-43DP0DP04 118 aa12.98□□□□□ -0.33
VPS29-207ENST00000549970 REG1BP48304 166 aa12.98□□□□□ -0.33
VPS29-207ENST00000549970 FAM53AQ6NSI3 398 aaPredicted RBP12.98□□□□□ -0.33
VPS29-207ENST00000549970 ZNF497Q6ZNH5 498 aa12.98□□□□□ -0.33
VPS29-207ENST00000549970 FBLIM1Q8WUP2 373 aa12.98□□□□□ -0.33
VPS29-207ENST00000549970 MYDGFQ969H8 173 aa12.98□□□□□ -0.33
VPS29-207ENST00000549970 BANF2Q9H503 90 aa12.98□□□□□ -0.33
VPS29-207ENST00000549970 TSSC4Q9Y5U2 329 aaPredicted RBP12.98□□□□□ -0.33
VPS29-207ENST00000549970 MCRIP1C9JLW8 97 aa12.97□□□□□ -0.33
VPS29-207ENST00000549970 PIN1P1O15428 100 aa12.97□□□□□ -0.33
VPS29-207ENST00000549970 MT-ND4P03905 459 aa12.97□□□□□ -0.33
VPS29-207ENST00000549970 CD33P20138 364 aa12.97□□□□□ -0.33
VPS29-207ENST00000549970 MOB3BQ86TA1 216 aa12.97□□□□□ -0.33
VPS29-207ENST00000549970 SPACA1Q9HBV2 294 aa12.97□□□□□ -0.33
VPS29-207ENST00000549970 PLCXD1Q9NUJ7 323 aa12.97□□□□□ -0.33
VPS29-207ENST00000549970 GFOD1Q9NXC2 390 aa12.97□□□□□ -0.33
VPS29-207ENST00000549970 ETAA1Q9NY74 926 aa12.97□□□□□ -0.33
VPS29-207ENST00000549970 RCC2Q9P258 522 aaKnown RBP12.97□□□□□ -0.33
VPS29-207ENST00000549970 IGHV3-72A0A0B4J1Y9 119 aa12.96□□□□□ -0.33
VPS29-207ENST00000549970 CCRL2O00421 344 aa12.96□□□□□ -0.33
VPS29-207ENST00000549970 ORC5O43913 435 aa12.96□□□□□ -0.33
VPS29-207ENST00000549970 PF4P02776 101 aa12.96□□□□□ -0.33
VPS29-207ENST00000549970 MGMTP16455 207 aa12.96□□□□□ -0.33
VPS29-207ENST00000549970 VHLP40337 213 aa12.96□□□□□ -0.33
VPS29-207ENST00000549970 LOXL3P58215 753 aa12.96□□□□□ -0.33
VPS29-207ENST00000549970 ZNF816Q0VGE8 651 aaPredicted RBP12.96□□□□□ -0.33
VPS29-207ENST00000549970 SYT6Q5T7P8 510 aaPredicted RBP12.96□□□□□ -0.33
VPS29-207ENST00000549970 RAB12Q6IQ22 244 aa12.96□□□□□ -0.33
VPS29-207ENST00000549970 NANOGP1Q8N7R0 232 aa12.96□□□□□ -0.33
VPS29-207ENST00000549970 C5orf56Q8N8D9 126 aa12.96□□□□□ -0.33
VPS29-207ENST00000549970 TMEM104Q8NE00 496 aa12.96□□□□□ -0.33
VPS29-207ENST00000549970 OR52M1Q8NGK5 317 aa12.96□□□□□ -0.33
VPS29-207ENST00000549970 OR4K15Q8NH41 348 aa12.96□□□□□ -0.33
VPS29-207ENST00000549970 MRPS24Q96EL2 167 aaKnown RBP12.96□□□□□ -0.33
VPS29-207ENST00000549970 SELENOIQ9C0D9 397 aa12.96□□□□□ -0.33
VPS29-207ENST00000549970 VCXQ9H320 206 aa12.96□□□□□ -0.33
VPS29-207ENST00000549970 TRAPPC2LQ9UL33 140 aa12.96□□□□□ -0.33
VPS29-207ENST00000549970 ERGIC3Q9Y282 383 aa12.96□□□□□ -0.33
VPS29-207ENST00000549970 PEX16Q9Y5Y5 336 aa12.96□□□□□ -0.33
VPS29-207ENST00000549970 IGHV1-3A0A0C4DH29 117 aa12.95□□□□□ -0.34
VPS29-207ENST00000549970 PSMB11A5LHX3 300 aa12.95□□□□□ -0.34
VPS29-207ENST00000549970 C12orf77C9JDV5 145 aa12.95□□□□□ -0.34
VPS29-207ENST00000549970 CRTAPO75718 401 aaPredicted RBP12.95□□□□□ -0.34
VPS29-207ENST00000549970 GAPDHP04406 335 aaKnown RBP12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms