RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 F12P00748 615 aaPredicted RBP14.09□□□□□ -0.15
CUX1-213ENST00000549414 DAOP14920 347 aa14.09□□□□□ -0.15
CUX1-213ENST00000549414 P2RY4P51582 365 aa14.09□□□□□ -0.15
CUX1-213ENST00000549414 SSX2Q16385 188 aa14.09□□□□□ -0.15
CUX1-213ENST00000549414 RTL8BQ17RB0 113 aa14.09□□□□□ -0.15
CUX1-213ENST00000549414 CBLN2Q8IUK8 224 aa14.09□□□□□ -0.15
CUX1-213ENST00000549414 OR1K1Q8NGR3 316 aa14.09□□□□□ -0.15
CUX1-213ENST00000549414 RND1Q92730 232 aa14.09□□□□□ -0.15
CUX1-213ENST00000549414 OR10C1Q96KK4 312 aa14.09□□□□□ -0.15
CUX1-213ENST00000549414 GFI1Q99684 422 aa14.09□□□□□ -0.15
CUX1-213ENST00000549414 KIAA2026Q5HYC2 2103 aa14.09□□□□□ -0.15
CUX1-213ENST00000549414 GALR2O43603 387 aaPredicted RBP14.09□□□□□ -0.15
CUX1-213ENST00000549414 OR7C2O60412 319 aa14.09□□□□□ -0.15
CUX1-213ENST00000549414 NHLH2Q02577 135 aa14.09□□□□□ -0.15
CUX1-213ENST00000549414 PHYHD1Q5SRE7 291 aa14.09□□□□□ -0.15
CUX1-213ENST00000549414 BHLHA15Q7RTS1 189 aaPredicted RBP14.09□□□□□ -0.15
CUX1-213ENST00000549414 SLC26A1Q9H2B4 701 aa14.09□□□□□ -0.15
CUX1-213ENST00000549414 WSB1Q9Y6I7 421 aa14.09□□□□□ -0.15
CUX1-213ENST00000549414 A0A1W2PRD5 423 aa14.08□□□□□ -0.15
CUX1-213ENST00000549414 A0A1W2PRF3 423 aa14.08□□□□□ -0.15
CUX1-213ENST00000549414 A0A1W2PRM7 423 aa14.08□□□□□ -0.15
CUX1-213ENST00000549414 OR5H1A6NKK0 313 aa14.08□□□□□ -0.15
CUX1-213ENST00000549414 EFNA2O43921 213 aa14.08□□□□□ -0.15
CUX1-213ENST00000549414 FAM3AP98173 230 aa14.08□□□□□ -0.15
CUX1-213ENST00000549414 PLAC9Q5JTB6 97 aa14.08□□□□□ -0.15
CUX1-213ENST00000549414 TIPARPQ7Z3E1 657 aaKnown RBP14.08□□□□□ -0.15
CUX1-213ENST00000549414 FAM131CQ96AQ9 280 aa14.08□□□□□ -0.15
CUX1-213ENST00000549414 TVP23CQ96ET8 276 aa14.08□□□□□ -0.15
CUX1-213ENST00000549414 RAB40CQ96S21 281 aa14.08□□□□□ -0.15
CUX1-213ENST00000549414 SOSTQ9BQB4 213 aa14.08□□□□□ -0.15
CUX1-213ENST00000549414 CTNNBIP1Q9NSA3 81 aaPredicted RBP14.08□□□□□ -0.15
CUX1-213ENST00000549414 FOXO1Q12778 655 aa14.08□□□□□ -0.16
CUX1-213ENST00000549414 GMPPAQ96IJ6 420 aaPredicted RBP14.08□□□□□ -0.16
CUX1-213ENST00000549414 UQCC1Q9NVA1 299 aa14.08□□□□□ -0.16
CUX1-213ENST00000549414 LAMP3Q9UQV4 416 aa14.08□□□□□ -0.16
CUX1-213ENST00000549414 OSGIN2Q9Y236 505 aa14.08□□□□□ -0.16
CUX1-213ENST00000549414 IGHV3OR15-7A0A075B7D8 119 aa14.08□□□□□ -0.16
CUX1-213ENST00000549414 PPIHO43447 177 aaKnown RBP14.08□□□□□ -0.16
CUX1-213ENST00000549414 IL3RAP26951 378 aa14.08□□□□□ -0.16
CUX1-213ENST00000549414 RIPPLY2Q5TAB7 128 aa14.08□□□□□ -0.16
CUX1-213ENST00000549414 UQCC3Q6UW78 93 aa14.08□□□□□ -0.16
CUX1-213ENST00000549414 NTNG2Q96CW9 530 aa14.08□□□□□ -0.16
CUX1-213ENST00000549414 SAMD10Q9BYL1 202 aa14.08□□□□□ -0.16
CUX1-213ENST00000549414 PATZ1Q9HBE1 687 aaKnown RBP14.08□□□□□ -0.16
CUX1-213ENST00000549414 DNAH12Q6ZR08 3092 aa14.08□□□□□ -0.16
CUX1-213ENST00000549414 TMEM218A2RU14 115 aa14.07□□□□□ -0.16
CUX1-213ENST00000549414 CEACAM21Q3KPI0 293 aa14.07□□□□□ -0.16
CUX1-213ENST00000549414 ZNF441Q8N8Z8 693 aa14.07□□□□□ -0.16
CUX1-213ENST00000549414 TRAF4Q9BUZ4 470 aaPredicted RBP14.07□□□□□ -0.16
CUX1-213ENST00000549414 SLC25A22Q9H936 323 aa14.07□□□□□ -0.16
CUX1-213ENST00000549414 PCNX2A6NKB5 2137 aa14.07□□□□□ -0.16
CUX1-213ENST00000549414 A0A1B0GTI1 187 aa14.07□□□□□ -0.16
CUX1-213ENST00000549414 C1QL1O75973 258 aa14.07□□□□□ -0.16
CUX1-213ENST00000549414 OR5G3P0C626 314 aa14.07□□□□□ -0.16
CUX1-213ENST00000549414 PSG2P11465 335 aa14.07□□□□□ -0.16
CUX1-213ENST00000549414 TNFRSF1AP19438 455 aa14.07□□□□□ -0.16
CUX1-213ENST00000549414 LPAR3Q9UBY5 353 aa14.07□□□□□ -0.16
CUX1-213ENST00000549414 A0A1W2PPH5 198 aa14.07□□□□□ -0.16
CUX1-213ENST00000549414 CCL21O00585 134 aa14.07□□□□□ -0.16
CUX1-213ENST00000549414 PPP1R2P9O14990 202 aa14.07□□□□□ -0.16
CUX1-213ENST00000549414 SYNGR2O43760 224 aa14.07□□□□□ -0.16
CUX1-213ENST00000549414 CEBPDP49716 269 aaPredicted RBP14.07□□□□□ -0.16
CUX1-213ENST00000549414 DVL1P1P54792 670 aaPredicted RBP14.07□□□□□ -0.16
CUX1-213ENST00000549414 RPL11P62913 178 aaKnown RBP14.07□□□□□ -0.16
CUX1-213ENST00000549414 HLA-DRB3P79483 266 aa14.07□□□□□ -0.16
CUX1-213ENST00000549414 PLAURQ03405 335 aa14.07□□□□□ -0.16
CUX1-213ENST00000549414 LAMTOR1Q6IAA8 161 aa14.07□□□□□ -0.16
CUX1-213ENST00000549414 FAM214BQ7L5A3 538 aa14.07□□□□□ -0.16
CUX1-213ENST00000549414 C17orf82Q86X59 251 aaPredicted RBP14.07□□□□□ -0.16
CUX1-213ENST00000549414 SLC35E1Q96K37 410 aa14.07□□□□□ -0.16
CUX1-213ENST00000549414 ZNF319Q9P2F9 582 aa14.07□□□□□ -0.16
CUX1-213ENST00000549414 OR2W1Q9Y3N9 320 aa14.07□□□□□ -0.16
CUX1-213ENST00000549414 FRMPD3Q5JV73 1810 aa14.07□□□□□ -0.16
CUX1-213ENST00000549414 MDH2P40926 338 aaKnown RBP14.07□□□□□ -0.16
CUX1-213ENST00000549414 ACY3Q96HD9 319 aa14.07□□□□□ -0.16
CUX1-213ENST00000549414 CABLES2Q9BTV7 478 aa14.07□□□□□ -0.16
CUX1-213ENST00000549414 MTCH1Q9NZJ7 389 aa14.07□□□□□ -0.16
CUX1-213ENST00000549414 DLL1O00548 723 aa14.06□□□□□ -0.16
CUX1-213ENST00000549414 PPP1CCP36873 323 aaKnown RBP14.06□□□□□ -0.16
CUX1-213ENST00000549414 ACOT6Q3I5F7 207 aaPredicted RBP14.06□□□□□ -0.16
CUX1-213ENST00000549414 C10orf128Q5T292 105 aa14.06□□□□□ -0.16
CUX1-213ENST00000549414 OPN3Q9H1Y3 402 aaPredicted RBP14.06□□□□□ -0.16
CUX1-213ENST00000549414 PPP1R14DQ9NXH3 145 aa14.06□□□□□ -0.16
CUX1-213ENST00000549414 HOXD11P31277 338 aaPredicted RBP14.06□□□□□ -0.16
CUX1-213ENST00000549414 TMEM41BQ5BJD5 291 aa14.06□□□□□ -0.16
CUX1-213ENST00000549414 ISOC2Q96AB3 205 aa14.06□□□□□ -0.16
CUX1-213ENST00000549414 GLRX2Q9NS18 164 aa14.06□□□□□ -0.16
CUX1-213ENST00000549414 KCNIP2Q9NS61 270 aa14.06□□□□□ -0.16
CUX1-213ENST00000549414 FLI1Q01543 452 aaPredicted RBP14.06□□□□□ -0.16
CUX1-213ENST00000549414 EWSR1Q01844 656 aaKnown RBP eCLIP14.06□□□□□ -0.162e-6■■■□□ 16.9
CUX1-213ENST00000549414 UBAC2Q8NBM4 344 aa14.06□□□□□ -0.16
CUX1-213ENST00000549414 Q96M66 194 aa14.06□□□□□ -0.16
CUX1-213ENST00000549414 MRPL13Q9BYD1 178 aaKnown RBP14.06□□□□□ -0.16
CUX1-213ENST00000549414 A0A1W2PPE3 182 aa14.05□□□□□ -0.16
CUX1-213ENST00000549414 CYTIPO60759 359 aa14.05□□□□□ -0.16
CUX1-213ENST00000549414 CLPSP04118 112 aa14.05□□□□□ -0.16
CUX1-213ENST00000549414 ARL3P36405 182 aa14.05□□□□□ -0.16
CUX1-213ENST00000549414 FAM24BQ8N5W8 94 aa14.05□□□□□ -0.16
CUX1-213ENST00000549414 WNT2BQ93097 391 aa14.05□□□□□ -0.16
CUX1-213ENST00000549414 DAZAP1Q96EP5 407 aaKnown RBP14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms