RNA–Protein interactions for RNA: ENST00000548420.1

PTCH1-217, Transcript of patched 1, humanhuman

TSL 5

Gene PTCH1, Length 553 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-217ENST00000548420 LINC00482Q8N8I6 264 aa11.16□□□□□ -0.62
PTCH1-217ENST00000548420 PIFOQ8TCI5 191 aa11.16□□□□□ -0.62
PTCH1-217ENST00000548420 GATAD1Q8WUU5 269 aa11.16□□□□□ -0.62
PTCH1-217ENST00000548420 PHYHIPQ92561 330 aa11.16□□□□□ -0.62
PTCH1-217ENST00000548420 MRPS24Q96EL2 167 aaKnown RBP11.16□□□□□ -0.62
PTCH1-217ENST00000548420 UQCC2Q9BRT2 126 aa11.16□□□□□ -0.62
PTCH1-217ENST00000548420 WNT10AQ9GZT5 417 aa11.16□□□□□ -0.62
PTCH1-217ENST00000548420 ZNF581Q9P0T4 197 aa11.16□□□□□ -0.62
PTCH1-217ENST00000548420 TBL2Q9Y4P3 447 aaKnown RBP11.16□□□□□ -0.62
PTCH1-217ENST00000548420 SESN1Q9Y6P5 492 aa11.16□□□□□ -0.62
PTCH1-217ENST00000548420 TRGV10A0A0A0MS01 117 aa11.15□□□□□ -0.62
PTCH1-217ENST00000548420 A0A1W2PP11 408 aa11.15□□□□□ -0.62
PTCH1-217ENST00000548420 VGLL3A8MV65 326 aa11.15□□□□□ -0.62
PTCH1-217ENST00000548420 GEMIN2O14893 280 aaKnown RBP11.15□□□□□ -0.62
PTCH1-217ENST00000548420 MRPS14O60783 128 aaKnown RBP11.15□□□□□ -0.62
PTCH1-217ENST00000548420 JTBO76095 146 aa11.15□□□□□ -0.62
PTCH1-217ENST00000548420 PAHP00439 452 aa11.15□□□□□ -0.62
PTCH1-217ENST00000548420 PF4P02776 101 aa11.15□□□□□ -0.62
PTCH1-217ENST00000548420 CSTBP04080 98 aaKnown RBP11.15□□□□□ -0.62
PTCH1-217ENST00000548420 UCHL1P09936 223 aa11.15□□□□□ -0.62
PTCH1-217ENST00000548420 GTF2F2P13984 249 aa11.15□□□□□ -0.62
PTCH1-217ENST00000548420 SRMP19623 302 aa11.15□□□□□ -0.62
PTCH1-217ENST00000548420 COX7A1P24310 79 aa11.15□□□□□ -0.62
PTCH1-217ENST00000548420 TBCEQ15813 527 aaPredicted RBP11.15□□□□□ -0.62
PTCH1-217ENST00000548420 MPV17LQ2QL34 196 aa11.15□□□□□ -0.62
PTCH1-217ENST00000548420 PAN3Q58A45 887 aaKnown RBP11.15□□□□□ -0.62
PTCH1-217ENST00000548420 FAM27D1Q5T7N8 215 aa11.15□□□□□ -0.62
PTCH1-217ENST00000548420 RSBN1Q5VWQ0 802 aaPredicted RBP11.15□□□□□ -0.62
PTCH1-217ENST00000548420 LIPKQ5VXJ0 399 aa11.15□□□□□ -0.62
PTCH1-217ENST00000548420 LHFPL4Q7Z7J7 247 aa11.15□□□□□ -0.62
PTCH1-217ENST00000548420 OR4D6Q8NGJ1 314 aa11.15□□□□□ -0.62
PTCH1-217ENST00000548420 DDB2Q92466 427 aa11.15□□□□□ -0.62
PTCH1-217ENST00000548420 UFD1Q92890 307 aa11.15□□□□□ -0.62
PTCH1-217ENST00000548420 MUL1Q969V5 352 aa11.15□□□□□ -0.62
PTCH1-217ENST00000548420 MALSU1Q96EH3 234 aa11.15□□□□□ -0.62
PTCH1-217ENST00000548420 S100A13Q99584 98 aa11.15□□□□□ -0.62
PTCH1-217ENST00000548420 MGLLQ99685 303 aa11.15□□□□□ -0.62
PTCH1-217ENST00000548420 TMED9Q9BVK6 235 aa11.15□□□□□ -0.62
PTCH1-217ENST00000548420 BARHL1Q9BZE3 327 aa11.15□□□□□ -0.62
PTCH1-217ENST00000548420 TMEM133Q9H2Q1 129 aa11.15□□□□□ -0.62
PTCH1-217ENST00000548420 GAL3ST2Q9H3Q3 398 aa11.15□□□□□ -0.62
PTCH1-217ENST00000548420 OR6C3Q9NZP0 311 aa11.15□□□□□ -0.62
PTCH1-217ENST00000548420 BLOC1S6Q9UL45 172 aa11.15□□□□□ -0.62
PTCH1-217ENST00000548420 MRPS28Q9Y2Q9 187 aaKnown RBP11.15□□□□□ -0.62
PTCH1-217ENST00000548420 A0A087X0M5 115 aa11.14□□□□□ -0.63
PTCH1-217ENST00000548420 IGHV2-26A0A0B4J1V2 119 aa11.14□□□□□ -0.63
PTCH1-217ENST00000548420 A0A1B0GX30 115 aa11.14□□□□□ -0.63
PTCH1-217ENST00000548420 ZNF729A6NN14 1252 aaPredicted RBP11.14□□□□□ -0.63
PTCH1-217ENST00000548420 SERPINA2P20848 420 aa11.14□□□□□ -0.63
PTCH1-217ENST00000548420 CHATP28329 748 aa11.14□□□□□ -0.63
PTCH1-217ENST00000548420 CD34P28906 385 aa11.14□□□□□ -0.63
PTCH1-217ENST00000548420 MAP2K4P45985 399 aa11.14□□□□□ -0.63
PTCH1-217ENST00000548420 LGALS4P56470 323 aa11.14□□□□□ -0.63
PTCH1-217ENST00000548420 ATXN7L3Q14CW9 347 aaPredicted RBP11.14□□□□□ -0.63
PTCH1-217ENST00000548420 TRAM1Q15629 374 aa11.14□□□□□ -0.63
PTCH1-217ENST00000548420 C17orf58Q2M2W7 97 aa11.14□□□□□ -0.63
PTCH1-217ENST00000548420 SLC22A6Q4U2R8 563 aa11.14□□□□□ -0.63
PTCH1-217ENST00000548420 C1orf100Q5SVJ3 147 aa11.14□□□□□ -0.63
PTCH1-217ENST00000548420 GLIPR1L1Q6UWM5 242 aa11.14□□□□□ -0.63
PTCH1-217ENST00000548420 CEACAM19Q7Z692 300 aa11.14□□□□□ -0.63
PTCH1-217ENST00000548420 DYNAPQ8N1N2 210 aa11.14□□□□□ -0.63
PTCH1-217ENST00000548420 JAGN1Q8N5M9 183 aa11.14□□□□□ -0.63
PTCH1-217ENST00000548420 SUMF2Q8NBJ7 301 aa11.14□□□□□ -0.63
PTCH1-217ENST00000548420 PLPPR1Q8TBJ4 325 aa11.14□□□□□ -0.63
PTCH1-217ENST00000548420 DPF1Q92782 380 aa11.14□□□□□ -0.63
PTCH1-217ENST00000548420 FOXRED1Q96CU9 486 aaPredicted RBP11.14□□□□□ -0.63
PTCH1-217ENST00000548420 PRR25Q96S07 402 aa11.14□□□□□ -0.63
PTCH1-217ENST00000548420 SSX3Q99909 188 aa11.14□□□□□ -0.63
PTCH1-217ENST00000548420 DPCDQ9BVM2 203 aaPredicted RBP11.14□□□□□ -0.63
PTCH1-217ENST00000548420 YTHDF1Q9BYJ9 559 aaKnown RBP11.14□□□□□ -0.63
PTCH1-217ENST00000548420 CCDC90BQ9GZT6 254 aa11.14□□□□□ -0.63
PTCH1-217ENST00000548420 RCC2Q9P258 522 aaKnown RBP11.14□□□□□ -0.63
PTCH1-217ENST00000548420 GHRLQ9UBU3 117 aa11.14□□□□□ -0.63
PTCH1-217ENST00000548420 MUC4Q99102 2169 aa11.14□□□□□ -0.63
PTCH1-217ENST00000548420 KBTBD11-OT1A0A1B0GTJ5 212 aa11.13□□□□□ -0.63
PTCH1-217ENST00000548420 FAM90A10PA6NDY2 464 aa11.13□□□□□ -0.63
PTCH1-217ENST00000548420 FAM90A18PA6NE21 464 aa11.13□□□□□ -0.63
PTCH1-217ENST00000548420 FAM90A16PA6NEW6 464 aa11.13□□□□□ -0.63
PTCH1-217ENST00000548420 FAM90A20PA6NIJ5 464 aa11.13□□□□□ -0.63
PTCH1-217ENST00000548420 FAM90A7PA6NKC0 464 aa11.13□□□□□ -0.63
PTCH1-217ENST00000548420 FAM90A22PA8MWA6 464 aa11.13□□□□□ -0.63
PTCH1-217ENST00000548420 FAM90A12PA8MX19 464 aa11.13□□□□□ -0.63
PTCH1-217ENST00000548420 FAM90A5PA8MXJ8 464 aa11.13□□□□□ -0.63
PTCH1-217ENST00000548420 FAM90A23PA8MXZ1 464 aa11.13□□□□□ -0.63
PTCH1-217ENST00000548420 NPIPB11E5RHQ5 1161 aa11.13□□□□□ -0.63
PTCH1-217ENST00000548420 OR7C1O76099 320 aaPredicted RBP11.13□□□□□ -0.63
PTCH1-217ENST00000548420 IGLV1-47P01700 117 aa11.13□□□□□ -0.63
PTCH1-217ENST00000548420 ARG1P05089 322 aa11.13□□□□□ -0.63
PTCH1-217ENST00000548420 FAM90A15PP0C7V4 464 aa11.13□□□□□ -0.63
PTCH1-217ENST00000548420 FAM90A13PP0C7W8 464 aa11.13□□□□□ -0.63
PTCH1-217ENST00000548420 FAM90A14PP0C7W9 464 aa11.13□□□□□ -0.63
PTCH1-217ENST00000548420 FAM90A24PP0C7X0 464 aa11.13□□□□□ -0.63
PTCH1-217ENST00000548420 CDK2P24941 298 aa11.13□□□□□ -0.63
PTCH1-217ENST00000548420 PSMA1P25786 263 aaKnown RBP11.13□□□□□ -0.63
PTCH1-217ENST00000548420 GDNFP39905 211 aa11.13□□□□□ -0.63
PTCH1-217ENST00000548420 GABARAPL2P60520 117 aa11.13□□□□□ -0.63
PTCH1-217ENST00000548420 DGCR2P98153 550 aa11.13□□□□□ -0.63
PTCH1-217ENST00000548420 LRRC75BQ2VPJ9 315 aa11.13□□□□□ -0.63
PTCH1-217ENST00000548420 MINOS1Q5TGZ0 78 aa11.13□□□□□ -0.63
PTCH1-217ENST00000548420 OR52W1Q6IF63 320 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms