RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 AWAT1Q58HT5 328 aa13.55□□□□□ -0.24
CUX1-211ENST00000546411 NUFIP2Q7Z417 695 aaKnown RBP13.55□□□□□ -0.24
CUX1-211ENST00000546411 ZNF429Q86V71 674 aa13.55□□□□□ -0.24
CUX1-211ENST00000546411 CALHM1Q8IU99 346 aa13.55□□□□□ -0.24
CUX1-211ENST00000546411 PINX1Q96BK5 328 aaKnown RBP13.55□□□□□ -0.24
CUX1-211ENST00000546411 SLC35B3Q9H1N7 401 aa13.55□□□□□ -0.24
CUX1-211ENST00000546411 TMEM265A0A087WTH1 108 aa13.55□□□□□ -0.24
CUX1-211ENST00000546411 MFSD2BA6NFX1 497 aa13.55□□□□□ -0.24
CUX1-211ENST00000546411 HTD2P86397 168 aa13.55□□□□□ -0.24
CUX1-211ENST00000546411 SAT2Q96F10 170 aaPredicted RBP13.55□□□□□ -0.24
CUX1-211ENST00000546411 IER2Q9BTL4 223 aa13.55□□□□□ -0.24
CUX1-211ENST00000546411 A0A1W2PPQ1 181 aa13.54□□□□□ -0.24
CUX1-211ENST00000546411 RPL36A-HNRNPH2H7BZ11 118 aa13.54□□□□□ -0.24
CUX1-211ENST00000546411 PMELP40967 661 aa13.54□□□□□ -0.24
CUX1-211ENST00000546411 OR52M1Q8NGK5 317 aa13.54□□□□□ -0.24
CUX1-211ENST00000546411 NANPQ8TBE9 248 aa13.54□□□□□ -0.24
CUX1-211ENST00000546411 PLXNA2O75051 1894 aa13.54□□□□□ -0.24
CUX1-211ENST00000546411 hCG_1809904A0A1W2PP81 198 aa13.54□□□□□ -0.24
CUX1-211ENST00000546411 A0A1W2PR64 198 aa13.54□□□□□ -0.24
CUX1-211ENST00000546411 A0A1W2PRV1 198 aa13.54□□□□□ -0.24
CUX1-211ENST00000546411 MPV17LQ2QL34 196 aa13.54□□□□□ -0.24
CUX1-211ENST00000546411 TIPARPQ7Z3E1 657 aaKnown RBP13.54□□□□□ -0.24
CUX1-211ENST00000546411 MRPL41Q8IXM3 137 aaKnown RBP13.54□□□□□ -0.24
CUX1-211ENST00000546411 Q8IYB0 196 aa13.54□□□□□ -0.24
CUX1-211ENST00000546411 SSTP61278 116 aa13.54□□□□□ -0.24
CUX1-211ENST00000546411 SLC38A11Q08AI6 406 aa13.54□□□□□ -0.24
CUX1-211ENST00000546411 TRAV14DV4A0A0A6YYC5 116 aa13.53□□□□□ -0.24
CUX1-211ENST00000546411 J3QT63 122 aa13.53□□□□□ -0.24
CUX1-211ENST00000546411 SYNGR2O43760 224 aa13.53□□□□□ -0.24
CUX1-211ENST00000546411 SLC25A6P12236 298 aa13.53□□□□□ -0.24
CUX1-211ENST00000546411 ATP6V0CP27449 155 aa13.53□□□□□ -0.24
CUX1-211ENST00000546411 EIF2S3P41091 472 aaKnown RBP13.53□□□□□ -0.24
CUX1-211ENST00000546411 LYG1Q8N1E2 194 aa13.53□□□□□ -0.24
CUX1-211ENST00000546411 EDARADDQ8WWZ3 215 aa13.53□□□□□ -0.24
CUX1-211ENST00000546411 C22orf15Q8WYQ4 148 aa13.53□□□□□ -0.24
CUX1-211ENST00000546411 RANBP2P49792 3224 aaKnown RBP13.53□□□□□ -0.24
CUX1-211ENST00000546411 OR5H1A6NKK0 313 aa13.53□□□□□ -0.24
CUX1-211ENST00000546411 A8MXE2 369 aa13.53□□□□□ -0.24
CUX1-211ENST00000546411 MSI2Q96DH6 328 aaKnown RBP13.53□□□□□ -0.24
CUX1-211ENST00000546411 ZNF552Q9H707 407 aaPredicted RBP13.53□□□□□ -0.24
CUX1-211ENST00000546411 PATZ1Q9HBE1 687 aaKnown RBP13.53□□□□□ -0.24
CUX1-211ENST00000546411 ZMAT5Q9UDW3 170 aaKnown RBP13.53□□□□□ -0.24
CUX1-211ENST00000546411 PCNX2A6NKB5 2137 aa13.53□□□□□ -0.24
CUX1-211ENST00000546411 A0A1W2PPH5 198 aa13.53□□□□□ -0.24
CUX1-211ENST00000546411 KLF7O75840 302 aaPredicted RBP13.53□□□□□ -0.24
CUX1-211ENST00000546411 ZNF528Q3MIS6 628 aa13.53□□□□□ -0.24
CUX1-211ENST00000546411 LY6G6FQ5SQ64 297 aa13.53□□□□□ -0.24
CUX1-211ENST00000546411 NTNG2Q96CW9 530 aa13.53□□□□□ -0.24
CUX1-211ENST00000546411 IL36RNQ9UBH0 155 aa13.53□□□□□ -0.24
CUX1-211ENST00000546411 OR2W1Q9Y3N9 320 aa13.53□□□□□ -0.24
CUX1-211ENST00000546411 PLXNB3Q9ULL4 1909 aa13.52□□□□□ -0.24
CUX1-211ENST00000546411 MKRN2OSH3BPM6 223 aa13.52□□□□□ -0.24
CUX1-211ENST00000546411 ACTL6AO96019 429 aa13.52□□□□□ -0.24
CUX1-211ENST00000546411 MGST1P10620 155 aaKnown RBP13.52□□□□□ -0.24
CUX1-211ENST00000546411 CEACAM21Q3KPI0 293 aa13.52□□□□□ -0.24
CUX1-211ENST00000546411 C10orf128Q5T292 105 aa13.52□□□□□ -0.24
CUX1-211ENST00000546411 ASPHD2Q6ICH7 369 aa13.52□□□□□ -0.24
CUX1-211ENST00000546411 RAB40CQ96S21 281 aa13.52□□□□□ -0.24
CUX1-211ENST00000546411 OSGIN2Q9Y236 505 aa13.52□□□□□ -0.24
CUX1-211ENST00000546411 C7orf77A4D0Y5 90 aa13.52□□□□□ -0.25
CUX1-211ENST00000546411 LRRC30A6NM36 301 aa13.52□□□□□ -0.25
CUX1-211ENST00000546411 PPP5D1E7EU14 171 aa13.52□□□□□ -0.25
CUX1-211ENST00000546411 HAND1O96004 215 aa13.52□□□□□ -0.25
CUX1-211ENST00000546411 COX5AP20674 150 aa13.52□□□□□ -0.25
CUX1-211ENST00000546411 PPP1CCP36873 323 aaKnown RBP13.52□□□□□ -0.25
CUX1-211ENST00000546411 SSX2Q16385 188 aa13.52□□□□□ -0.25
CUX1-211ENST00000546411 TCEAL7Q9BRU2 100 aa13.52□□□□□ -0.25
CUX1-211ENST00000546411 SLC2A8Q9NY64 477 aa13.52□□□□□ -0.25
CUX1-211ENST00000546411 MDFIC2A0A1B0GVS7 189 aa13.52□□□□□ -0.25
CUX1-211ENST00000546411 A0A1W2PPE2 198 aa13.52□□□□□ -0.25
CUX1-211ENST00000546411 FOSL1P15407 271 aa13.52□□□□□ -0.25
CUX1-211ENST00000546411 NPBWR1P48145 328 aa13.52□□□□□ -0.25
CUX1-211ENST00000546411 RIPPLY2Q5TAB7 128 aa13.52□□□□□ -0.25
CUX1-211ENST00000546411 ATRAIDQ6UW56 229 aa13.52□□□□□ -0.25
CUX1-211ENST00000546411 C1orf87Q8N0U7 546 aa13.52□□□□□ -0.25
CUX1-211ENST00000546411 RNF222A6NCQ9 220 aa13.51□□□□□ -0.25
CUX1-211ENST00000546411 G6PCP35575 357 aa13.51□□□□□ -0.25
CUX1-211ENST00000546411 P2RY1P47900 373 aa13.51□□□□□ -0.25
CUX1-211ENST00000546411 NRIP2Q9BQI9 281 aa13.51□□□□□ -0.25
CUX1-211ENST00000546411 ACTR3CQ9C0K3 210 aaPredicted RBP13.51□□□□□ -0.25
CUX1-211ENST00000546411 A0A1W2PPE3 182 aa13.51□□□□□ -0.25
CUX1-211ENST00000546411 MAP1LC3B2A6NCE7 125 aa13.51□□□□□ -0.25
CUX1-211ENST00000546411 ZNF273Q14593 569 aa13.51□□□□□ -0.25
CUX1-211ENST00000546411 MAP1LC3BQ9GZQ8 125 aa13.51□□□□□ -0.25
CUX1-211ENST00000546411 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.51□□□□□ -0.25
CUX1-211ENST00000546411 DEPPQ9NTK1 212 aa13.51□□□□□ -0.25
CUX1-211ENST00000546411 IGHV3OR15-7A0A075B7D8 119 aa13.51□□□□□ -0.25
CUX1-211ENST00000546411 IGKV1D-8A0A087WSZ0 117 aa13.51□□□□□ -0.25
CUX1-211ENST00000546411 OR7C2O60412 319 aa13.51□□□□□ -0.25
CUX1-211ENST00000546411 KCNJ3P48549 501 aa13.51□□□□□ -0.25
CUX1-211ENST00000546411 FGF12P61328 243 aa13.51□□□□□ -0.25
CUX1-211ENST00000546411 RBPJQ06330 500 aa13.51□□□□□ -0.25
CUX1-211ENST00000546411 IGFBP7Q16270 282 aa13.51□□□□□ -0.25
CUX1-211ENST00000546411 TMEM41BQ5BJD5 291 aa13.51□□□□□ -0.25
CUX1-211ENST00000546411 KCNIP4Q6PIL6 250 aa13.51□□□□□ -0.25
CUX1-211ENST00000546411 TMEM105Q8N8V8 129 aa13.51□□□□□ -0.25
CUX1-211ENST00000546411 LYZL4Q96KX0 146 aa13.51□□□□□ -0.25
CUX1-211ENST00000546411 SAMD10Q9BYL1 202 aa13.51□□□□□ -0.25
CUX1-211ENST00000546411 NPTNQ9Y639 398 aa13.51□□□□□ -0.25
CUX1-211ENST00000546411 A0A0A6YYD4 124 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms