RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 ABCD4O14678 606 aa12.11□□□□□ -0.47
VPS33A-209ENST00000544349 CDIPTO14735 213 aa12.11□□□□□ -0.47
VPS33A-209ENST00000544349 SCGB1D2O95969 90 aa12.11□□□□□ -0.47
VPS33A-209ENST00000544349 PET100P0DJ07 73 aa12.11□□□□□ -0.47
VPS33A-209ENST00000544349 CD40P25942 277 aa12.11□□□□□ -0.47
VPS33A-209ENST00000544349 FCGR2CP31995 323 aa12.11□□□□□ -0.47
VPS33A-209ENST00000544349 LY6DQ14210 128 aa12.11□□□□□ -0.47
VPS33A-209ENST00000544349 TMEM187Q14656 261 aa12.11□□□□□ -0.47
VPS33A-209ENST00000544349 DHRS11Q6UWP2 260 aa12.11□□□□□ -0.47
VPS33A-209ENST00000544349 LINC00596Q86U02 117 aa12.11□□□□□ -0.47
VPS33A-209ENST00000544349 CXXC4Q9H2H0 198 aa12.11□□□□□ -0.47
VPS33A-209ENST00000544349 TMEM231Q9H6L2 316 aa12.11□□□□□ -0.47
VPS33A-209ENST00000544349 ZNF442Q9H7R0 627 aa12.11□□□□□ -0.47
VPS33A-209ENST00000544349 NAA60Q9H7X0 242 aa12.11□□□□□ -0.47
VPS33A-209ENST00000544349 MSL2Q9HCI7 577 aa12.11□□□□□ -0.47
VPS33A-209ENST00000544349 PLA2G2EQ9NZK7 142 aa12.11□□□□□ -0.47
VPS33A-209ENST00000544349 RCC2Q9P258 522 aaKnown RBP12.11□□□□□ -0.47
VPS33A-209ENST00000544349 DNAJB11Q9UBS4 358 aa12.11□□□□□ -0.47
VPS33A-209ENST00000544349 GLS2Q9UI32 602 aa12.11□□□□□ -0.47
VPS33A-209ENST00000544349 POLDIP2Q9Y2S7 368 aa12.11□□□□□ -0.47
VPS33A-209ENST00000544349 LSM5Q9Y4Y9 91 aaKnown RBP12.11□□□□□ -0.47
VPS33A-209ENST00000544349 RP1L1Q8IWN7 2480 aaPredicted RBP12.11□□□□□ -0.47
VPS33A-209ENST00000544349 TLN1Q9Y490 2541 aaKnown RBP12.11□□□□□ -0.47
VPS33A-209ENST00000544349 A0A1B0GWJ7 208 aa12.11□□□□□ -0.47
VPS33A-209ENST00000544349 ATP6V1G2-DDX39BF2Z307 99 aa12.11□□□□□ -0.47
VPS33A-209ENST00000544349 TPD52L2O43399 206 aaKnown RBP12.11□□□□□ -0.47
VPS33A-209ENST00000544349 GRPP07492 148 aa12.11□□□□□ -0.47
VPS33A-209ENST00000544349 IL13RA2Q14627 380 aa12.11□□□□□ -0.47
VPS33A-209ENST00000544349 LRP11Q86VZ4 500 aa12.11□□□□□ -0.47
VPS33A-209ENST00000544349 RNF141Q8WVD5 230 aa12.11□□□□□ -0.47
VPS33A-209ENST00000544349 RTN4IP1Q8WWV3 396 aaPredicted RBP12.11□□□□□ -0.47
VPS33A-209ENST00000544349 SLC2A9Q9NRM0 540 aa12.11□□□□□ -0.47
VPS33A-209ENST00000544349 FBXL17Q9UF56 701 aa12.11□□□□□ -0.47
VPS33A-209ENST00000544349 RAB19A4D1S5 217 aa12.1□□□□□ -0.47
VPS33A-209ENST00000544349 TMEM8BA6NDV4 472 aa12.1□□□□□ -0.47
VPS33A-209ENST00000544349 DEDDO75618 318 aa12.1□□□□□ -0.47
VPS33A-209ENST00000544349 DUSP1P28562 367 aa12.1□□□□□ -0.47
VPS33A-209ENST00000544349 ERVK11-1P61568 191 aa12.1□□□□□ -0.47
VPS33A-209ENST00000544349 GUCA2BQ16661 112 aa12.1□□□□□ -0.47
VPS33A-209ENST00000544349 CLEC9AQ6UXN8 241 aa12.1□□□□□ -0.47
VPS33A-209ENST00000544349 Q8IYB0 196 aa12.1□□□□□ -0.47
VPS33A-209ENST00000544349 ARL11Q969Q4 196 aa12.1□□□□□ -0.47
VPS33A-209ENST00000544349 BSCL2Q96G97 398 aaPredicted RBP12.1□□□□□ -0.47
VPS33A-209ENST00000544349 SMIM3Q9BZL3 60 aa12.1□□□□□ -0.47
VPS33A-209ENST00000544349 ZNF286AQ9HBT8 521 aa12.1□□□□□ -0.47
VPS33A-209ENST00000544349 C12orf4Q9NQ89 552 aa12.1□□□□□ -0.47
VPS33A-209ENST00000544349 LPAR3Q9UBY5 353 aa12.1□□□□□ -0.47
VPS33A-209ENST00000544349 DUSP13Q9UII6 198 aa12.1□□□□□ -0.47
VPS33A-209ENST00000544349 DSPP15924 2871 aaKnown RBP12.1□□□□□ -0.47
VPS33A-209ENST00000544349 NCOR2Q9Y618 2525 aa12.1□□□□□ -0.47
VPS33A-209ENST00000544349 IGHV3-64DA0A0J9YX35 117 aa12.1□□□□□ -0.47
VPS33A-209ENST00000544349 TMEM218A2RU14 115 aa12.1□□□□□ -0.47
VPS33A-209ENST00000544349 ZNF705EA8MWA4 302 aaPredicted RBP12.1□□□□□ -0.47
VPS33A-209ENST00000544349 C3orf80F5H4A9 247 aa12.1□□□□□ -0.47
VPS33A-209ENST00000544349 IGHV3-13P01766 116 aa12.1□□□□□ -0.47
VPS33A-209ENST00000544349 THBDP07204 575 aa12.1□□□□□ -0.47
VPS33A-209ENST00000544349 ACAA1P09110 424 aaPredicted RBP12.1□□□□□ -0.47
VPS33A-209ENST00000544349 PGA5P0DJD9 388 aa12.1□□□□□ -0.47
VPS33A-209ENST00000544349 AADACP22760 399 aa12.1□□□□□ -0.47
VPS33A-209ENST00000544349 RPL12P30050 165 aaKnown RBP12.1□□□□□ -0.47
VPS33A-209ENST00000544349 ABCA11PQ4W5N1 156 aa12.1□□□□□ -0.47
VPS33A-209ENST00000544349 IGSF11Q5DX21 431 aa12.1□□□□□ -0.47
VPS33A-209ENST00000544349 TMEM268Q5VZI3 342 aa12.1□□□□□ -0.47
VPS33A-209ENST00000544349 UQCC3Q6UW78 93 aa12.1□□□□□ -0.47
VPS33A-209ENST00000544349 SSX8Q7RTT4 187 aa12.1□□□□□ -0.47
VPS33A-209ENST00000544349 LYZL2Q7Z4W2 148 aa12.1□□□□□ -0.47
VPS33A-209ENST00000544349 C11orf53Q8IXP5 236 aa12.1□□□□□ -0.47
VPS33A-209ENST00000544349 KDF1Q8NAX2 398 aaPredicted RBP12.1□□□□□ -0.47
VPS33A-209ENST00000544349 TMEM171Q8WVE6 324 aa12.1□□□□□ -0.47
VPS33A-209ENST00000544349 NKX6-2Q9C056 277 aaPredicted RBP12.1□□□□□ -0.47
VPS33A-209ENST00000544349 MBPP02686 304 aaPredicted RBP12.09□□□□□ -0.47
VPS33A-209ENST00000544349 LPAR6P43657 344 aa12.09□□□□□ -0.47
VPS33A-209ENST00000544349 VHLLQ6RSH7 139 aa12.09□□□□□ -0.47
VPS33A-209ENST00000544349 TMEM108Q6UXF1 575 aa12.09□□□□□ -0.47
VPS33A-209ENST00000544349 WFDC8Q8IUA0 241 aa12.09□□□□□ -0.47
VPS33A-209ENST00000544349 MOB3AQ96BX8 217 aa12.09□□□□□ -0.47
VPS33A-209ENST00000544349 NRIP2Q9BQI9 281 aa12.09□□□□□ -0.47
VPS33A-209ENST00000544349 ZC4H2Q9NQZ6 224 aa12.09□□□□□ -0.47
VPS33A-209ENST00000544349 ZDHHC8Q9ULC8 765 aa12.09□□□□□ -0.47
VPS33A-209ENST00000544349 IGLV3-9A0A075B6K5 115 aa12.08□□□□□ -0.47
VPS33A-209ENST00000544349 K7EPK0 472 aa12.08□□□□□ -0.47
VPS33A-209ENST00000544349 CCL21O00585 134 aa12.08□□□□□ -0.47
VPS33A-209ENST00000544349 ATG12O94817 140 aa12.08□□□□□ -0.47
VPS33A-209ENST00000544349 DIRAS3O95661 229 aa12.08□□□□□ -0.47
VPS33A-209ENST00000544349 PTAFRP25105 342 aa12.08□□□□□ -0.47
VPS33A-209ENST00000544349 KLF3P57682 345 aaPredicted RBP12.08□□□□□ -0.47
VPS33A-209ENST00000544349 RPS23P62266 143 aaKnown RBP12.08□□□□□ -0.47
VPS33A-209ENST00000544349 PUSL1Q8N0Z8 303 aaKnown RBP12.08□□□□□ -0.47
VPS33A-209ENST00000544349 FAM71E2Q8N5Q1 922 aa12.08□□□□□ -0.47
VPS33A-209ENST00000544349 ERGIC1Q969X5 290 aa12.08□□□□□ -0.47
VPS33A-209ENST00000544349 GALNT14Q96FL9 552 aa12.08□□□□□ -0.47
VPS33A-209ENST00000544349 TLNRD1Q9H1K6 362 aa12.08□□□□□ -0.47
VPS33A-209ENST00000544349 TAF9BQ9HBM6 251 aa12.08□□□□□ -0.47
VPS33A-209ENST00000544349 SPACA1Q9HBV2 294 aa12.08□□□□□ -0.47
VPS33A-209ENST00000544349 FAM96BQ9Y3D0 163 aa12.08□□□□□ -0.47
VPS33A-209ENST00000544349 PCNX1Q96RV3 2341 aa12.08□□□□□ -0.48
VPS33A-209ENST00000544349 CADP27708 2225 aa12.08□□□□□ -0.48
VPS33A-209ENST00000544349 DPRXA6NFQ7 191 aa12.08□□□□□ -0.48
VPS33A-209ENST00000544349 F12P00748 615 aaPredicted RBP12.08□□□□□ -0.48
VPS33A-209ENST00000544349 PRAMEF6Q5VXH4 476 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms