RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, human

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS33A-208	ENST00000543633	NOVA1	P51513	510 aa	Known RBP	11.76	□□□□□ -0.53
VPS33A-208	ENST00000543633	RND2	P52198	227 aa		11.76	□□□□□ -0.53
VPS33A-208	ENST00000543633	HLA-DRB3	P79483	266 aa		11.76	□□□□□ -0.53
VPS33A-208	ENST00000543633	HERPUD1	Q15011	391 aa		11.76	□□□□□ -0.53
VPS33A-208	ENST00000543633	ZNF674	Q2M3X9	581 aa		11.76	□□□□□ -0.53
VPS33A-208	ENST00000543633	CISD1	Q9NZ45	108 aa	Known RBP	11.76	□□□□□ -0.53
VPS33A-208	ENST00000543633	DOK5	Q9P104	306 aa		11.76	□□□□□ -0.53
VPS33A-208	ENST00000543633	TAAR3P	Q9P1P4	343 aa		11.76	□□□□□ -0.53
VPS33A-208	ENST00000543633	MMP24	Q9Y5R2	645 aa		11.76	□□□□□ -0.53
VPS33A-208	ENST00000543633	CACNA1E	Q15878	2313 aa		11.76	□□□□□ -0.53
VPS33A-208	ENST00000543633	IGKV1D-13	A0A0B4J2D9	117 aa		11.76	□□□□□ -0.53
VPS33A-208	ENST00000543633	ZNF587B	E7ETH6	402 aa		11.76	□□□□□ -0.53
VPS33A-208	ENST00000543633		G3V3Y1	287 aa		11.76	□□□□□ -0.53
VPS33A-208	ENST00000543633		M0R296	226 aa		11.76	□□□□□ -0.53
VPS33A-208	ENST00000543633	CHST1	O43916	411 aa		11.76	□□□□□ -0.53
VPS33A-208	ENST00000543633	CST7	O76096	145 aa		11.76	□□□□□ -0.53
VPS33A-208	ENST00000543633	PATE4	P0C8F1	98 aa		11.76	□□□□□ -0.53
VPS33A-208	ENST00000543633	IGKV1-13	P0DP09	117 aa		11.76	□□□□□ -0.53
VPS33A-208	ENST00000543633	F2R	P25116	425 aa		11.76	□□□□□ -0.53
VPS33A-208	ENST00000543633	PAX9	P55771	341 aa		11.76	□□□□□ -0.53
VPS33A-208	ENST00000543633	PRDX4	Q13162	271 aa		11.76	□□□□□ -0.53
VPS33A-208	ENST00000543633	PMS2P11	Q13670	270 aa		11.76	□□□□□ -0.53
VPS33A-208	ENST00000543633	CEACAM21	Q3KPI0	293 aa		11.76	□□□□□ -0.53
VPS33A-208	ENST00000543633	LYSMD4	Q5XG99	296 aa		11.76	□□□□□ -0.53
VPS33A-208	ENST00000543633	OR10D3	Q8NH80	312 aa		11.76	□□□□□ -0.53
VPS33A-208	ENST00000543633	FGFBP3	Q8TAT2	258 aa		11.76	□□□□□ -0.53
VPS33A-208	ENST00000543633	LSM10	Q969L4	123 aa	Known RBP	11.76	□□□□□ -0.53
VPS33A-208	ENST00000543633	P2RX4	Q99571	388 aa		11.76	□□□□□ -0.53
VPS33A-208	ENST00000543633	CABLES2	Q9BTV7	478 aa		11.76	□□□□□ -0.53
VPS33A-208	ENST00000543633	MAGT1	Q9H0U3	335 aa		11.76	□□□□□ -0.53
VPS33A-208	ENST00000543633	SPEG	Q15772	3267 aa		11.75	□□□□□ -0.53
VPS33A-208	ENST00000543633	MED12	Q93074	2177 aa		11.75	□□□□□ -0.53
VPS33A-208	ENST00000543633	IGKV3D-15	A0A087WSY6	115 aa		11.75	□□□□□ -0.53
VPS33A-208	ENST00000543633	NPIPB11	E5RHQ5	1161 aa		11.75	□□□□□ -0.53
VPS33A-208	ENST00000543633	NDUFS6	O75380	124 aa	Known RBP	11.75	□□□□□ -0.53
VPS33A-208	ENST00000543633	PGLYRP1	O75594	196 aa	Predicted RBP	11.75	□□□□□ -0.53
VPS33A-208	ENST00000543633	SCT	P09683	121 aa		11.75	□□□□□ -0.53
VPS33A-208	ENST00000543633	EPHA1	P21709	976 aa		11.75	□□□□□ -0.53
VPS33A-208	ENST00000543633	PRSS12	P56730	875 aa		11.75	□□□□□ -0.53
VPS33A-208	ENST00000543633	ZNF154	Q13106	437 aa		11.75	□□□□□ -0.53
VPS33A-208	ENST00000543633	ZNF880	Q6PDB4	577 aa		11.75	□□□□□ -0.53
VPS33A-208	ENST00000543633	ZDHHC23	Q8IYP9	409 aa		11.75	□□□□□ -0.53
VPS33A-208	ENST00000543633	NAXE	Q8NCW5	288 aa		11.75	□□□□□ -0.53
VPS33A-208	ENST00000543633	OR56B2P	Q8NGI1	322 aa		11.75	□□□□□ -0.53
VPS33A-208	ENST00000543633	MBD3L1	Q8WWY6	194 aa		11.75	□□□□□ -0.53
VPS33A-208	ENST00000543633	PILRB	Q9UKJ0	227 aa		11.75	□□□□□ -0.53
VPS33A-208	ENST00000543633	NOSIP	Q9Y314	301 aa	Known RBP	11.75	□□□□□ -0.53
VPS33A-208	ENST00000543633	ARID1A	O14497	2285 aa		11.74	□□□□□ -0.53
VPS33A-208	ENST00000543633	IFITM10	A6NMD0	228 aa		11.74	□□□□□ -0.53
VPS33A-208	ENST00000543633	TRAPPC2L	H3BP13	241 aa		11.74	□□□□□ -0.53
VPS33A-208	ENST00000543633	SS18L1	O75177	396 aa	Predicted RBP	11.74	□□□□□ -0.53
VPS33A-208	ENST00000543633	CXCL1	P09341	107 aa		11.74	□□□□□ -0.53
VPS33A-208	ENST00000543633	FOLR3	P41439	243 aa		11.74	□□□□□ -0.53
VPS33A-208	ENST00000543633	ERVFRD-1	P60508	538 aa		11.74	□□□□□ -0.53
VPS33A-208	ENST00000543633	RUNX1	Q01196	453 aa		11.74	□□□□□ -0.53
VPS33A-208	ENST00000543633	PDCD1	Q15116	288 aa		11.74	□□□□□ -0.53
VPS33A-208	ENST00000543633	YRDC	Q86U90	279 aa	Known RBP	11.74	□□□□□ -0.53
VPS33A-208	ENST00000543633	C1orf87	Q8N0U7	546 aa		11.74	□□□□□ -0.53
VPS33A-208	ENST00000543633	CCL28	Q9NRJ3	127 aa		11.74	□□□□□ -0.53
VPS33A-208	ENST00000543633	RFNG	Q9Y644	331 aa		11.74	□□□□□ -0.53
VPS33A-208	ENST00000543633	DMD	P11532	3685 aa		11.74	□□□□□ -0.53
VPS33A-208	ENST00000543633	LRRC3C	A6NJW4	275 aa		11.74	□□□□□ -0.53
VPS33A-208	ENST00000543633	ZNF727	A8MUV8	499 aa		11.74	□□□□□ -0.53
VPS33A-208	ENST00000543633	DEGS1	O15121	323 aa		11.74	□□□□□ -0.53
VPS33A-208	ENST00000543633	HIST1H2BK	O60814	126 aa		11.74	□□□□□ -0.53
VPS33A-208	ENST00000543633	YIF1A	O95070	293 aa		11.74	□□□□□ -0.53
VPS33A-208	ENST00000543633	CNOT4	O95628	575 aa	Known RBP	11.74	□□□□□ -0.53
VPS33A-208	ENST00000543633	CYB5R3	P00387	301 aa	Predicted RBP	11.74	□□□□□ -0.53
VPS33A-208	ENST00000543633	HIST1H2BJ	P06899	126 aa		11.74	□□□□□ -0.53
VPS33A-208	ENST00000543633	BCL2	P10415	239 aa		11.74	□□□□□ -0.53
VPS33A-208	ENST00000543633	HIST1H2BO	P23527	126 aa		11.74	□□□□□ -0.53
VPS33A-208	ENST00000543633	HIST1H2BB	P33778	126 aa		11.74	□□□□□ -0.53
VPS33A-208	ENST00000543633	NDUFA6	P56556	154 aa		11.74	□□□□□ -0.53
VPS33A-208	ENST00000543633	HIST1H2BD	P58876	126 aa		11.74	□□□□□ -0.53
VPS33A-208	ENST00000543633	HIST1H2BC	P62807	126 aa		11.74	□□□□□ -0.53
VPS33A-208	ENST00000543633	NKX6-1	P78426	367 aa	Predicted RBP	11.74	□□□□□ -0.53
VPS33A-208	ENST00000543633	HIST2H2BE	Q16778	126 aa		11.74	□□□□□ -0.53
VPS33A-208	ENST00000543633	PYY3	Q5JQD4	70 aa		11.74	□□□□□ -0.53
VPS33A-208	ENST00000543633	OR2B11	Q5JQS5	317 aa		11.74	□□□□□ -0.53
VPS33A-208	ENST00000543633	HIST2H2BF	Q5QNW6	126 aa	Predicted RBP	11.74	□□□□□ -0.53
VPS33A-208	ENST00000543633	FAM90A2P	Q658T7	463 aa		11.74	□□□□□ -0.53
VPS33A-208	ENST00000543633	OR5A2	Q8NGI9	324 aa		11.74	□□□□□ -0.53
VPS33A-208	ENST00000543633	IFI44	Q8TCB0	444 aa		11.74	□□□□□ -0.53
VPS33A-208	ENST00000543633	HIST1H2BH	Q93079	126 aa		11.74	□□□□□ -0.53
VPS33A-208	ENST00000543633	HIST1H2BN	Q99877	126 aa		11.74	□□□□□ -0.53
VPS33A-208	ENST00000543633	HIST1H2BM	Q99879	126 aa		11.74	□□□□□ -0.53
VPS33A-208	ENST00000543633	CALHM2	Q9HA72	323 aa		11.74	□□□□□ -0.53
VPS33A-208	ENST00000543633	IGKV1-6	A0A0C4DH72	117 aa		11.73	□□□□□ -0.53
VPS33A-208	ENST00000543633	KIAA1324L	A8MWY0	1029 aa	Predicted RBP	11.73	□□□□□ -0.53
VPS33A-208	ENST00000543633	PPP1R2P9	O14990	202 aa		11.73	□□□□□ -0.53
VPS33A-208	ENST00000543633	CD200	P41217	278 aa		11.73	□□□□□ -0.53
VPS33A-208	ENST00000543633	PI4KA	P42356	2102 aa		11.73	□□□□□ -0.53
VPS33A-208	ENST00000543633	SERF2	P84101	59 aa		11.73	□□□□□ -0.53
VPS33A-208	ENST00000543633	PCSK4	Q6UW60	755 aa		11.73	□□□□□ -0.53
VPS33A-208	ENST00000543633	TMEM217	Q8N7C4	229 aa		11.73	□□□□□ -0.53
VPS33A-208	ENST00000543633	CPEB3	Q8NE35	698 aa	Known RBP	11.73	□□□□□ -0.53
VPS33A-208	ENST00000543633	MRPL30	Q8TCC3	161 aa	Known RBP	11.73	□□□□□ -0.53
VPS33A-208	ENST00000543633	APOBEC3D	Q96AK3	386 aa	Predicted RBP	11.73	□□□□□ -0.53
VPS33A-208	ENST00000543633	RCC1L	Q96I51	464 aa	Known RBP	11.73	□□□□□ -0.53
VPS33A-208	ENST00000543633	CTDSP1	Q9GZU7	261 aa		11.73	□□□□□ -0.53

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