RNA–Protein interactions for RNA: ENST00000543359.5

TNFRSF1A-215, Transcript of TNF receptor superfamily member 1A, human

TSL 3

Gene TNFRSF1A, Length 627 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TNFRSF1A-215	ENST00000543359	THNSL2	Q86YJ6	484 aa		10.45	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	LYG1	Q8N1E2	194 aa		10.45	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	GAPT	Q8N292	157 aa		10.45	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	TMEM104	Q8NE00	496 aa		10.45	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	CITED2	Q99967	270 aa	Predicted RBP	10.45	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	SLC25A33	Q9BSK2	321 aa		10.45	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	CKLF	Q9UBR5	152 aa		10.45	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	DNAH9	Q9NYC9	4486 aa		10.45	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	TMEM30CP	A0ZSE6	113 aa		10.44	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	MYL12B	O14950	172 aa		10.44	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	FBXO24	O75426	580 aa		10.44	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	MAS1	P04201	325 aa		10.44	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	CD37	P11049	281 aa		10.44	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	GZMH	P20718	246 aa		10.44	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	VDAC2	P45880	294 aa	Predicted RBP	10.44	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	CD83	Q01151	205 aa		10.44	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	GPR176	Q14439	515 aa		10.44	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	RBM39	Q14498	530 aa	Known RBP	10.44	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	IRF3	Q14653	427 aa		10.44	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	TCTEX1D4	Q5JR98	221 aa		10.44	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	SIGIRR	Q6IA17	410 aa		10.44	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	CCDC144NL	Q6NUI1	221 aa		10.44	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	JAGN1	Q8N5M9	183 aa		10.44	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	LINC00311	Q8N616	119 aa		10.44	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	CCDC107	Q8WV48	283 aa		10.44	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	MRPS24	Q96EL2	167 aa	Known RBP	10.44	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	S100A13	Q99584	98 aa		10.44	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	PCDHB16	Q9NRJ7	776 aa		10.44	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	ERGIC3	Q9Y282	383 aa		10.44	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	MRPS28	Q9Y2Q9	187 aa	Known RBP	10.44	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359		A0A1W2PPE3	182 aa		10.43	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	SH2D7	A6NKC9	451 aa	Predicted RBP	10.43	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	SC5D	O75845	299 aa		10.43	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	AQP4	P55087	323 aa		10.43	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	MADCAM1	Q13477	382 aa		10.43	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	LTC4S	Q16873	150 aa		10.43	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	ABCA11P	Q4W5N1	156 aa		10.43	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	ATAD3C	Q5T2N8	411 aa		10.43	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	KPRP	Q5T749	579 aa	Predicted RBP	10.43	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	FAM27D1	Q5T7N8	215 aa		10.43	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	LRRTM1	Q86UE6	522 aa		10.43	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	DRAM1	Q8N682	238 aa		10.43	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	C8orf31	Q8N9H6	132 aa		10.43	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	OR52M1	Q8NGK5	317 aa		10.43	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359		Q96M66	194 aa		10.43	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	UQCC2	Q9BRT2	126 aa		10.43	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	DUSP21	Q9H596	190 aa		10.43	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	AMMECR1	Q9Y4X0	333 aa	Predicted RBP	10.43	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	C12orf77	C9JDV5	145 aa		10.42	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	PTGES3L	E9PB15	166 aa		10.42	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359		G3V4G9	280 aa		10.42	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359		H3BUI4	141 aa		10.42	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	ORC5	O43913	435 aa		10.42	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	VHL	P40337	213 aa		10.42	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	MNDA	P41218	407 aa		10.42	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	ARHGDIB	P52566	201 aa		10.42	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	SLC35A2	P78381	396 aa		10.42	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	EMX1	Q04741	257 aa	Predicted RBP	10.42	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	EBI3	Q14213	229 aa		10.42	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	NSUN5P1	Q3KNT7	163 aa		10.42	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	ACSM3	Q53FZ2	586 aa		10.42	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	SAMD5	Q5TGI4	173 aa		10.42	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	AWAT2	Q6E213	333 aa		10.42	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	NDUFA11	Q86Y39	141 aa		10.42	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	C1QL4	Q86Z23	238 aa		10.42	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	OR5AU1	Q8NGC0	362 aa		10.42	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	OR56B4	Q8NH76	319 aa		10.42	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	UBALD1	Q8TB05	177 aa		10.42	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	CAPSL	Q8WWF8	208 aa		10.42	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	ARL11	Q969Q4	196 aa		10.42	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	ST6GALNAC6	Q969X2	333 aa		10.42	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	RPE	Q96AT9	228 aa		10.42	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	AKR1E2	Q96JD6	320 aa		10.42	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	MND1	Q9BWT6	205 aa		10.42	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	BANF2	Q9H503	90 aa		10.42	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	SPACA1	Q9HBV2	294 aa		10.42	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	GFOD1	Q9NXC2	390 aa		10.42	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	FAM90A10P	A6NDY2	464 aa		10.41	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	FAM90A7P	A6NKC0	464 aa		10.41	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	FAM90A23P	A8MXZ1	464 aa		10.41	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	LPL	P06858	475 aa		10.41	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	SNRNP70	P08621	437 aa	Known RBP	10.41	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	FAM106CP	P0CH98	169 aa		10.41	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	MGMT	P16455	207 aa		10.41	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	GNG10	P50151	68 aa		10.41	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	RAB7A	P51149	207 aa		10.41	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	ZNF134	P52741	427 aa		10.41	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	ZNF816	Q0VGE8	651 aa	Predicted RBP	10.41	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	GPR50	Q13585	617 aa		10.41	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	BEAN1	Q3B7T3	259 aa		10.41	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	SYT6	Q5T7P8	510 aa	Predicted RBP	10.41	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	RAB12	Q6IQ22	244 aa		10.41	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	C10orf99	Q6UWK7	81 aa		10.41	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	OR8H3	Q8N146	312 aa		10.41	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	MS4A15	Q8N5U1	240 aa		10.41	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	NKAIN3	Q8N8D7	197 aa		10.41	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	ZNF439	Q8NDP4	499 aa		10.41	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	TOMM40L	Q969M1	308 aa		10.41	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	SELENOI	Q9C0D9	397 aa		10.41	□□□□□ -0.74
TNFRSF1A-215	ENST00000543359	VCX	Q9H320	206 aa		10.41	□□□□□ -0.74

Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms