RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 CRYM-AS1A6NIL9 109 aa8.2□□□□□ -1.1
CTNNA1-243ENST00000540387 ZNF814B7Z6K7 855 aa8.2□□□□□ -1.1
CTNNA1-243ENST00000540387 PITX3O75364 302 aa8.2□□□□□ -1.1
CTNNA1-243ENST00000540387 HIST1H1DP16402 221 aaKnown RBP8.2□□□□□ -1.1
CTNNA1-243ENST00000540387 FAHP16930 419 aa8.2□□□□□ -1.1
CTNNA1-243ENST00000540387 OMGP23515 440 aa8.2□□□□□ -1.1
CTNNA1-243ENST00000540387 EMDP50402 254 aa8.2□□□□□ -1.1
CTNNA1-243ENST00000540387 MTCP1P56278 107 aa8.2□□□□□ -1.1
CTNNA1-243ENST00000540387 CTXN1P60606 82 aa8.2□□□□□ -1.1
CTNNA1-243ENST00000540387 ARF6P62330 175 aa8.2□□□□□ -1.1
CTNNA1-243ENST00000540387 SUMO1P63165 101 aaKnown RBP8.2□□□□□ -1.1
CTNNA1-243ENST00000540387 SP6Q3SY56 376 aa8.2□□□□□ -1.1
CTNNA1-243ENST00000540387 ABHD17CQ6PCB6 329 aa8.2□□□□□ -1.1
CTNNA1-243ENST00000540387 FIGLAQ6QHK4 219 aa8.2□□□□□ -1.1
CTNNA1-243ENST00000540387 CYP2G1PQ6ZSU1 146 aa8.2□□□□□ -1.1
CTNNA1-243ENST00000540387 ERASQ7Z444 233 aa8.2□□□□□ -1.1
CTNNA1-243ENST00000540387 LYZL2Q7Z4W2 148 aa8.2□□□□□ -1.1
CTNNA1-243ENST00000540387 SULF2Q8IWU5 870 aa8.2□□□□□ -1.1
CTNNA1-243ENST00000540387 OR2M7Q8NG81 312 aa8.2□□□□□ -1.1
CTNNA1-243ENST00000540387 OR51I2Q9H344 312 aa8.2□□□□□ -1.1
CTNNA1-243ENST00000540387 ZNF160Q9HCG1 818 aa8.2□□□□□ -1.1
CTNNA1-243ENST00000540387 HHLA2Q9UM44 414 aa8.2□□□□□ -1.1
CTNNA1-243ENST00000540387 SLC5A6Q9Y289 635 aa8.2□□□□□ -1.1
CTNNA1-243ENST00000540387 SNRNP200O75643 2136 aaKnown RBP8.2□□□□□ -1.1
CTNNA1-243ENST00000540387 KMT2EQ8IZD2 1858 aa8.19□□□□□ -1.1
CTNNA1-243ENST00000540387 LY6G6EA0A0G2JKS1 128 aa8.19□□□□□ -1.1
CTNNA1-243ENST00000540387 IGSF23A1L1A6 192 aa8.19□□□□□ -1.1
CTNNA1-243ENST00000540387 OR5B21A6NL26 309 aa8.19□□□□□ -1.1
CTNNA1-243ENST00000540387 RNF212BA8MTL3 300 aa8.19□□□□□ -1.1
CTNNA1-243ENST00000540387 BCL6P41182 706 aa8.19□□□□□ -1.1
CTNNA1-243ENST00000540387 GFERP55789 205 aa8.19□□□□□ -1.1
CTNNA1-243ENST00000540387 RPL23P62829 140 aaKnown RBP8.19□□□□□ -1.1
CTNNA1-243ENST00000540387 ARL6IP1Q15041 203 aa8.19□□□□□ -1.1
CTNNA1-243ENST00000540387 ZIC1Q15915 447 aa8.19□□□□□ -1.1
CTNNA1-243ENST00000540387 C1orf140Q5VVS0 124 aa8.19□□□□□ -1.1
CTNNA1-243ENST00000540387 MARCH3Q86UD3 253 aa8.19□□□□□ -1.1
CTNNA1-243ENST00000540387 C1orf174Q8IYL3 243 aa8.19□□□□□ -1.1
CTNNA1-243ENST00000540387 OR2C3Q8N628 320 aa8.19□□□□□ -1.1
CTNNA1-243ENST00000540387 SUMF1Q8NBK3 374 aa8.19□□□□□ -1.1
CTNNA1-243ENST00000540387 PRSS33Q8NF86 280 aa8.19□□□□□ -1.1
CTNNA1-243ENST00000540387 GNPNAT1Q96EK6 184 aaPredicted RBP8.19□□□□□ -1.1
CTNNA1-243ENST00000540387 FOXN4Q96NZ1 517 aa8.19□□□□□ -1.1
CTNNA1-243ENST00000540387 LMF2Q9BU23 707 aaKnown RBP8.19□□□□□ -1.1
CTNNA1-243ENST00000540387 PATZ1Q9HBE1 687 aaKnown RBP8.19□□□□□ -1.1
CTNNA1-243ENST00000540387 U3KQA8 63 aa8.19□□□□□ -1.1
CTNNA1-243ENST00000540387 SCN3AQ9NY46 2000 aa8.19□□□□□ -1.1
CTNNA1-243ENST00000540387 RP1P56715 2156 aa8.19□□□□□ -1.1
CTNNA1-243ENST00000540387 UNC13CQ8NB66 2214 aa8.19□□□□□ -1.1
CTNNA1-243ENST00000540387 IGHV1OR21-1A0A087WYE8 117 aa8.19□□□□□ -1.1
CTNNA1-243ENST00000540387 LOC107986453A0A1B0GWG9 222 aa8.19□□□□□ -1.1
CTNNA1-243ENST00000540387 A0A1W2PNV4 684 aa8.19□□□□□ -1.1
CTNNA1-243ENST00000540387 A0A1W2PRS3 328 aa8.19□□□□□ -1.1
CTNNA1-243ENST00000540387 GRIFINA4D1Z8 144 aa8.19□□□□□ -1.1
CTNNA1-243ENST00000540387 LRRC3CA6NJW4 275 aa8.19□□□□□ -1.1
CTNNA1-243ENST00000540387 TMEM14DPA8MWL7 114 aa8.19□□□□□ -1.1
CTNNA1-243ENST00000540387 C22orf46C9J442 243 aa8.19□□□□□ -1.1
CTNNA1-243ENST00000540387 TNFSF14O43557 240 aa8.19□□□□□ -1.1
CTNNA1-243ENST00000540387 MPZL1O95297 269 aa8.19□□□□□ -1.1
CTNNA1-243ENST00000540387 CTSDP07339 412 aaPredicted RBP8.19□□□□□ -1.1
CTNNA1-243ENST00000540387 SNU13P55769 128 aaKnown RBP8.19□□□□□ -1.1
CTNNA1-243ENST00000540387 CFHR1Q03591 330 aa8.19□□□□□ -1.1
CTNNA1-243ENST00000540387 ARFRP1Q13795 201 aa8.19□□□□□ -1.1
CTNNA1-243ENST00000540387 TRMT12Q53H54 448 aaKnown RBP8.19□□□□□ -1.1
CTNNA1-243ENST00000540387 GUSBP11Q6P575 273 aa8.19□□□□□ -1.1
CTNNA1-243ENST00000540387 ZNF596Q8TC21 504 aa8.19□□□□□ -1.1
CTNNA1-243ENST00000540387 SGCZQ96LD1 299 aa8.19□□□□□ -1.1
CTNNA1-243ENST00000540387 P2RX4Q99571 388 aa8.19□□□□□ -1.1
CTNNA1-243ENST00000540387 SOHLH2Q9NX45 425 aa8.19□□□□□ -1.1
CTNNA1-243ENST00000540387 TP53TG3Q9ULZ0 132 aa8.19□□□□□ -1.1
CTNNA1-243ENST00000540387 PXMP4Q9Y6I8 212 aa8.19□□□□□ -1.1
CTNNA1-243ENST00000540387 MUC6Q6W4X9 2439 aa8.19□□□□□ -1.1
CTNNA1-243ENST00000540387 A0A0J9YY10 115 aa8.18□□□□□ -1.1
CTNNA1-243ENST00000540387 CEBPZOSA8MTT3 80 aa8.18□□□□□ -1.1
CTNNA1-243ENST00000540387 IL3RAP26951 378 aa8.18□□□□□ -1.1
CTNNA1-243ENST00000540387 TMEM50BP56557 158 aa8.18□□□□□ -1.1
CTNNA1-243ENST00000540387 LINC00310P59036 64 aa8.18□□□□□ -1.1
CTNNA1-243ENST00000540387 TAS2R46P59540 309 aa8.18□□□□□ -1.1
CTNNA1-243ENST00000540387 GNMTQ14749 295 aa8.18□□□□□ -1.1
CTNNA1-243ENST00000540387 LGI3Q8N145 548 aa8.18□□□□□ -1.1
CTNNA1-243ENST00000540387 LRRC25Q8N386 305 aaPredicted RBP8.18□□□□□ -1.1
CTNNA1-243ENST00000540387 Q8N976 141 aa8.18□□□□□ -1.1
CTNNA1-243ENST00000540387 OR5AU1Q8NGC0 362 aa8.18□□□□□ -1.1
CTNNA1-243ENST00000540387 BTF3L4Q96K17 158 aa8.18□□□□□ -1.1
CTNNA1-243ENST00000540387 SLC46A1Q96NT5 459 aa8.18□□□□□ -1.1
CTNNA1-243ENST00000540387 FAM60AQ9NP50 221 aa8.18□□□□□ -1.1
CTNNA1-243ENST00000540387 OTOGLQ3ZCN5 2332 aa8.18□□□□□ -1.1
CTNNA1-243ENST00000540387 HCRTR1O43613 425 aa8.18□□□□□ -1.1
CTNNA1-243ENST00000540387 GDF9O60383 454 aa8.18□□□□□ -1.1
CTNNA1-243ENST00000540387 GOSR1O95249 250 aa8.18□□□□□ -1.1
CTNNA1-243ENST00000540387 HLA-DQA2P01906 255 aa8.18□□□□□ -1.1
CTNNA1-243ENST00000540387 HPNP05981 417 aa8.18□□□□□ -1.1
CTNNA1-243ENST00000540387 DUSP1P28562 367 aa8.18□□□□□ -1.1
CTNNA1-243ENST00000540387 TSPOP30536 169 aa8.18□□□□□ -1.1
CTNNA1-243ENST00000540387 SRP14P37108 136 aaKnown RBP8.18□□□□□ -1.1
CTNNA1-243ENST00000540387 NSDHLQ15738 373 aa8.18□□□□□ -1.1
CTNNA1-243ENST00000540387 ZNF787Q6DD87 383 aa8.18□□□□□ -1.1
CTNNA1-243ENST00000540387 BAHD1Q8TBE0 780 aaPredicted RBP8.18□□□□□ -1.1
CTNNA1-243ENST00000540387 STARD4Q96DR4 205 aa8.18□□□□□ -1.1
CTNNA1-243ENST00000540387 SLAMF6Q96DU3 332 aa8.18□□□□□ -1.1
CTNNA1-243ENST00000540387 AGMATQ9BSE5 352 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms