RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 PTGES3LE9PB15 166 aa10.64□□□□□ -0.71
VPS28-211ENST00000530790 M0QZK8 103 aa10.64□□□□□ -0.71
VPS28-211ENST00000530790 SDCBPO00560 298 aaPredicted RBP10.64□□□□□ -0.71
VPS28-211ENST00000530790 CRTAPO75718 401 aaPredicted RBP10.64□□□□□ -0.71
VPS28-211ENST00000530790 OPN1MWP04001 364 aa10.64□□□□□ -0.71
VPS28-211ENST00000530790 FAM106CPP0CH98 169 aa10.64□□□□□ -0.71
VPS28-211ENST00000530790 OPN1MW2P0DN77 364 aa10.64□□□□□ -0.71
VPS28-211ENST00000530790 OPN1MW3P0DN78 364 aa10.64□□□□□ -0.71
VPS28-211ENST00000530790 MGMTP16455 207 aa10.64□□□□□ -0.71
VPS28-211ENST00000530790 GZMHP20718 246 aa10.64□□□□□ -0.71
VPS28-211ENST00000530790 RAB7AP51149 207 aa10.64□□□□□ -0.71
VPS28-211ENST00000530790 GABPB1Q06547 395 aaPredicted RBP10.64□□□□□ -0.71
VPS28-211ENST00000530790 GPR50Q13585 617 aa10.64□□□□□ -0.71
VPS28-211ENST00000530790 ABCA11PQ4W5N1 156 aa10.64□□□□□ -0.71
VPS28-211ENST00000530790 PDLIM3Q53GG5 364 aaPredicted RBP10.64□□□□□ -0.71
VPS28-211ENST00000530790 C6orf141Q5SZD1 244 aa10.64□□□□□ -0.71
VPS28-211ENST00000530790 RNLSQ5VYX0 342 aa10.64□□□□□ -0.71
VPS28-211ENST00000530790 ZNF497Q6ZNH5 498 aa10.64□□□□□ -0.71
VPS28-211ENST00000530790 LYG1Q8N1E2 194 aa10.64□□□□□ -0.71
VPS28-211ENST00000530790 OR56B4Q8NH76 319 aa10.64□□□□□ -0.71
VPS28-211ENST00000530790 WIPF2Q8TF74 440 aaPredicted RBP10.64□□□□□ -0.71
VPS28-211ENST00000530790 ARL11Q969Q4 196 aa10.64□□□□□ -0.71
VPS28-211ENST00000530790 UQCC2Q9BRT2 126 aa10.64□□□□□ -0.71
VPS28-211ENST00000530790 MOB4Q9Y3A3 225 aa10.64□□□□□ -0.71
VPS28-211ENST00000530790 A0A1W2PPI3 338 aa10.63□□□□□ -0.71
VPS28-211ENST00000530790 FAM90A10PA6NDY2 464 aa10.63□□□□□ -0.71
VPS28-211ENST00000530790 FAM90A18PA6NE21 464 aa10.63□□□□□ -0.71
VPS28-211ENST00000530790 FAM90A16PA6NEW6 464 aa10.63□□□□□ -0.71
VPS28-211ENST00000530790 FAM90A20PA6NIJ5 464 aa10.63□□□□□ -0.71
VPS28-211ENST00000530790 FAM90A7PA6NKC0 464 aa10.63□□□□□ -0.71
VPS28-211ENST00000530790 FAM90A12PA8MX19 464 aa10.63□□□□□ -0.71
VPS28-211ENST00000530790 FAM90A5PA8MXJ8 464 aa10.63□□□□□ -0.71
VPS28-211ENST00000530790 FAM90A23PA8MXZ1 464 aa10.63□□□□□ -0.71
VPS28-211ENST00000530790 PIN1P1O15428 100 aa10.63□□□□□ -0.71
VPS28-211ENST00000530790 LPLP06858 475 aa10.63□□□□□ -0.71
VPS28-211ENST00000530790 SNRNP70P08621 437 aaKnown RBP10.63□□□□□ -0.71
VPS28-211ENST00000530790 FAM90A15PP0C7V4 464 aa10.63□□□□□ -0.71
VPS28-211ENST00000530790 FAM90A13PP0C7W8 464 aa10.63□□□□□ -0.71
VPS28-211ENST00000530790 FAM90A14PP0C7W9 464 aa10.63□□□□□ -0.71
VPS28-211ENST00000530790 FAM90A24PP0C7X0 464 aa10.63□□□□□ -0.71
VPS28-211ENST00000530790 HES1Q14469 280 aa10.63□□□□□ -0.71
VPS28-211ENST00000530790 FBLN7Q53RD9 439 aa10.63□□□□□ -0.71
VPS28-211ENST00000530790 RAB12Q6IQ22 244 aa10.63□□□□□ -0.71
VPS28-211ENST00000530790 C1QL4Q86Z23 238 aa10.63□□□□□ -0.71
VPS28-211ENST00000530790 OR8H3Q8N146 312 aa10.63□□□□□ -0.71
VPS28-211ENST00000530790 MS4A15Q8N5U1 240 aa10.63□□□□□ -0.71
VPS28-211ENST00000530790 OR52M1Q8NGK5 317 aa10.63□□□□□ -0.71
VPS28-211ENST00000530790 CCDC107Q8WV48 283 aa10.63□□□□□ -0.71
VPS28-211ENST00000530790 CITED2Q99967 270 aaPredicted RBP10.63□□□□□ -0.71
VPS28-211ENST00000530790 OCSTAMPQ9BR26 566 aa10.63□□□□□ -0.71
VPS28-211ENST00000530790 TMED9Q9BVK6 235 aa10.63□□□□□ -0.71
VPS28-211ENST00000530790 SELENOIQ9C0D9 397 aa10.63□□□□□ -0.71
VPS28-211ENST00000530790 CST11Q9H112 138 aa10.63□□□□□ -0.71
VPS28-211ENST00000530790 BANF2Q9H503 90 aa10.63□□□□□ -0.71
VPS28-211ENST00000530790 RAB9BQ9NP90 201 aa10.63□□□□□ -0.71
VPS28-211ENST00000530790 ETAA1Q9NY74 926 aa10.63□□□□□ -0.71
VPS28-211ENST00000530790 TRAPPC2LQ9UL33 140 aa10.63□□□□□ -0.71
VPS28-211ENST00000530790 NOTCH1P46531 2555 aa10.62□□□□□ -0.71
VPS28-211ENST00000530790 A0A1W2PPE3 182 aa10.62□□□□□ -0.71
VPS28-211ENST00000530790 C15orf65H3BRN8 121 aa10.62□□□□□ -0.71
VPS28-211ENST00000530790 HSD17B6O14756 317 aa10.62□□□□□ -0.71
VPS28-211ENST00000530790 ORC5O43913 435 aa10.62□□□□□ -0.71
VPS28-211ENST00000530790 MT-ND4P03905 459 aa10.62□□□□□ -0.71
VPS28-211ENST00000530790 IL3RAP26951 378 aa10.62□□□□□ -0.71
VPS28-211ENST00000530790 EMX1Q04741 257 aaPredicted RBP10.62□□□□□ -0.71
VPS28-211ENST00000530790 INSL4Q14641 139 aa10.62□□□□□ -0.71
VPS28-211ENST00000530790 SPHARQ15513 63 aa10.62□□□□□ -0.71
VPS28-211ENST00000530790 MED22Q15528 200 aa10.62□□□□□ -0.71
VPS28-211ENST00000530790 ACSM3Q53FZ2 586 aa10.62□□□□□ -0.71
VPS28-211ENST00000530790 KIAA2026Q5HYC2 2103 aa10.62□□□□□ -0.71
VPS28-211ENST00000530790 C9orf152Q5JTZ5 239 aa10.62□□□□□ -0.71
VPS28-211ENST00000530790 RBM48Q5RL73 367 aaKnown RBP10.62□□□□□ -0.71
VPS28-211ENST00000530790 C6orf183Q5T699 404 aa10.62□□□□□ -0.71
VPS28-211ENST00000530790 LYPD6Q86Y78 171 aa10.62□□□□□ -0.71
VPS28-211ENST00000530790 THNSL2Q86YJ6 484 aa10.62□□□□□ -0.71
VPS28-211ENST00000530790 DRAM1Q8N682 238 aa10.62□□□□□ -0.71
VPS28-211ENST00000530790 TMEM104Q8NE00 496 aa10.62□□□□□ -0.71
VPS28-211ENST00000530790 OR4F17Q8NGA8 305 aa10.62□□□□□ -0.71
VPS28-211ENST00000530790 UBALD1Q8TB05 177 aa10.62□□□□□ -0.71
VPS28-211ENST00000530790 NRG4Q8WWG1 115 aa10.62□□□□□ -0.71
VPS28-211ENST00000530790 FAM46BQ96A09 425 aa10.62□□□□□ -0.71
VPS28-211ENST00000530790 R3HDM4Q96D70 268 aa10.62□□□□□ -0.71
VPS28-211ENST00000530790 Q96M66 194 aa10.62□□□□□ -0.71
VPS28-211ENST00000530790 OR4F4Q96R69 305 aa10.62□□□□□ -0.71
VPS28-211ENST00000530790 VCX3BQ9H321 246 aa10.62□□□□□ -0.71
VPS28-211ENST00000530790 GFOD1Q9NXC2 390 aa10.62□□□□□ -0.71
VPS28-211ENST00000530790 GHRLQ9UBU3 117 aa10.62□□□□□ -0.71
VPS28-211ENST00000530790 LSM2Q9Y333 95 aaKnown RBP10.62□□□□□ -0.71
VPS28-211ENST00000530790 PEX16Q9Y5Y5 336 aa10.62□□□□□ -0.71
VPS28-211ENST00000530790 IGHV3-43A0A0B4J1X8 118 aa10.61□□□□□ -0.71
VPS28-211ENST00000530790 FAM90A9PA6NNJ1 464 aa10.61□□□□□ -0.71
VPS28-211ENST00000530790 CCRL2O00421 344 aa10.61□□□□□ -0.71
VPS28-211ENST00000530790 SPINT2O43291 252 aa10.61□□□□□ -0.71
VPS28-211ENST00000530790 CA11O75493 328 aa10.61□□□□□ -0.71
VPS28-211ENST00000530790 UBBP0CG47 229 aa10.61□□□□□ -0.71
VPS28-211ENST00000530790 IGHV3-43DP0DP04 118 aa10.61□□□□□ -0.71
VPS28-211ENST00000530790 TMEM11P17152 192 aa10.61□□□□□ -0.71
VPS28-211ENST00000530790 SLC35A2P78381 396 aa10.61□□□□□ -0.71
VPS28-211ENST00000530790 ZNF816Q0VGE8 651 aaPredicted RBP10.61□□□□□ -0.71
VPS28-211ENST00000530790 DIAPH2-AS1Q14236 149 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms