RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 GATA4P43694 442 aa17.4■□□□□ 0.38
VPS28-209ENST00000528142 RND3P61587 244 aa17.4■□□□□ 0.38
VPS28-209ENST00000528142 BSPH1Q075Z2 132 aa17.4■□□□□ 0.38
VPS28-209ENST00000528142 HMGN3Q15651 99 aa17.4■□□□□ 0.38
VPS28-209ENST00000528142 SLC35E4Q6ICL7 350 aa17.4■□□□□ 0.38
VPS28-209ENST00000528142 GCSAMQ8N6F7 178 aa17.4■□□□□ 0.38
VPS28-209ENST00000528142 CD177Q8N6Q3 437 aa17.4■□□□□ 0.38
VPS28-209ENST00000528142 OR10J5Q8NHC4 309 aa17.4■□□□□ 0.38
VPS28-209ENST00000528142 SECTM1Q8WVN6 248 aa17.4■□□□□ 0.38
VPS28-209ENST00000528142 SEBOXQ9HB31 216 aaPredicted RBP17.4■□□□□ 0.38
VPS28-209ENST00000528142 METRNQ9UJH8 293 aa17.4■□□□□ 0.38
VPS28-209ENST00000528142 TMEM30CPA0ZSE6 113 aa17.39■□□□□ 0.37
VPS28-209ENST00000528142 MPPED1O15442 326 aa17.39■□□□□ 0.37
VPS28-209ENST00000528142 CFDP00746 253 aaPredicted RBP17.39■□□□□ 0.37
VPS28-209ENST00000528142 OR3A1P47881 315 aa17.39■□□□□ 0.37
VPS28-209ENST00000528142 FAM90A1Q86YD7 464 aa17.39■□□□□ 0.37
VPS28-209ENST00000528142 GLYATL2Q8WU03 294 aa17.39■□□□□ 0.37
VPS28-209ENST00000528142 ITLN1Q8WWA0 313 aa17.39■□□□□ 0.37
VPS28-209ENST00000528142 MSI2Q96DH6 328 aaKnown RBP17.39■□□□□ 0.37
VPS28-209ENST00000528142 RNF126Q9BV68 326 aa17.39■□□□□ 0.37
VPS28-209ENST00000528142 SLC5A7Q9GZV3 580 aa17.39■□□□□ 0.37
VPS28-209ENST00000528142 ARL6Q9H0F7 186 aa17.39■□□□□ 0.37
VPS28-209ENST00000528142 OR2W1Q9Y3N9 320 aa17.39■□□□□ 0.37
VPS28-209ENST00000528142 CADP27708 2225 aa17.39■□□□□ 0.37
VPS28-209ENST00000528142 ERVH48-1M5A8F1 160 aa17.38■□□□□ 0.37
VPS28-209ENST00000528142 GPR31O00270 319 aa17.38■□□□□ 0.37
VPS28-209ENST00000528142 LHBP01229 141 aa17.38■□□□□ 0.37
VPS28-209ENST00000528142 IGHV1-46P01743 117 aa17.38■□□□□ 0.37
VPS28-209ENST00000528142 COL10A1Q03692 680 aa17.38■□□□□ 0.37
VPS28-209ENST00000528142 LIAT1Q6ZQX7 453 aa17.38■□□□□ 0.37
VPS28-209ENST00000528142 ZNF818PQ6ZRF7 136 aa17.38■□□□□ 0.37
VPS28-209ENST00000528142 MOGAT3Q86VF5 341 aa17.38■□□□□ 0.37
VPS28-209ENST00000528142 ZNF565Q8N9K5 539 aa17.38■□□□□ 0.37
VPS28-209ENST00000528142 THAP6Q8TBB0 222 aa17.38■□□□□ 0.37
VPS28-209ENST00000528142 COQ2Q96H96 371 aa17.38■□□□□ 0.37
VPS28-209ENST00000528142 VRK1Q99986 396 aaPredicted RBP17.38■□□□□ 0.37
VPS28-209ENST00000528142 OR1A1Q9P1Q5 309 aa17.38■□□□□ 0.37
VPS28-209ENST00000528142 ATXN7O15265 892 aaPredicted RBP17.37■□□□□ 0.37
VPS28-209ENST00000528142 PSG2P11465 335 aa17.37■□□□□ 0.37
VPS28-209ENST00000528142 HTR2BP41595 481 aa17.37■□□□□ 0.37
VPS28-209ENST00000528142 C18orf12Q96KH6 178 aa17.37■□□□□ 0.37
VPS28-209ENST00000528142 CNTNAP3BQ96NU0 1288 aa17.37■□□□□ 0.37
VPS28-209ENST00000528142 CNTNAP3Q9BZ76 1288 aa17.37■□□□□ 0.37
VPS28-209ENST00000528142 SHARPINQ9H0F6 387 aa17.37■□□□□ 0.37
VPS28-209ENST00000528142 TAF9BQ9HBM6 251 aa17.37■□□□□ 0.37
VPS28-209ENST00000528142 CCL28Q9NRJ3 127 aa17.37■□□□□ 0.37
VPS28-209ENST00000528142 MBD2Q9UBB5 411 aa17.37■□□□□ 0.37
VPS28-209ENST00000528142 H0YIZ8 118 aa17.37■□□□□ 0.37
VPS28-209ENST00000528142 PRDX2P32119 198 aa17.37■□□□□ 0.37
VPS28-209ENST00000528142 ASCL1P50553 236 aa17.37■□□□□ 0.37
VPS28-209ENST00000528142 EXOSC2Q13868 293 aaKnown RBP17.37■□□□□ 0.37
VPS28-209ENST00000528142 ZNF345Q14585 488 aa17.37■□□□□ 0.37
VPS28-209ENST00000528142 ADIPOQQ15848 244 aa17.37■□□□□ 0.37
VPS28-209ENST00000528142 GGNBP1Q5YKI7 109 aa17.37■□□□□ 0.37
VPS28-209ENST00000528142 LILRB4Q8NHJ6 448 aa17.37■□□□□ 0.37
VPS28-209ENST00000528142 IL1F10Q8WWZ1 152 aa17.37■□□□□ 0.37
VPS28-209ENST00000528142 TP53RKQ96S44 253 aa17.37■□□□□ 0.37
VPS28-209ENST00000528142 IL19Q9UHD0 177 aa17.37■□□□□ 0.37
VPS28-209ENST00000528142 KIF25Q9UIL4 384 aa17.37■□□□□ 0.37
VPS28-209ENST00000528142 ZDHHC8Q9ULC8 765 aa17.37■□□□□ 0.37
VPS28-209ENST00000528142 KALRNO60229 2985 aa17.37■□□□□ 0.37
VPS28-209ENST00000528142 IGKV1D-17A0A075B6S4 117 aa17.36■□□□□ 0.37
VPS28-209ENST00000528142 A0A0D9SG52 128 aa17.36■□□□□ 0.37
VPS28-209ENST00000528142 C3orf85A0A1B0GTC6 90 aa17.36■□□□□ 0.37
VPS28-209ENST00000528142 RNF222A6NCQ9 220 aa17.36■□□□□ 0.37
VPS28-209ENST00000528142 HEXAP06865 529 aa17.36■□□□□ 0.37
VPS28-209ENST00000528142 PAX5Q02548 391 aa17.36■□□□□ 0.37
VPS28-209ENST00000528142 AESQ08117 197 aa17.36■□□□□ 0.37
VPS28-209ENST00000528142 TBC1D26Q86UD7 250 aa17.36■□□□□ 0.37
VPS28-209ENST00000528142 KCNRGQ8N5I3 272 aa17.36■□□□□ 0.37
VPS28-209ENST00000528142 CCL21O00585 134 aa17.35■□□□□ 0.37
VPS28-209ENST00000528142 PHF1O43189 567 aaPredicted RBP17.35■□□□□ 0.37
VPS28-209ENST00000528142 ZNF737O75373 536 aa17.35■□□□□ 0.37
VPS28-209ENST00000528142 OR2F2O95006 317 aa17.35■□□□□ 0.37
VPS28-209ENST00000528142 IFNA7P01567 189 aa17.35■□□□□ 0.37
VPS28-209ENST00000528142 IFNA21P01568 189 aa17.35■□□□□ 0.37
VPS28-209ENST00000528142 LYL1P12980 280 aa17.35■□□□□ 0.37
VPS28-209ENST00000528142 AP2S1P53680 142 aaPredicted RBP17.35■□□□□ 0.37
VPS28-209ENST00000528142 TNFAIP6P98066 277 aaPredicted RBP17.35■□□□□ 0.37
VPS28-209ENST00000528142 OR2F1Q13607 317 aa17.35■□□□□ 0.37
VPS28-209ENST00000528142 TESK1Q15569 626 aa17.35■□□□□ 0.37
VPS28-209ENST00000528142 FBXL19-AS1Q494R0 122 aa17.35■□□□□ 0.37
VPS28-209ENST00000528142 LGI3Q8N145 548 aa17.35■□□□□ 0.37
VPS28-209ENST00000528142 ERRFI1Q9UJM3 462 aaPredicted RBP17.35■□□□□ 0.37
VPS28-209ENST00000528142 HSD17B6O14756 317 aa17.35■□□□□ 0.37
VPS28-209ENST00000528142 OR4A8P0C604 315 aa17.35■□□□□ 0.37
VPS28-209ENST00000528142 SFTPCP11686 197 aa17.35■□□□□ 0.37
VPS28-209ENST00000528142 IAH1Q2TAA2 248 aaPredicted RBP17.35■□□□□ 0.37
VPS28-209ENST00000528142 ACOT7LQ6ZUV0 252 aa17.35■□□□□ 0.37
VPS28-209ENST00000528142 PRR18Q8N4B5 295 aa17.35■□□□□ 0.37
VPS28-209ENST00000528142 LHFPL5Q8TAF8 219 aa17.35■□□□□ 0.37
VPS28-209ENST00000528142 GCM1Q9NP62 436 aa17.35■□□□□ 0.37
VPS28-209ENST00000528142 RP2O75695 350 aa17.34■□□□□ 0.37
VPS28-209ENST00000528142 LYZL2Q7Z4W2 148 aa17.34■□□□□ 0.37
VPS28-209ENST00000528142 BOLLQ8N9W6 283 aaKnown RBP17.34■□□□□ 0.37
VPS28-209ENST00000528142 LILRB1Q8NHL6 650 aaPredicted RBP17.34■□□□□ 0.37
VPS28-209ENST00000528142 UBALD1Q8TB05 177 aa17.34■□□□□ 0.37
VPS28-209ENST00000528142 TMEM222Q9H0R3 208 aa17.34■□□□□ 0.37
VPS28-209ENST00000528142 NGBQ9NPG2 151 aa17.34■□□□□ 0.37
VPS28-209ENST00000528142 KCNIP1Q9NZI2 227 aa17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms