RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 NCOR1P1Q9H4R4 102 aa17.51■□□□□ 0.39
VPS28-208ENST00000527797 DUX4Q9UBX2 424 aa17.51■□□□□ 0.39
VPS28-208ENST00000527797 GPR132Q9UNW8 380 aa17.51■□□□□ 0.39
VPS28-208ENST00000527797 DOPEY1Q5JWR5 2465 aa17.51■□□□□ 0.39
VPS28-208ENST00000527797 ODAMA1E959 279 aa17.5■□□□□ 0.39
VPS28-208ENST00000527797 TNFRSF13BO14836 293 aaPredicted RBP17.5■□□□□ 0.39
VPS28-208ENST00000527797 RP2O75695 350 aa17.5■□□□□ 0.39
VPS28-208ENST00000527797 FSTL3O95633 263 aa17.5■□□□□ 0.39
VPS28-208ENST00000527797 VSIG10L2P0DP72 767 aa17.5■□□□□ 0.39
VPS28-208ENST00000527797 SELLP14151 372 aa17.5■□□□□ 0.39
VPS28-208ENST00000527797 PLA2G2AP14555 144 aa17.5■□□□□ 0.39
VPS28-208ENST00000527797 COX6B1P14854 86 aa17.5■□□□□ 0.39
VPS28-208ENST00000527797 DAOP14920 347 aa17.5■□□□□ 0.39
VPS28-208ENST00000527797 PGAM2P15259 253 aa17.5■□□□□ 0.39
VPS28-208ENST00000527797 NFYAP23511 347 aaPredicted RBP17.5■□□□□ 0.39
VPS28-208ENST00000527797 ERP29P30040 261 aaKnown RBP17.5■□□□□ 0.39
VPS28-208ENST00000527797 CDKN1AP38936 164 aa17.5■□□□□ 0.39
VPS28-208ENST00000527797 EDDM3BP56851 147 aa17.5■□□□□ 0.39
VPS28-208ENST00000527797 TRAT1Q6PIZ9 186 aa17.5■□□□□ 0.39
VPS28-208ENST00000527797 PRR18Q8N4B5 295 aa17.5■□□□□ 0.39
VPS28-208ENST00000527797 MRGPRDQ8TDS7 321 aa17.5■□□□□ 0.39
VPS28-208ENST00000527797 KIRREL1Q96J84 757 aa17.5■□□□□ 0.39
VPS28-208ENST00000527797 LURAP1Q96LR2 239 aa17.5■□□□□ 0.39
VPS28-208ENST00000527797 OR51J1Q9H342 316 aa17.5■□□□□ 0.39
VPS28-208ENST00000527797 A1L4Q6 167 aa17.5■□□□□ 0.39
VPS28-208ENST00000527797 CLEC18AA5D8T8 446 aa17.5■□□□□ 0.39
VPS28-208ENST00000527797 HMX3A6NHT5 357 aa17.5■□□□□ 0.39
VPS28-208ENST00000527797 J3QKU1 62 aa17.5■□□□□ 0.39
VPS28-208ENST00000527797 DIRAS3O95661 229 aa17.5■□□□□ 0.39
VPS28-208ENST00000527797 CLEC18BQ6UXF7 455 aa17.5■□□□□ 0.39
VPS28-208ENST00000527797 ZNF554Q86TJ5 538 aa17.5■□□□□ 0.39
VPS28-208ENST00000527797 CLEC18CQ8NCF0 446 aa17.5■□□□□ 0.39
VPS28-208ENST00000527797 OR13A1Q8NGR1 328 aa17.5■□□□□ 0.39
VPS28-208ENST00000527797 OR10J5Q8NHC4 309 aa17.5■□□□□ 0.39
VPS28-208ENST00000527797 IL1F10Q8WWZ1 152 aa17.5■□□□□ 0.39
VPS28-208ENST00000527797 SEC22CQ9BRL7 303 aa17.5■□□□□ 0.39
VPS28-208ENST00000527797 TMEM246Q9BRR3 403 aa17.5■□□□□ 0.39
VPS28-208ENST00000527797 PLEKHF2Q9H8W4 249 aa17.5■□□□□ 0.39
VPS28-208ENST00000527797 TRBV6-7A0A0A0MS04 114 aa17.49■□□□□ 0.39
VPS28-208ENST00000527797 C12orf77C9JDV5 145 aa17.49■□□□□ 0.39
VPS28-208ENST00000527797 GZMHP20718 246 aa17.49■□□□□ 0.39
VPS28-208ENST00000527797 HERV-K104P61576 105 aa17.49■□□□□ 0.39
VPS28-208ENST00000527797 C4orf46Q504U0 113 aa17.49■□□□□ 0.39
VPS28-208ENST00000527797 SLC25A42Q86VD7 318 aa17.49■□□□□ 0.39
VPS28-208ENST00000527797 ZNF565Q8N9K5 539 aa17.49■□□□□ 0.39
VPS28-208ENST00000527797 MOB3AQ96BX8 217 aa17.49■□□□□ 0.39
VPS28-208ENST00000527797 ABCA4P78363 2273 aa17.49■□□□□ 0.39
VPS28-208ENST00000527797 ADAM20O43506 726 aa17.48■□□□□ 0.39
VPS28-208ENST00000527797 LY6HO94772 140 aa17.48■□□□□ 0.39
VPS28-208ENST00000527797 PPYP01298 95 aa17.48■□□□□ 0.39
VPS28-208ENST00000527797 OR4E1P0C645 316 aa17.48■□□□□ 0.39
VPS28-208ENST00000527797 TRAPPC2P0DI81 140 aa17.48■□□□□ 0.39
VPS28-208ENST00000527797 TRAPPC2BP0DI82 140 aa17.48■□□□□ 0.39
VPS28-208ENST00000527797 AADACP22760 399 aa17.48■□□□□ 0.39
VPS28-208ENST00000527797 TAS2R31P59538 309 aa17.48■□□□□ 0.39
VPS28-208ENST00000527797 BAMBIQ13145 260 aa17.48■□□□□ 0.39
VPS28-208ENST00000527797 ZFAND1Q8TCF1 268 aa17.48■□□□□ 0.39
VPS28-208ENST00000527797 GALMQ96C23 342 aa17.48■□□□□ 0.39
VPS28-208ENST00000527797 OR6C3Q9NZP0 311 aa17.48■□□□□ 0.39
VPS28-208ENST00000527797 KAAG1Q9UBP8 84 aa17.48■□□□□ 0.39
VPS28-208ENST00000527797 SLC25A10Q9UBX3 287 aaPredicted RBP17.48■□□□□ 0.39
VPS28-208ENST00000527797 C14orf166Q9Y224 244 aaKnown RBP17.48■□□□□ 0.39
VPS28-208ENST00000527797 FAM172BPA6NC97 362 aa17.47■□□□□ 0.39
VPS28-208ENST00000527797 SNRPGP15A8MWD9 76 aa17.47■□□□□ 0.39
VPS28-208ENST00000527797 NPIPB11E5RHQ5 1161 aa17.47■□□□□ 0.39
VPS28-208ENST00000527797 NDUFB3O43676 98 aa17.47■□□□□ 0.39
VPS28-208ENST00000527797 F12P00748 615 aaPredicted RBP17.47■□□□□ 0.39
VPS28-208ENST00000527797 ZNF728P0DKX0 622 aa17.47■□□□□ 0.39
VPS28-208ENST00000527797 IL2RGP31785 369 aa17.47■□□□□ 0.39
VPS28-208ENST00000527797 FXYD4P59646 89 aa17.47■□□□□ 0.39
VPS28-208ENST00000527797 FAHD2BQ6P2I3 314 aaPredicted RBP17.47■□□□□ 0.39
VPS28-208ENST00000527797 LYPD2Q6UXB3 125 aa17.47■□□□□ 0.39
VPS28-208ENST00000527797 CAPSLQ8WWF8 208 aa17.47■□□□□ 0.39
VPS28-208ENST00000527797 TOMM40LQ969M1 308 aa17.47■□□□□ 0.39
VPS28-208ENST00000527797 FAHD2AQ96GK7 314 aa17.47■□□□□ 0.39
VPS28-208ENST00000527797 TIMD4Q96H15 378 aa17.47■□□□□ 0.39
VPS28-208ENST00000527797 NEURL2Q9BR09 285 aa17.47■□□□□ 0.39
VPS28-208ENST00000527797 MED28Q9H204 178 aa17.47■□□□□ 0.39
VPS28-208ENST00000527797 C5orf66Q9H5L9 145 aa17.47■□□□□ 0.39
VPS28-208ENST00000527797 OPN4Q9UHM6 478 aa17.47■□□□□ 0.39
VPS28-208ENST00000527797 HSPA12AO43301 675 aa17.47■□□□□ 0.39
VPS28-208ENST00000527797 CREBL2O60519 120 aaPredicted RBP17.47■□□□□ 0.39
VPS28-208ENST00000527797 TUSC2O75896 110 aa17.47■□□□□ 0.39
VPS28-208ENST00000527797 IGHV2-70P01814 119 aa17.47■□□□□ 0.39
VPS28-208ENST00000527797 HBZP02008 142 aa17.47■□□□□ 0.39
VPS28-208ENST00000527797 AKR1C4P17516 323 aa17.47■□□□□ 0.39
VPS28-208ENST00000527797 NDUFB7P17568 137 aa17.47■□□□□ 0.39
VPS28-208ENST00000527797 UCP3P55916 312 aa17.47■□□□□ 0.39
VPS28-208ENST00000527797 RRAS2P62070 204 aaPredicted RBP17.47■□□□□ 0.39
VPS28-208ENST00000527797 CR1LQ2VPA4 569 aa17.47■□□□□ 0.39
VPS28-208ENST00000527797 LRRC10Q5BKY1 277 aa17.47■□□□□ 0.39
VPS28-208ENST00000527797 ZNF626Q68DY1 528 aa17.47■□□□□ 0.39
VPS28-208ENST00000527797 H1FOOQ8IZA3 346 aaPredicted RBP17.47■□□□□ 0.39
VPS28-208ENST00000527797 MUC20Q8N307 709 aaPredicted RBP17.47■□□□□ 0.39
VPS28-208ENST00000527797 ADAD2Q8NCV1 583 aaKnown RBP17.47■□□□□ 0.39
VPS28-208ENST00000527797 OR1L1Q8NH94 360 aa17.47■□□□□ 0.39
VPS28-208ENST00000527797 UBALD1Q8TB05 177 aa17.47■□□□□ 0.39
VPS28-208ENST00000527797 RAB1CQ92928 201 aa17.47■□□□□ 0.39
VPS28-208ENST00000527797 ARL11Q969Q4 196 aa17.47■□□□□ 0.39
VPS28-208ENST00000527797 C14orf79Q96F83 325 aa17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms