RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 IGSF11Q5DX21 431 aa13.36□□□□□ -0.27
NUP54-214ENST00000514307 AADACL3Q5VUY0 350 aa13.36□□□□□ -0.27
NUP54-214ENST00000514307 ZNF660Q6AZW8 331 aaPredicted RBP13.36□□□□□ -0.27
NUP54-214ENST00000514307 SP5Q6BEB4 398 aaPredicted RBP13.36□□□□□ -0.27
NUP54-214ENST00000514307 ZNRF1Q8ND25 227 aa13.36□□□□□ -0.27
NUP54-214ENST00000514307 CYYR1Q96J86 154 aa13.36□□□□□ -0.27
NUP54-214ENST00000514307 NEURL2Q9BR09 285 aa13.36□□□□□ -0.27
NUP54-214ENST00000514307 METRNQ9UJH8 293 aa13.36□□□□□ -0.27
NUP54-214ENST00000514307 KCNIP3Q9Y2W7 256 aa13.36□□□□□ -0.27
NUP54-214ENST00000514307 CADP27708 2225 aa13.36□□□□□ -0.27
NUP54-214ENST00000514307 TRBV6-7A0A0A0MS04 114 aa13.35□□□□□ -0.27
NUP54-214ENST00000514307 ODAMA1E959 279 aa13.35□□□□□ -0.27
NUP54-214ENST00000514307 OR5H14A6NHG9 310 aa13.35□□□□□ -0.27
NUP54-214ENST00000514307 ZNF205O95201 554 aa13.35□□□□□ -0.27
NUP54-214ENST00000514307 CTSDP07339 412 aaPredicted RBP13.35□□□□□ -0.27
NUP54-214ENST00000514307 COX6B1P14854 86 aa13.35□□□□□ -0.27
NUP54-214ENST00000514307 AKR1C4P17516 323 aa13.35□□□□□ -0.27
NUP54-214ENST00000514307 COL8A2P25067 703 aa13.35□□□□□ -0.27
NUP54-214ENST00000514307 P2RX3P56373 397 aa13.35□□□□□ -0.27
NUP54-214ENST00000514307 EDDM3AQ14507 147 aa13.35□□□□□ -0.27
NUP54-214ENST00000514307 HMGN3Q15651 99 aa13.35□□□□□ -0.27
NUP54-214ENST00000514307 CR1LQ2VPA4 569 aa13.35□□□□□ -0.27
NUP54-214ENST00000514307 ABCA11PQ4W5N1 156 aa13.35□□□□□ -0.27
NUP54-214ENST00000514307 LRRC10Q5BKY1 277 aa13.35□□□□□ -0.27
NUP54-214ENST00000514307 SLC38A6Q8IZM9 456 aa13.35□□□□□ -0.27
NUP54-214ENST00000514307 MUC20Q8N307 709 aaPredicted RBP13.35□□□□□ -0.27
NUP54-214ENST00000514307 ZNF431Q8TF32 576 aaPredicted RBP13.35□□□□□ -0.27
NUP54-214ENST00000514307 MOB3AQ96BX8 217 aa13.35□□□□□ -0.27
NUP54-214ENST00000514307 ZNF486Q96H40 463 aaPredicted RBP13.35□□□□□ -0.27
NUP54-214ENST00000514307 COQ2Q96H96 371 aa13.35□□□□□ -0.27
NUP54-214ENST00000514307 KIRREL1Q96J84 757 aa13.35□□□□□ -0.27
NUP54-214ENST00000514307 GAFA1Q96PS6 74 aa13.35□□□□□ -0.27
NUP54-214ENST00000514307 KAAG1Q9UBP8 84 aa13.35□□□□□ -0.27
NUP54-214ENST00000514307 LPAR3Q9UBY5 353 aa13.35□□□□□ -0.27
NUP54-214ENST00000514307 ZNF69Q9UC07 566 aa13.35□□□□□ -0.27
NUP54-214ENST00000514307 VSIG4Q9Y279 399 aa13.35□□□□□ -0.27
NUP54-214ENST00000514307 TRGV10A0A0A0MS01 117 aa13.34□□□□□ -0.27
NUP54-214ENST00000514307 A0A0B4J293 547 aa13.34□□□□□ -0.27
NUP54-214ENST00000514307 NPIPB11E5RHQ5 1161 aa13.34□□□□□ -0.27
NUP54-214ENST00000514307 TNFRSF13BO14836 293 aaPredicted RBP13.34□□□□□ -0.27
NUP54-214ENST00000514307 TMPRSS2O15393 492 aa13.34□□□□□ -0.27
NUP54-214ENST00000514307 F12P00748 615 aaPredicted RBP13.34□□□□□ -0.27
NUP54-214ENST00000514307 PPYP01298 95 aa13.34□□□□□ -0.27
NUP54-214ENST00000514307 VSIG10L2P0DP72 767 aa13.34□□□□□ -0.27
NUP54-214ENST00000514307 DAOP14920 347 aa13.34□□□□□ -0.27
NUP54-214ENST00000514307 CEACAM6P40199 344 aa13.34□□□□□ -0.27
NUP54-214ENST00000514307 EDDM3BP56851 147 aa13.34□□□□□ -0.27
NUP54-214ENST00000514307 MEF2CQ06413 473 aaPredicted RBP13.34□□□□□ -0.27
NUP54-214ENST00000514307 ZNF626Q68DY1 528 aa13.34□□□□□ -0.27
NUP54-214ENST00000514307 Q6ZPA2 131 aa13.34□□□□□ -0.27
NUP54-214ENST00000514307 FAM185AQ8N0U4 392 aa13.34□□□□□ -0.27
NUP54-214ENST00000514307 IL1F10Q8WWZ1 152 aa13.34□□□□□ -0.27
NUP54-214ENST00000514307 NINJ1Q92982 152 aa13.34□□□□□ -0.27
NUP54-214ENST00000514307 ARL11Q969Q4 196 aa13.34□□□□□ -0.27
NUP54-214ENST00000514307 CABLES2Q9BTV7 478 aa13.34□□□□□ -0.27
NUP54-214ENST00000514307 OR2W1Q9Y3N9 320 aa13.34□□□□□ -0.27
NUP54-214ENST00000514307 hADV38S2A0JD32 116 aa13.33□□□□□ -0.28
NUP54-214ENST00000514307 GPR37O15354 613 aa13.33□□□□□ -0.28
NUP54-214ENST00000514307 ADAM20O43506 726 aa13.33□□□□□ -0.28
NUP54-214ENST00000514307 TUSC2O75896 110 aa13.33□□□□□ -0.28
NUP54-214ENST00000514307 HEXAP06865 529 aa13.33□□□□□ -0.28
NUP54-214ENST00000514307 HNRNPCP07910 306 aaKnown RBP eCLIP13.33□□□□□ -0.28
NUP54-214ENST00000514307 AADACP22760 399 aa13.33□□□□□ -0.28
NUP54-214ENST00000514307 NFYAP23511 347 aaPredicted RBP13.33□□□□□ -0.28
NUP54-214ENST00000514307 HTD2P86397 168 aa13.33□□□□□ -0.28
NUP54-214ENST00000514307 HOXA4Q00056 320 aaPredicted RBP13.33□□□□□ -0.28
NUP54-214ENST00000514307 DHODHQ02127 395 aa13.33□□□□□ -0.28
NUP54-214ENST00000514307 LYG2Q86SG7 212 aa13.33□□□□□ -0.28
NUP54-214ENST00000514307 TGIF2LYQ8IUE0 185 aa13.33□□□□□ -0.28
NUP54-214ENST00000514307 SGPP2Q8IWX5 399 aa13.33□□□□□ -0.28
NUP54-214ENST00000514307 C12orf45Q8N5I9 185 aaPredicted RBP13.33□□□□□ -0.28
NUP54-214ENST00000514307 CCDC71LQ8N9Z2 235 aa13.33□□□□□ -0.28
NUP54-214ENST00000514307 CORO2AQ92828 525 aa13.33□□□□□ -0.28
NUP54-214ENST00000514307 MRGPRFQ96AM1 343 aa13.33□□□□□ -0.28
NUP54-214ENST00000514307 C14orf79Q96F83 325 aa13.33□□□□□ -0.28
NUP54-214ENST00000514307 SEC22CQ9BRL7 303 aa13.33□□□□□ -0.28
NUP54-214ENST00000514307 RTBDNQ9BSG5 229 aaPredicted RBP13.33□□□□□ -0.28
NUP54-214ENST00000514307 TMPRSS13Q9BYE2 586 aa13.33□□□□□ -0.28
NUP54-214ENST00000514307 SLC25A10Q9UBX3 287 aaPredicted RBP13.33□□□□□ -0.28
NUP54-214ENST00000514307 HCFC1P51610 2035 aa13.33□□□□□ -0.28
NUP54-214ENST00000514307 MYO18BQ8IUG5 2567 aa13.32□□□□□ -0.28
NUP54-214ENST00000514307 TRAV39A0A0B4J263 110 aa13.32□□□□□ -0.28
NUP54-214ENST00000514307 C12orf77C9JDV5 145 aa13.32□□□□□ -0.28
NUP54-214ENST00000514307 HBZP02008 142 aa13.32□□□□□ -0.28
NUP54-214ENST00000514307 TFF1P04155 84 aa13.32□□□□□ -0.28
NUP54-214ENST00000514307 NDUFB7P17568 137 aa13.32□□□□□ -0.28
NUP54-214ENST00000514307 LUMP51884 338 aaPredicted RBP13.32□□□□□ -0.28
NUP54-214ENST00000514307 EFNA4P52798 201 aa13.32□□□□□ -0.28
NUP54-214ENST00000514307 FXYD4P59646 89 aa13.32□□□□□ -0.28
NUP54-214ENST00000514307 TMEM30BQ3MIR4 351 aa13.32□□□□□ -0.28
NUP54-214ENST00000514307 CMTM1Q8IZ96 169 aa13.32□□□□□ -0.28
NUP54-214ENST00000514307 H1FOOQ8IZA3 346 aaPredicted RBP13.32□□□□□ -0.28
NUP54-214ENST00000514307 PRR18Q8N4B5 295 aa13.32□□□□□ -0.28
NUP54-214ENST00000514307 SPICQ8N5J4 248 aa13.32□□□□□ -0.28
NUP54-214ENST00000514307 MRGPRDQ8TDS7 321 aa13.32□□□□□ -0.28
NUP54-214ENST00000514307 TOMM40LQ969M1 308 aa13.32□□□□□ -0.28
NUP54-214ENST00000514307 PHB2Q99623 299 aa13.32□□□□□ -0.28
NUP54-214ENST00000514307 TMEM246Q9BRR3 403 aa13.32□□□□□ -0.28
NUP54-214ENST00000514307 RSRP1Q9BUV0 290 aa13.32□□□□□ -0.28
NUP54-214ENST00000514307 CHODLQ9H9P2 273 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms