RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 FAM185AQ8N0U4 392 aa7.92□□□□□ -1.14
LIMCH1-215ENST00000512632 GNPNAT1Q96EK6 184 aaPredicted RBP7.92□□□□□ -1.14
LIMCH1-215ENST00000512632 NOSIPQ9Y314 301 aaKnown RBP7.92□□□□□ -1.14
LIMCH1-215ENST00000512632 CEP192Q8TEP8 1941 aa7.92□□□□□ -1.14
LIMCH1-215ENST00000512632 TRAPPC2LH3BP13 241 aa7.92□□□□□ -1.14
LIMCH1-215ENST00000512632 PGLYRP1O75594 196 aaPredicted RBP7.92□□□□□ -1.14
LIMCH1-215ENST00000512632 SERPINE2P07093 398 aa7.92□□□□□ -1.14
LIMCH1-215ENST00000512632 HOXA5P20719 270 aa7.92□□□□□ -1.14
LIMCH1-215ENST00000512632 UCP1P25874 307 aa7.92□□□□□ -1.14
LIMCH1-215ENST00000512632 PLPPR1Q8TBJ4 325 aa7.92□□□□□ -1.14
LIMCH1-215ENST00000512632 GPR146Q96CH1 333 aa7.92□□□□□ -1.14
LIMCH1-215ENST00000512632 TVP23CQ96ET8 276 aa7.92□□□□□ -1.14
LIMCH1-215ENST00000512632 YPEL4Q96NS1 127 aa7.92□□□□□ -1.14
LIMCH1-215ENST00000512632 ADAMTS20P59510 1910 aa7.92□□□□□ -1.14
LIMCH1-215ENST00000512632 NAPSAO96009 420 aa7.92□□□□□ -1.14
LIMCH1-215ENST00000512632 S100A2P29034 98 aa7.92□□□□□ -1.14
LIMCH1-215ENST00000512632 Q6ZRM9 215 aa7.92□□□□□ -1.14
LIMCH1-215ENST00000512632 OR10D4PQ8NGN7 298 aa7.92□□□□□ -1.14
LIMCH1-215ENST00000512632 ZNF552Q9H707 407 aaPredicted RBP7.92□□□□□ -1.14
LIMCH1-215ENST00000512632 ZNF665Q9H7R5 613 aa7.92□□□□□ -1.14
LIMCH1-215ENST00000512632 RPRMQ9NS64 109 aa7.92□□□□□ -1.14
LIMCH1-215ENST00000512632 TAAR3PQ9P1P4 343 aa7.92□□□□□ -1.14
LIMCH1-215ENST00000512632 ZNF391Q9UJN7 358 aa7.92□□□□□ -1.14
LIMCH1-215ENST00000512632 RBM7Q9Y580 266 aaKnown RBP7.92□□□□□ -1.14
LIMCH1-215ENST00000512632 ARGFXA6NJG6 315 aa7.91□□□□□ -1.14
LIMCH1-215ENST00000512632 LRRC3CA6NJW4 275 aa7.91□□□□□ -1.14
LIMCH1-215ENST00000512632 SLC34A2O95436 690 aa7.91□□□□□ -1.14
LIMCH1-215ENST00000512632 IGHV2-70P01814 119 aa7.91□□□□□ -1.14
LIMCH1-215ENST00000512632 METTL15P1P0C7V9 234 aa7.91□□□□□ -1.14
LIMCH1-215ENST00000512632 SPINK14Q6IE38 97 aa7.91□□□□□ -1.14
LIMCH1-215ENST00000512632 VASH2Q86V25 355 aa7.91□□□□□ -1.14
LIMCH1-215ENST00000512632 GPR61Q9BZJ8 451 aa7.91□□□□□ -1.14
LIMCH1-215ENST00000512632 VSIRQ9H7M9 311 aa7.91□□□□□ -1.14
LIMCH1-215ENST00000512632 TINAGQ9UJW2 476 aa7.91□□□□□ -1.14
LIMCH1-215ENST00000512632 A0A1B0GW64 132 aa7.91□□□□□ -1.14
LIMCH1-215ENST00000512632 LY86O95711 162 aa7.91□□□□□ -1.14
LIMCH1-215ENST00000512632 PSG2P11465 335 aa7.91□□□□□ -1.14
LIMCH1-215ENST00000512632 TAS2R30P59541 319 aa7.91□□□□□ -1.14
LIMCH1-215ENST00000512632 FGF12P61328 243 aa7.91□□□□□ -1.14
LIMCH1-215ENST00000512632 TLE4Q04727 773 aa7.91□□□□□ -1.14
LIMCH1-215ENST00000512632 Q0VFX4 171 aa7.91□□□□□ -1.14
LIMCH1-215ENST00000512632 TDHQ8IZJ6 230 aa7.91□□□□□ -1.14
LIMCH1-215ENST00000512632 ZNF610Q8N9Z0 462 aa7.91□□□□□ -1.14
LIMCH1-215ENST00000512632 CLDND2Q8NHS1 167 aa7.91□□□□□ -1.14
LIMCH1-215ENST00000512632 C1QTNF5Q9BXJ0 243 aa7.91□□□□□ -1.14
LIMCH1-215ENST00000512632 WDFY4Q6ZS81 3184 aa7.91□□□□□ -1.14
LIMCH1-215ENST00000512632 RIPPLY2Q5TAB7 128 aa7.91□□□□□ -1.14
LIMCH1-215ENST00000512632 STX12Q86Y82 276 aa7.91□□□□□ -1.14
LIMCH1-215ENST00000512632 KCNE4Q8WWG9 221 aa7.91□□□□□ -1.14
LIMCH1-215ENST00000512632 HIST1H2AAQ96QV6 131 aa7.91□□□□□ -1.14
LIMCH1-215ENST00000512632 REPIN1Q9BWE0 567 aaKnown RBP7.91□□□□□ -1.14
LIMCH1-215ENST00000512632 ZNF503-AS2A6NEH8 195 aa7.91□□□□□ -1.14
LIMCH1-215ENST00000512632 DNPH1O43598 174 aa7.91□□□□□ -1.14
LIMCH1-215ENST00000512632 LILRA1O75019 489 aa7.91□□□□□ -1.14
LIMCH1-215ENST00000512632 CNOT4O95628 575 aaKnown RBP7.91□□□□□ -1.14
LIMCH1-215ENST00000512632 IFNA5P01569 189 aa7.91□□□□□ -1.14
LIMCH1-215ENST00000512632 F2RP25116 425 aa7.91□□□□□ -1.14
LIMCH1-215ENST00000512632 CDX1P47902 265 aaPredicted RBP7.91□□□□□ -1.14
LIMCH1-215ENST00000512632 KRTAP27-1Q3LI81 207 aa7.91□□□□□ -1.14
LIMCH1-215ENST00000512632 OR2B11Q5JQS5 317 aa7.91□□□□□ -1.14
LIMCH1-215ENST00000512632 ZDHHC23Q8IYP9 409 aa7.91□□□□□ -1.14
LIMCH1-215ENST00000512632 PSMF1Q92530 271 aa7.91□□□□□ -1.14
LIMCH1-215ENST00000512632 ADGRG7Q96K78 797 aa7.91□□□□□ -1.14
LIMCH1-215ENST00000512632 ATP5SQ99766 215 aa7.91□□□□□ -1.14
LIMCH1-215ENST00000512632 SMDT1Q9H4I9 107 aa7.91□□□□□ -1.14
LIMCH1-215ENST00000512632 GAR1Q9NY12 217 aaKnown RBP7.91□□□□□ -1.14
LIMCH1-215ENST00000512632 PRRC2CQ9Y520 2896 aaKnown RBP7.91□□□□□ -1.14
LIMCH1-215ENST00000512632 KIR2DS1A0A191URI9 304 aa7.9□□□□□ -1.14
LIMCH1-215ENST00000512632 BTBD17A6NE02 478 aa7.9□□□□□ -1.14
LIMCH1-215ENST00000512632 CELA3AP09093 270 aa7.9□□□□□ -1.14
LIMCH1-215ENST00000512632 KIR2DS4P43632 304 aa7.9□□□□□ -1.14
LIMCH1-215ENST00000512632 KIR2DS1Q14954 304 aa7.9□□□□□ -1.14
LIMCH1-215ENST00000512632 ZNF506Q5JVG8 444 aa7.9□□□□□ -1.14
LIMCH1-215ENST00000512632 PCSK4Q6UW60 755 aa7.9□□□□□ -1.14
LIMCH1-215ENST00000512632 TUSC5Q8IXB3 177 aa7.9□□□□□ -1.14
LIMCH1-215ENST00000512632 PFDN5Q99471 154 aa7.9□□□□□ -1.14
LIMCH1-215ENST00000512632 PPP1R3CQ9UQK1 317 aa7.9□□□□□ -1.14
LIMCH1-215ENST00000512632 SIT1Q9Y3P8 196 aa7.9□□□□□ -1.14
LIMCH1-215ENST00000512632 RNF115Q9Y4L5 304 aa7.9□□□□□ -1.14
LIMCH1-215ENST00000512632 ATP23Q9Y6H3 246 aa7.9□□□□□ -1.14
LIMCH1-215ENST00000512632 HIST1H2BKO60814 126 aa7.9□□□□□ -1.14
LIMCH1-215ENST00000512632 TUSC2O75896 110 aa7.9□□□□□ -1.14
LIMCH1-215ENST00000512632 HSPB1P04792 205 aaKnown RBP7.9□□□□□ -1.14
LIMCH1-215ENST00000512632 HIST1H2BJP06899 126 aa7.9□□□□□ -1.14
LIMCH1-215ENST00000512632 HIST1H2BOP23527 126 aa7.9□□□□□ -1.14
LIMCH1-215ENST00000512632 HIST1H2BBP33778 126 aa7.9□□□□□ -1.14
LIMCH1-215ENST00000512632 HIST1H2BDP58876 126 aa7.9□□□□□ -1.14
LIMCH1-215ENST00000512632 HIST1H2BCP62807 126 aa7.9□□□□□ -1.14
LIMCH1-215ENST00000512632 HLA-DRB3P79483 266 aa7.9□□□□□ -1.14
LIMCH1-215ENST00000512632 HIST2H2BEQ16778 126 aa7.9□□□□□ -1.14
LIMCH1-215ENST00000512632 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.9□□□□□ -1.14
LIMCH1-215ENST00000512632 C1QL4Q86Z23 238 aa7.9□□□□□ -1.14
LIMCH1-215ENST00000512632 SNIP1Q8TAD8 396 aaKnown RBP7.9□□□□□ -1.14
LIMCH1-215ENST00000512632 HIST1H2BHQ93079 126 aa7.9□□□□□ -1.14
LIMCH1-215ENST00000512632 HIST1H2BNQ99877 126 aa7.9□□□□□ -1.14
LIMCH1-215ENST00000512632 HIST1H2BMQ99879 126 aa7.9□□□□□ -1.14
LIMCH1-215ENST00000512632 CACNG5Q9UF02 275 aa7.9□□□□□ -1.14
LIMCH1-215ENST00000512632 DMDP11532 3685 aa7.9□□□□□ -1.15
LIMCH1-215ENST00000512632 CD200P41217 278 aa7.9□□□□□ -1.15
LIMCH1-215ENST00000512632 ARL16Q0P5N6 197 aa7.9□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms