RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 EMDP50402 254 aa9.89□□□□□ -0.83
LIMCH1-208ENST00000508501 GNB2P62879 340 aa9.89□□□□□ -0.83
LIMCH1-208ENST00000508501 CDKN3Q16667 212 aa9.89□□□□□ -0.83
LIMCH1-208ENST00000508501 ALKAL1Q6UXT8 129 aa9.89□□□□□ -0.83
LIMCH1-208ENST00000508501 ZNF788Q6ZQV5 615 aa9.89□□□□□ -0.83
LIMCH1-208ENST00000508501 STPG3Q8N7X2 389 aa9.89□□□□□ -0.83
LIMCH1-208ENST00000508501 RBKSQ9H477 322 aa9.89□□□□□ -0.83
LIMCH1-208ENST00000508501 SOCS7O14512 581 aa9.89□□□□□ -0.83
LIMCH1-208ENST00000508501 RPL34P49207 117 aaKnown RBP9.89□□□□□ -0.83
LIMCH1-208ENST00000508501 TMEM50BP56557 158 aa9.89□□□□□ -0.83
LIMCH1-208ENST00000508501 LURAP1LQ8IV03 231 aa9.89□□□□□ -0.83
LIMCH1-208ENST00000508501 C17orf47Q8NEP4 570 aa9.89□□□□□ -0.83
LIMCH1-208ENST00000508501 SPACA9Q96E40 222 aaPredicted RBP9.89□□□□□ -0.83
LIMCH1-208ENST00000508501 MRAP2Q96G30 205 aa9.89□□□□□ -0.83
LIMCH1-208ENST00000508501 CXXC4Q9H2H0 198 aa9.89□□□□□ -0.83
LIMCH1-208ENST00000508501 HIGD1AQ9Y241 93 aa9.89□□□□□ -0.83
LIMCH1-208ENST00000508501 NKX2-6A6NCS4 301 aa9.88□□□□□ -0.83
LIMCH1-208ENST00000508501 SEC11AP67812 179 aa9.88□□□□□ -0.83
LIMCH1-208ENST00000508501 ABHD3Q8WU67 409 aa9.88□□□□□ -0.83
LIMCH1-208ENST00000508501 NRSN2Q9GZP1 204 aa9.88□□□□□ -0.83
LIMCH1-208ENST00000508501 KCNE3Q9Y6H6 103 aa9.88□□□□□ -0.83
LIMCH1-208ENST00000508501 PHRF1Q9P1Y6 1649 aaKnown RBP9.88□□□□□ -0.83
LIMCH1-208ENST00000508501 LOC105371267A0A1B0GV96 52 aa9.88□□□□□ -0.83
LIMCH1-208ENST00000508501 ZNF683Q8IZ20 524 aa9.88□□□□□ -0.83
LIMCH1-208ENST00000508501 FLYWCH2Q96CP2 140 aaKnown RBP9.88□□□□□ -0.83
LIMCH1-208ENST00000508501 TRBV23-1A0A0A0MS06 115 aa9.88□□□□□ -0.83
LIMCH1-208ENST00000508501 SBK3P0C264 359 aa9.88□□□□□ -0.83
LIMCH1-208ENST00000508501 SRIP30626 198 aa9.88□□□□□ -0.83
LIMCH1-208ENST00000508501 ZNF137PP52743 207 aa9.88□□□□□ -0.83
LIMCH1-208ENST00000508501 BATF2Q8N1L9 274 aa9.88□□□□□ -0.83
LIMCH1-208ENST00000508501 KISS1RQ969F8 398 aaPredicted RBP9.88□□□□□ -0.83
LIMCH1-208ENST00000508501 ZNF414Q96IQ9 312 aa9.88□□□□□ -0.83
LIMCH1-208ENST00000508501 SMIM14Q96QK8 99 aa9.88□□□□□ -0.83
LIMCH1-208ENST00000508501 HDHD3Q9BSH5 251 aaPredicted RBP9.88□□□□□ -0.83
LIMCH1-208ENST00000508501 MED19A0JLT2 244 aaPredicted RBP9.88□□□□□ -0.83
LIMCH1-208ENST00000508501 NDUFB4O95168 129 aa9.88□□□□□ -0.83
LIMCH1-208ENST00000508501 MPZL1O95297 269 aa9.88□□□□□ -0.83
LIMCH1-208ENST00000508501 DANCRP0C864 163 aa9.88□□□□□ -0.83
LIMCH1-208ENST00000508501 CD27P26842 260 aa9.88□□□□□ -0.83
LIMCH1-208ENST00000508501 OR3A4PP47883 348 aa9.88□□□□□ -0.83
LIMCH1-208ENST00000508501 RPS11P62280 158 aaKnown RBP eCLIP9.88□□□□□ -0.83
LIMCH1-208ENST00000508501 FOXF1Q12946 379 aa9.88□□□□□ -0.83
LIMCH1-208ENST00000508501 LINC01559Q495D7 138 aa9.88□□□□□ -0.83
LIMCH1-208ENST00000508501 GAPTQ8N292 157 aa9.88□□□□□ -0.83
LIMCH1-208ENST00000508501 TWSG1Q9GZX9 223 aa9.88□□□□□ -0.83
LIMCH1-208ENST00000508501 H7C2G1 150 aa9.87□□□□□ -0.83
LIMCH1-208ENST00000508501 HLA-DQB1P01920 261 aa9.87□□□□□ -0.83
LIMCH1-208ENST00000508501 PRSS8Q16651 343 aa9.87□□□□□ -0.83
LIMCH1-208ENST00000508501 HIKESHIQ53FT3 197 aa9.87□□□□□ -0.83
LIMCH1-208ENST00000508501 FBLN7Q53RD9 439 aa9.87□□□□□ -0.83
LIMCH1-208ENST00000508501 GVQW1Q8N7I0 195 aa9.87□□□□□ -0.83
LIMCH1-208ENST00000508501 PLSCR2Q9NRY7 297 aa9.87□□□□□ -0.83
LIMCH1-208ENST00000508501 H0Y980 276 aa9.87□□□□□ -0.83
LIMCH1-208ENST00000508501 FFAR1O14842 300 aa9.87□□□□□ -0.83
LIMCH1-208ENST00000508501 OTPQ5XKR4 325 aa9.87□□□□□ -0.83
LIMCH1-208ENST00000508501 OR4C3Q8NH37 302 aa9.87□□□□□ -0.83
LIMCH1-208ENST00000508501 OR6X1Q8NH79 312 aa9.87□□□□□ -0.83
LIMCH1-208ENST00000508501 LTBP3Q9NS15 1303 aa9.87□□□□□ -0.83
LIMCH1-208ENST00000508501 ALG1L2C9J202 215 aa9.87□□□□□ -0.83
LIMCH1-208ENST00000508501 HIST1H1AQ02539 215 aaPredicted RBP9.87□□□□□ -0.83
LIMCH1-208ENST00000508501 GAGE2BQ13066 116 aa9.87□□□□□ -0.83
LIMCH1-208ENST00000508501 GAGE2EQ4V326 116 aa9.87□□□□□ -0.83
LIMCH1-208ENST00000508501 C1orf174Q8IYL3 243 aa9.87□□□□□ -0.83
LIMCH1-208ENST00000508501 NUDT10Q8NFP7 164 aa9.87□□□□□ -0.83
LIMCH1-208ENST00000508501 SLC37A2Q8TED4 501 aa9.87□□□□□ -0.83
LIMCH1-208ENST00000508501 FBXO17Q96EF6 278 aa9.87□□□□□ -0.83
LIMCH1-208ENST00000508501 ANKRD10Q9NXR5 420 aa9.87□□□□□ -0.83
LIMCH1-208ENST00000508501 GAGE2DQ9UEU5 116 aa9.87□□□□□ -0.83
LIMCH1-208ENST00000508501 MRM2Q9UI43 246 aaKnown RBP9.87□□□□□ -0.83
LIMCH1-208ENST00000508501 A0A1B0GTH9 108 aa9.87□□□□□ -0.83
LIMCH1-208ENST00000508501 FAM157BP0CG42 384 aa9.87□□□□□ -0.83
LIMCH1-208ENST00000508501 C6orf15Q6UXA7 325 aaPredicted RBP9.87□□□□□ -0.83
LIMCH1-208ENST00000508501 LYZL2Q7Z4W2 148 aa9.87□□□□□ -0.83
LIMCH1-208ENST00000508501 PNKDQ8N490 385 aa9.87□□□□□ -0.83
LIMCH1-208ENST00000508501 FADS6Q8N9I5 356 aa9.87□□□□□ -0.83
LIMCH1-208ENST00000508501 SSMEM1Q8WWF3 244 aa9.87□□□□□ -0.83
LIMCH1-208ENST00000508501 MGST2Q99735 147 aa9.87□□□□□ -0.83
LIMCH1-208ENST00000508501 IFITM2Q01629 132 aa9.86□□□□□ -0.83
LIMCH1-208ENST00000508501 ZFAND6Q6FIF0 208 aa9.86□□□□□ -0.83
LIMCH1-208ENST00000508501 LINC00696Q6ZRV3 163 aa9.86□□□□□ -0.83
LIMCH1-208ENST00000508501 MRPL43Q8N983 215 aaKnown RBP9.86□□□□□ -0.83
LIMCH1-208ENST00000508501 FAM90A10PA6NDY2 464 aa9.86□□□□□ -0.83
LIMCH1-208ENST00000508501 FAM90A18PA6NE21 464 aa9.86□□□□□ -0.83
LIMCH1-208ENST00000508501 FAM90A16PA6NEW6 464 aa9.86□□□□□ -0.83
LIMCH1-208ENST00000508501 FAM90A20PA6NIJ5 464 aa9.86□□□□□ -0.83
LIMCH1-208ENST00000508501 FAM90A8PA6NJQ4 464 aa9.86□□□□□ -0.83
LIMCH1-208ENST00000508501 FAM90A7PA6NKC0 464 aa9.86□□□□□ -0.83
LIMCH1-208ENST00000508501 FAM90A22PA8MWA6 464 aa9.86□□□□□ -0.83
LIMCH1-208ENST00000508501 FAM90A12PA8MX19 464 aa9.86□□□□□ -0.83
LIMCH1-208ENST00000508501 FAM90A5PA8MXJ8 464 aa9.86□□□□□ -0.83
LIMCH1-208ENST00000508501 FAM90A23PA8MXZ1 464 aa9.86□□□□□ -0.83
LIMCH1-208ENST00000508501 IGHV3-9P01782 118 aa9.86□□□□□ -0.83
LIMCH1-208ENST00000508501 F11P03951 625 aa9.86□□□□□ -0.83
LIMCH1-208ENST00000508501 FAM90A15PP0C7V4 464 aa9.86□□□□□ -0.83
LIMCH1-208ENST00000508501 FAM90A13PP0C7W8 464 aa9.86□□□□□ -0.83
LIMCH1-208ENST00000508501 FAM90A14PP0C7W9 464 aa9.86□□□□□ -0.83
LIMCH1-208ENST00000508501 FAM90A24PP0C7X0 464 aa9.86□□□□□ -0.83
LIMCH1-208ENST00000508501 FSTP19883 344 aa9.86□□□□□ -0.83
LIMCH1-208ENST00000508501 TIMM23BQ5SRD1 257 aa9.86□□□□□ -0.83
LIMCH1-208ENST00000508501 POC1AQ8NBT0 407 aa9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms