RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 INAFM1C9JVW0 142 aa9.76□□□□□ -0.85
CUX1-210ENST00000497815 XRCC3O43542 346 aa9.76□□□□□ -0.85
CUX1-210ENST00000497815 MMP23AO75900 390 aa9.76□□□□□ -0.85
CUX1-210ENST00000497815 MMP9P14780 707 aa9.76□□□□□ -0.85
CUX1-210ENST00000497815 COX7A1P24310 79 aa9.76□□□□□ -0.85
CUX1-210ENST00000497815 TALDO1P37837 337 aa9.76□□□□□ -0.85
CUX1-210ENST00000497815 MNDAP41218 407 aa9.76□□□□□ -0.85
CUX1-210ENST00000497815 TAS2R20P59543 309 aa9.76□□□□□ -0.85
CUX1-210ENST00000497815 GNG2P59768 71 aa9.76□□□□□ -0.85
CUX1-210ENST00000497815 KLRD1Q13241 179 aa9.76□□□□□ -0.85
CUX1-210ENST00000497815 ARL6IP1Q15041 203 aa9.76□□□□□ -0.85
CUX1-210ENST00000497815 C17orf58Q2M2W7 97 aa9.76□□□□□ -0.85
CUX1-210ENST00000497815 ZNF260Q3ZCT1 412 aa9.76□□□□□ -0.85
CUX1-210ENST00000497815 Q6ZPA2 131 aa9.76□□□□□ -0.85
CUX1-210ENST00000497815 C5orf24Q7Z6I8 188 aa9.76□□□□□ -0.85
CUX1-210ENST00000497815 GAPTQ8N292 157 aa9.76□□□□□ -0.85
CUX1-210ENST00000497815 C11orf42Q8N5U0 333 aa9.76□□□□□ -0.85
CUX1-210ENST00000497815 NUDCD2Q8WVJ2 157 aa9.76□□□□□ -0.85
CUX1-210ENST00000497815 MAFIPQ8WZ33 124 aa9.76□□□□□ -0.85
CUX1-210ENST00000497815 CORO2AQ92828 525 aa9.76□□□□□ -0.85
CUX1-210ENST00000497815 LHX4Q969G2 390 aa9.76□□□□□ -0.85
CUX1-210ENST00000497815 ARL11Q969Q4 196 aa9.76□□□□□ -0.85
CUX1-210ENST00000497815 CMTM3Q96MX0 182 aa9.76□□□□□ -0.85
CUX1-210ENST00000497815 NCOR1P1Q9H4R4 102 aa9.76□□□□□ -0.85
CUX1-210ENST00000497815 METTL8Q9H825 291 aaKnown RBP9.76□□□□□ -0.85
CUX1-210ENST00000497815 BATF3Q9NR55 127 aa9.76□□□□□ -0.85
CUX1-210ENST00000497815 TAS2R3Q9NYW6 316 aa9.76□□□□□ -0.85
CUX1-210ENST00000497815 KCNIP1Q9NZI2 227 aa9.76□□□□□ -0.85
CUX1-210ENST00000497815 EXTL2Q9UBQ6 330 aa9.76□□□□□ -0.85
CUX1-210ENST00000497815 ARHGAP32A7KAX9 2087 aa9.76□□□□□ -0.85
CUX1-210ENST00000497815 HIVEP1P15822 2718 aa9.75□□□□□ -0.85
CUX1-210ENST00000497815 TRAV40A0A0B4J280 105 aa9.75□□□□□ -0.85
CUX1-210ENST00000497815 KBTBD11-OT1A0A1B0GTJ5 212 aa9.75□□□□□ -0.85
CUX1-210ENST00000497815 A0A1W2PRD5 423 aa9.75□□□□□ -0.85
CUX1-210ENST00000497815 A0A1W2PRF3 423 aa9.75□□□□□ -0.85
CUX1-210ENST00000497815 A0A1W2PRM7 423 aa9.75□□□□□ -0.85
CUX1-210ENST00000497815 C17orf98A8MV24 154 aa9.75□□□□□ -0.85
CUX1-210ENST00000497815 C12orf77C9JDV5 145 aa9.75□□□□□ -0.85
CUX1-210ENST00000497815 CLPXO76031 633 aa9.75□□□□□ -0.85
CUX1-210ENST00000497815 NAPSAO96009 420 aa9.75□□□□□ -0.85
CUX1-210ENST00000497815 GSTP1P09211 210 aaKnown RBP9.75□□□□□ -0.85
CUX1-210ENST00000497815 IGHV1-8P0DP01 117 aa9.75□□□□□ -0.85
CUX1-210ENST00000497815 HNF1AP20823 631 aa9.75□□□□□ -0.85
CUX1-210ENST00000497815 NFYBP25208 207 aa9.75□□□□□ -0.85
CUX1-210ENST00000497815 SRP14P37108 136 aaKnown RBP9.75□□□□□ -0.85
CUX1-210ENST00000497815 GDNFP39905 211 aa9.75□□□□□ -0.85
CUX1-210ENST00000497815 C6orf183Q5T699 404 aa9.75□□□□□ -0.85
CUX1-210ENST00000497815 HACD4Q5VWC8 232 aa9.75□□□□□ -0.85
CUX1-210ENST00000497815 CNIH2Q6PI25 160 aa9.75□□□□□ -0.85
CUX1-210ENST00000497815 BAIAP2L2Q6UXY1 529 aa9.75□□□□□ -0.85
CUX1-210ENST00000497815 C1orf122Q6ZSJ8 110 aa9.75□□□□□ -0.85
CUX1-210ENST00000497815 SNX29P2Q8IUI4 249 aa9.75□□□□□ -0.85
CUX1-210ENST00000497815 OR1L1Q8NH94 360 aa9.75□□□□□ -0.85
CUX1-210ENST00000497815 GCDHQ92947 438 aaPredicted RBP9.75□□□□□ -0.85
CUX1-210ENST00000497815 UPRTQ96BW1 309 aa9.75□□□□□ -0.85
CUX1-210ENST00000497815 DMRTB1Q96MA1 342 aa9.75□□□□□ -0.85
CUX1-210ENST00000497815 SUCNR1Q9BXA5 334 aa9.75□□□□□ -0.85
CUX1-210ENST00000497815 NXF2Q9GZY0 626 aaKnown RBP9.75□□□□□ -0.85
CUX1-210ENST00000497815 RIMS4Q9H426 269 aaPredicted RBP9.75□□□□□ -0.85
CUX1-210ENST00000497815 AUNIPQ9H7T9 357 aa9.75□□□□□ -0.85
CUX1-210ENST00000497815 TAF9BQ9HBM6 251 aa9.75□□□□□ -0.85
CUX1-210ENST00000497815 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP9.75□□□□□ -0.853e-6■■□□□ 13.5
CUX1-210ENST00000497815 ZNF230Q9UIE0 474 aaPredicted RBP9.75□□□□□ -0.85
CUX1-210ENST00000497815 ADAM30Q9UKF2 790 aa9.75□□□□□ -0.85
CUX1-210ENST00000497815 C15orf65H3BRN8 121 aa9.74□□□□□ -0.85
CUX1-210ENST00000497815 SSX5O60225 188 aa9.74□□□□□ -0.85
CUX1-210ENST00000497815 FCER2P06734 321 aa9.74□□□□□ -0.85
CUX1-210ENST00000497815 FCGR3AP08637 254 aa9.74□□□□□ -0.85
CUX1-210ENST00000497815 CGB3P0DN86 165 aa9.74□□□□□ -0.85
CUX1-210ENST00000497815 CGB7P0DN87 165 aa9.74□□□□□ -0.85
CUX1-210ENST00000497815 IGHV4-38-2P0DP08 117 aa9.74□□□□□ -0.85
CUX1-210ENST00000497815 HOXB4P17483 251 aaPredicted RBP9.74□□□□□ -0.85
CUX1-210ENST00000497815 GZMHP20718 246 aa9.74□□□□□ -0.85
CUX1-210ENST00000497815 PRTN3P24158 256 aa9.74□□□□□ -0.85
CUX1-210ENST00000497815 GUCA2AQ02747 115 aa9.74□□□□□ -0.85
CUX1-210ENST00000497815 PNLIPRP3Q17RR3 467 aa9.74□□□□□ -0.85
CUX1-210ENST00000497815 CNPY1Q3B7I2 92 aa9.74□□□□□ -0.85
CUX1-210ENST00000497815 RNASE12Q5GAN4 147 aaKnown RBP9.74□□□□□ -0.85
CUX1-210ENST00000497815 KLF17Q5JT82 389 aaPredicted RBP9.74□□□□□ -0.85
CUX1-210ENST00000497815 TRAT1Q6PIZ9 186 aa9.74□□□□□ -0.85
CUX1-210ENST00000497815 PNKDQ8N490 385 aa9.74□□□□□ -0.85
CUX1-210ENST00000497815 NANPQ8TBE9 248 aa9.74□□□□□ -0.85
CUX1-210ENST00000497815 LEAP2Q969E1 77 aa9.74□□□□□ -0.85
CUX1-210ENST00000497815 DIRAS2Q96HU8 199 aa9.74□□□□□ -0.85
CUX1-210ENST00000497815 ST6GALNAC5Q9BVH7 336 aa9.74□□□□□ -0.85
CUX1-210ENST00000497815 BEX2Q9BXY8 128 aa9.74□□□□□ -0.85
CUX1-210ENST00000497815 MMP27Q9H306 513 aa9.74□□□□□ -0.85
CUX1-210ENST00000497815 Q9N2K0 584 aa9.74□□□□□ -0.85
CUX1-210ENST00000497815 MBNL3Q9NUK0 354 aaKnown RBP9.74□□□□□ -0.85
CUX1-210ENST00000497815 IDI2-AS1Q9NZ38 188 aa9.74□□□□□ -0.85
CUX1-210ENST00000497815 SESN1Q9Y6P5 492 aa9.74□□□□□ -0.85
CUX1-210ENST00000497815 ACANP16112 2415 aa9.73□□□□□ -0.85
CUX1-210ENST00000497815 ZANQ9Y493 2812 aa9.73□□□□□ -0.85
CUX1-210ENST00000497815 MED13LQ71F56 2210 aa9.73□□□□□ -0.85
CUX1-210ENST00000497815 TRBV6-6A0A0A6YYG2 114 aa9.73□□□□□ -0.85
CUX1-210ENST00000497815 IGHV3-43A0A0B4J1X8 118 aa9.73□□□□□ -0.85
CUX1-210ENST00000497815 CENPVL3A0A0U1RRI6 287 aa9.73□□□□□ -0.85
CUX1-210ENST00000497815 MEIS3P1A6NDR6 274 aa9.73□□□□□ -0.85
CUX1-210ENST00000497815 RNASEK-C17orf49H0YIS7 233 aa9.73□□□□□ -0.85
CUX1-210ENST00000497815 SDCBPO00560 298 aaPredicted RBP9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms