RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 MALRD1Q5VYJ5 2156 aa8.48□□□□□ -1.05
SKA1-204ENST00000488454 MEX3AA1L020 520 aaKnown RBP8.47□□□□□ -1.05
SKA1-204ENST00000488454 ZNF729A6NN14 1252 aaPredicted RBP8.47□□□□□ -1.05
SKA1-204ENST00000488454 FOXI3A8MTJ6 420 aaPredicted RBP8.47□□□□□ -1.05
SKA1-204ENST00000488454 M0R1W7 72 aa8.47□□□□□ -1.05
SKA1-204ENST00000488454 XRCC3O43542 346 aa8.47□□□□□ -1.05
SKA1-204ENST00000488454 GSTP1P09211 210 aaKnown RBP8.47□□□□□ -1.05
SKA1-204ENST00000488454 HIST1H1DP16402 221 aaKnown RBP8.47□□□□□ -1.05
SKA1-204ENST00000488454 CDK2P24941 298 aa8.47□□□□□ -1.05
SKA1-204ENST00000488454 GLP1RP43220 463 aa8.47□□□□□ -1.05
SKA1-204ENST00000488454 PITPNAQ00169 270 aa8.47□□□□□ -1.05
SKA1-204ENST00000488454 ZNF273Q14593 569 aa8.47□□□□□ -1.05
SKA1-204ENST00000488454 CR1LQ2VPA4 569 aa8.47□□□□□ -1.05
SKA1-204ENST00000488454 TMEM69Q5SWH9 247 aa8.47□□□□□ -1.05
SKA1-204ENST00000488454 C6orf183Q5T699 404 aa8.47□□□□□ -1.05
SKA1-204ENST00000488454 TRAT1Q6PIZ9 186 aa8.47□□□□□ -1.05
SKA1-204ENST00000488454 OR4K15Q8NH41 348 aa8.47□□□□□ -1.05
SKA1-204ENST00000488454 MRGPRDQ8TDS7 321 aa8.47□□□□□ -1.05
SKA1-204ENST00000488454 DYRK2Q92630 601 aa8.47□□□□□ -1.05
SKA1-204ENST00000488454 WDFY2Q96P53 400 aa8.47□□□□□ -1.05
SKA1-204ENST00000488454 PCGF1Q9BSM1 259 aa8.47□□□□□ -1.05
SKA1-204ENST00000488454 SLIRPQ9GZT3 109 aaKnown RBP8.47□□□□□ -1.05
SKA1-204ENST00000488454 MMP27Q9H306 513 aa8.47□□□□□ -1.05
SKA1-204ENST00000488454 GSX1Q9H4S2 264 aaPredicted RBP8.47□□□□□ -1.05
SKA1-204ENST00000488454 METTL8Q9H825 291 aaKnown RBP8.47□□□□□ -1.05
SKA1-204ENST00000488454 C12orf4Q9NQ89 552 aa8.47□□□□□ -1.05
SKA1-204ENST00000488454 MRPS7Q9Y2R9 242 aaKnown RBP8.47□□□□□ -1.05
SKA1-204ENST00000488454 MED13LQ71F56 2210 aa8.46□□□□□ -1.05
SKA1-204ENST00000488454 KBTBD11-OT1A0A1B0GTJ5 212 aa8.46□□□□□ -1.06
SKA1-204ENST00000488454 MFNGO00587 321 aa8.46□□□□□ -1.06
SKA1-204ENST00000488454 CTDSP2O14595 271 aa8.46□□□□□ -1.06
SKA1-204ENST00000488454 SPINT2O43291 252 aa8.46□□□□□ -1.06
SKA1-204ENST00000488454 CLPXO76031 633 aa8.46□□□□□ -1.06
SKA1-204ENST00000488454 RBP4P02753 201 aa8.46□□□□□ -1.06
SKA1-204ENST00000488454 EIF4EP06730 217 aaKnown RBP8.46□□□□□ -1.06
SKA1-204ENST00000488454 CCL3L1P16619 93 aa8.46□□□□□ -1.06
SKA1-204ENST00000488454 ELK1P19419 428 aa8.46□□□□□ -1.06
SKA1-204ENST00000488454 PRTN3P24158 256 aa8.46□□□□□ -1.06
SKA1-204ENST00000488454 S100A5P33763 92 aa8.46□□□□□ -1.06
SKA1-204ENST00000488454 SRP14P37108 136 aaKnown RBP8.46□□□□□ -1.06
SKA1-204ENST00000488454 GNG2P59768 71 aa8.46□□□□□ -1.06
SKA1-204ENST00000488454 ERVFRD-1P60508 538 aa8.46□□□□□ -1.06
SKA1-204ENST00000488454 KRTAP1-1Q07627 177 aa8.46□□□□□ -1.06
SKA1-204ENST00000488454 PNLIPRP3Q17RR3 467 aa8.46□□□□□ -1.06
SKA1-204ENST00000488454 ZNF260Q3ZCT1 412 aa8.46□□□□□ -1.06
SKA1-204ENST00000488454 HACD4Q5VWC8 232 aa8.46□□□□□ -1.06
SKA1-204ENST00000488454 IZUMO1Q8IYV9 350 aa8.46□□□□□ -1.06
SKA1-204ENST00000488454 Q8N3U1 123 aa8.46□□□□□ -1.06
SKA1-204ENST00000488454 DTX3Q8N9I9 347 aa8.46□□□□□ -1.06
SKA1-204ENST00000488454 NANPQ8TBE9 248 aa8.46□□□□□ -1.06
SKA1-204ENST00000488454 C15orf40Q8WUR7 153 aa8.46□□□□□ -1.06
SKA1-204ENST00000488454 ARL11Q969Q4 196 aa8.46□□□□□ -1.06
SKA1-204ENST00000488454 DACT3Q96B18 629 aaPredicted RBP8.46□□□□□ -1.06
SKA1-204ENST00000488454 HEXA-AS1Q9H8Q6 139 aa8.46□□□□□ -1.06
SKA1-204ENST00000488454 EXTL2Q9UBQ6 330 aa8.46□□□□□ -1.06
SKA1-204ENST00000488454 OPN4Q9UHM6 478 aa8.46□□□□□ -1.06
SKA1-204ENST00000488454 MGAT4AQ9UM21 535 aa8.46□□□□□ -1.06
SKA1-204ENST00000488454 TRAV39A0A0B4J263 110 aa8.45□□□□□ -1.06
SKA1-204ENST00000488454 C17orf98A8MV24 154 aa8.45□□□□□ -1.06
SKA1-204ENST00000488454 ORC5O43913 435 aa8.45□□□□□ -1.06
SKA1-204ENST00000488454 NAPSAO96009 420 aa8.45□□□□□ -1.06
SKA1-204ENST00000488454 TAS2R20P59543 309 aa8.45□□□□□ -1.06
SKA1-204ENST00000488454 FAM120AOSQ5T036 256 aa8.45□□□□□ -1.06
SKA1-204ENST00000488454 FOXB2Q5VYV0 432 aa8.45□□□□□ -1.06
SKA1-204ENST00000488454 OLFML2AQ68BL7 652 aa8.45□□□□□ -1.06
SKA1-204ENST00000488454 NCR3LG1Q68D85 454 aa8.45□□□□□ -1.06
SKA1-204ENST00000488454 OR52W1Q6IF63 320 aa8.45□□□□□ -1.06
SKA1-204ENST00000488454 Q71RC1 249 aaPredicted RBP8.45□□□□□ -1.06
SKA1-204ENST00000488454 MOB1BQ7L9L4 216 aa8.45□□□□□ -1.06
SKA1-204ENST00000488454 VMO1Q7Z5L0 202 aa8.45□□□□□ -1.06
SKA1-204ENST00000488454 ZNF554Q86TJ5 538 aa8.45□□□□□ -1.06
SKA1-204ENST00000488454 GAPTQ8N292 157 aa8.45□□□□□ -1.06
SKA1-204ENST00000488454 PRR18Q8N4B5 295 aa8.45□□□□□ -1.06
SKA1-204ENST00000488454 OR13A1Q8NGR1 328 aa8.45□□□□□ -1.06
SKA1-204ENST00000488454 RFESDQ8TAC1 157 aa8.45□□□□□ -1.06
SKA1-204ENST00000488454 MRPL30Q8TCC3 161 aaKnown RBP8.45□□□□□ -1.06
SKA1-204ENST00000488454 DIRAS2Q96HU8 199 aa8.45□□□□□ -1.06
SKA1-204ENST00000488454 BEX2Q9BXY8 128 aa8.45□□□□□ -1.06
SKA1-204ENST00000488454 SIRPDQ9H106 197 aa8.45□□□□□ -1.06
SKA1-204ENST00000488454 AUNIPQ9H7T9 357 aa8.45□□□□□ -1.06
SKA1-204ENST00000488454 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP8.45□□□□□ -1.06
SKA1-204ENST00000488454 TMEM160Q9NX00 188 aa8.45□□□□□ -1.06
SKA1-204ENST00000488454 CALYQ9NYX4 217 aa8.45□□□□□ -1.06
SKA1-204ENST00000488454 KCNK7Q9Y2U2 307 aa8.45□□□□□ -1.06
SKA1-204ENST00000488454 A3GALT2U3KPV4 340 aa8.45□□□□□ -1.06
SKA1-204ENST00000488454 CR1P17927 2039 aa8.44□□□□□ -1.06
SKA1-204ENST00000488454 TRBV6-6A0A0A6YYG2 114 aa8.44□□□□□ -1.06
SKA1-204ENST00000488454 TMEM235A6NFC5 223 aa8.44□□□□□ -1.06
SKA1-204ENST00000488454 TPPPO94811 219 aa8.44□□□□□ -1.06
SKA1-204ENST00000488454 MELTFP08582 738 aa8.44□□□□□ -1.06
SKA1-204ENST00000488454 IGHV1-8P0DP01 117 aa8.44□□□□□ -1.06
SKA1-204ENST00000488454 MMP9P14780 707 aa8.44□□□□□ -1.06
SKA1-204ENST00000488454 RCC1P18754 421 aaPredicted RBP8.44□□□□□ -1.06
SKA1-204ENST00000488454 NFYBP25208 207 aa8.44□□□□□ -1.06
SKA1-204ENST00000488454 PRSS3P35030 304 aa8.44□□□□□ -1.06
SKA1-204ENST00000488454 CBX5P45973 191 aa8.44□□□□□ -1.06
SKA1-204ENST00000488454 DLX6P56179 175 aa8.44□□□□□ -1.06
SKA1-204ENST00000488454 LTC4SQ16873 150 aa8.44□□□□□ -1.06
SKA1-204ENST00000488454 C17orf58Q2M2W7 97 aa8.44□□□□□ -1.06
SKA1-204ENST00000488454 GPR157Q5UAW9 335 aa8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms