RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 LIPEQ05469 1076 aa5.94□□□□□ -1.46
USP54-211ENST00000474929 AESQ08117 197 aa5.94□□□□□ -1.46
USP54-211ENST00000474929 DGCR6Q14129 220 aa5.94□□□□□ -1.46
USP54-211ENST00000474929 C5orf64Q2M2E5 130 aa5.94□□□□□ -1.46
USP54-211ENST00000474929 DEFB114Q30KQ6 69 aa5.94□□□□□ -1.46
USP54-211ENST00000474929 CYBRD1Q53TN4 286 aa5.94□□□□□ -1.46
USP54-211ENST00000474929 COQ5Q5HYK3 327 aa5.94□□□□□ -1.46
USP54-211ENST00000474929 FAM209BQ5JX69 171 aa5.94□□□□□ -1.46
USP54-211ENST00000474929 RPL13AP3Q6NVV1 102 aa5.94□□□□□ -1.46
USP54-211ENST00000474929 TRPM8Q7Z2W7 1104 aa5.94□□□□□ -1.46
USP54-211ENST00000474929 LINC00471Q8N535 108 aa5.94□□□□□ -1.46
USP54-211ENST00000474929 ZNF511Q8NB15 262 aa5.94□□□□□ -1.46
USP54-211ENST00000474929 OR6K6Q8NGW6 343 aa5.94□□□□□ -1.46
USP54-211ENST00000474929 TMEM163Q8TC26 289 aa5.94□□□□□ -1.46
USP54-211ENST00000474929 SNAPC3Q92966 411 aa5.94□□□□□ -1.46
USP54-211ENST00000474929 TPD52L3Q96J77 140 aa5.94□□□□□ -1.46
USP54-211ENST00000474929 CCDC140Q96MF4 163 aa5.94□□□□□ -1.46
USP54-211ENST00000474929 INTS14Q96SY0 518 aa5.94□□□□□ -1.46
USP54-211ENST00000474929 RARRES2Q99969 163 aa5.94□□□□□ -1.46
USP54-211ENST00000474929 NDUFAF3Q9BU61 184 aa5.94□□□□□ -1.46
USP54-211ENST00000474929 OSBPL10Q9BXB5 764 aa5.94□□□□□ -1.46
USP54-211ENST00000474929 CMTM6Q9NX76 183 aa5.94□□□□□ -1.46
USP54-211ENST00000474929 SIRPB1O00241 398 aa5.93□□□□□ -1.46
USP54-211ENST00000474929 GSTA4O15217 222 aa5.93□□□□□ -1.46
USP54-211ENST00000474929 LYNP07948 512 aa5.93□□□□□ -1.46
USP54-211ENST00000474929 KDELR2P33947 212 aa5.93□□□□□ -1.46
USP54-211ENST00000474929 ADMP35318 185 aa5.93□□□□□ -1.46
USP54-211ENST00000474929 NUDT2P50583 147 aa5.93□□□□□ -1.46
USP54-211ENST00000474929 ALDH3A2P51648 485 aa5.93□□□□□ -1.46
USP54-211ENST00000474929 ZNF137PP52743 207 aa5.93□□□□□ -1.46
USP54-211ENST00000474929 PSME3P61289 254 aa5.93□□□□□ -1.46
USP54-211ENST00000474929 TNP2Q05952 138 aa5.93□□□□□ -1.46
USP54-211ENST00000474929 LRRC36Q1X8D7 754 aa5.93□□□□□ -1.46
USP54-211ENST00000474929 TMEM42Q69YG0 159 aa5.93□□□□□ -1.46
USP54-211ENST00000474929 TBPL2Q6SJ96 375 aa5.93□□□□□ -1.46
USP54-211ENST00000474929 UNQ5815/PRO19632Q6UWF5 114 aa5.93□□□□□ -1.46
USP54-211ENST00000474929 SLC38A6Q8IZM9 456 aa5.93□□□□□ -1.46
USP54-211ENST00000474929 FAM58AQ8N1B3 248 aa5.93□□□□□ -1.46
USP54-211ENST00000474929 OR2T12Q8NG77 320 aa5.93□□□□□ -1.46
USP54-211ENST00000474929 THRSPQ92748 146 aa5.93□□□□□ -1.46
USP54-211ENST00000474929 LEAP2Q969E1 77 aa5.93□□□□□ -1.46
USP54-211ENST00000474929 SLAMF9Q96A28 289 aa5.93□□□□□ -1.46
USP54-211ENST00000474929 CMTM5Q96DZ9 223 aa5.93□□□□□ -1.46
USP54-211ENST00000474929 DHRS1Q96LJ7 313 aa5.93□□□□□ -1.46
USP54-211ENST00000474929 HOPXQ9BPY8 73 aaPredicted RBP5.93□□□□□ -1.46
USP54-211ENST00000474929 RNF167Q9H6Y7 350 aa5.93□□□□□ -1.46
USP54-211ENST00000474929 RHOFQ9HBH0 211 aa5.93□□□□□ -1.46
USP54-211ENST00000474929 MTCH1Q9NZJ7 389 aa5.93□□□□□ -1.46
USP54-211ENST00000474929 ARL2BPQ9Y2Y0 163 aa5.93□□□□□ -1.46
USP54-211ENST00000474929 KRTAP9-6A0A140TA67 174 aa5.92□□□□□ -1.46
USP54-211ENST00000474929 ANKRD34BA5PLL1 514 aa5.92□□□□□ -1.46
USP54-211ENST00000474929 FAM220BPB1ANY3 271 aa5.92□□□□□ -1.46
USP54-211ENST00000474929 NPIPB11E5RHQ5 1161 aa5.92□□□□□ -1.46
USP54-211ENST00000474929 NME4O00746 187 aa5.92□□□□□ -1.46
USP54-211ENST00000474929 ENTPD6O75354 484 aa5.92□□□□□ -1.46
USP54-211ENST00000474929 NDUFA3O95167 84 aa5.92□□□□□ -1.46
USP54-211ENST00000474929 ZNF682O95780 498 aa5.92□□□□□ -1.46
USP54-211ENST00000474929 OR2H2O95918 312 aa5.92□□□□□ -1.46
USP54-211ENST00000474929 H1F0P07305 194 aaKnown RBP5.92□□□□□ -1.46
USP54-211ENST00000474929 ZNF44P15621 663 aa5.92□□□□□ -1.46
USP54-211ENST00000474929 PRKACAP17612 351 aa5.92□□□□□ -1.46
USP54-211ENST00000474929 HTR1FP30939 366 aa5.92□□□□□ -1.46
USP54-211ENST00000474929 YAP1P46937 504 aaKnown RBP5.92□□□□□ -1.46
USP54-211ENST00000474929 LSAMPQ13449 338 aa5.92□□□□□ -1.46
USP54-211ENST00000474929 SLC25A26Q70HW3 274 aa5.92□□□□□ -1.46
USP54-211ENST00000474929 ERI1Q8IV48 349 aaKnown RBP5.92□□□□□ -1.46
USP54-211ENST00000474929 LYPD1Q8N2G4 141 aa5.92□□□□□ -1.46
USP54-211ENST00000474929 POC5Q8NA72 575 aa5.92□□□□□ -1.46
USP54-211ENST00000474929 OR52M1Q8NGK5 317 aa5.92□□□□□ -1.46
USP54-211ENST00000474929 CASTOR1Q8WTX7 329 aa5.92□□□□□ -1.46
USP54-211ENST00000474929 MS4A10Q96PG2 267 aa5.92□□□□□ -1.46
USP54-211ENST00000474929 CADM1Q9BY67 442 aaKnown RBP5.92□□□□□ -1.46
USP54-211ENST00000474929 ANKRD60Q9BZ19 345 aa5.92□□□□□ -1.46
USP54-211ENST00000474929 MOB1AQ9H8S9 216 aa5.92□□□□□ -1.46
USP54-211ENST00000474929 GPR84Q9NQS5 396 aa5.92□□□□□ -1.46
USP54-211ENST00000474929 GPR173Q9NS66 373 aa5.92□□□□□ -1.46
USP54-211ENST00000474929 ARL8BQ9NVJ2 186 aa5.92□□□□□ -1.46
USP54-211ENST00000474929 NUBP2Q9Y5Y2 271 aa5.92□□□□□ -1.46
USP54-211ENST00000474929 A3GALT2U3KPV4 340 aa5.92□□□□□ -1.46
USP54-211ENST00000474929 IGLV2-18A0A075B6J9 118 aa5.91□□□□□ -1.46
USP54-211ENST00000474929 FAM230AA0A1W2PPH8 454 aa5.91□□□□□ -1.46
USP54-211ENST00000474929 J3KTA2 159 aa5.91□□□□□ -1.46
USP54-211ENST00000474929 FFAR1O14842 300 aa5.91□□□□□ -1.46
USP54-211ENST00000474929 GATBO75879 557 aaKnown RBP5.91□□□□□ -1.46
USP54-211ENST00000474929 IGHV3-7P01780 117 aa5.91□□□□□ -1.46
USP54-211ENST00000474929 CD74P04233 296 aa5.91□□□□□ -1.46
USP54-211ENST00000474929 PRDX6P30041 224 aa5.91□□□□□ -1.46
USP54-211ENST00000474929 IFNGR2P38484 337 aa5.91□□□□□ -1.46
USP54-211ENST00000474929 FUT6P51993 359 aa5.91□□□□□ -1.46
USP54-211ENST00000474929 FAM3BP58499 235 aaPredicted RBP5.91□□□□□ -1.46
USP54-211ENST00000474929 NDPQ00604 133 aa5.91□□□□□ -1.46
USP54-211ENST00000474929 PLGLAQ15195 96 aa5.91□□□□□ -1.46
USP54-211ENST00000474929 ZNF829Q3KNS6 432 aaPredicted RBP5.91□□□□□ -1.46
USP54-211ENST00000474929 TMEM30BQ3MIR4 351 aa5.91□□□□□ -1.46
USP54-211ENST00000474929 RNF212Q495C1 297 aa5.91□□□□□ -1.46
USP54-211ENST00000474929 IFI44LQ53G44 452 aa5.91□□□□□ -1.46
USP54-211ENST00000474929 ZNF57Q68EA5 555 aaPredicted RBP5.91□□□□□ -1.46
USP54-211ENST00000474929 ZNF343Q6P1L6 599 aa5.91□□□□□ -1.46
USP54-211ENST00000474929 FKBP9P1Q75LS8 142 aa5.91□□□□□ -1.46
USP54-211ENST00000474929 SPATA12Q7Z6I5 190 aa5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 147.5 ms