RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 DSCR9P59020 149 aa9.86□□□□□ -0.83
USP54-209ENST00000464635 ARPC4P59998 168 aa9.86□□□□□ -0.83
USP54-209ENST00000464635 TSPAN5P62079 268 aa9.86□□□□□ -0.83
USP54-209ENST00000464635 LOXL1Q08397 574 aaPredicted RBP9.86□□□□□ -0.83
USP54-209ENST00000464635 KCNJ8Q15842 424 aa9.86□□□□□ -0.83
USP54-209ENST00000464635 TMEM128Q5BJH2 165 aa9.86□□□□□ -0.83
USP54-209ENST00000464635 ATPAF1Q5TC12 328 aaPredicted RBP9.86□□□□□ -0.83
USP54-209ENST00000464635 SLC35E4Q6ICL7 350 aa9.86□□□□□ -0.83
USP54-209ENST00000464635 FAAP20Q6NZ36 180 aa9.86□□□□□ -0.83
USP54-209ENST00000464635 C11orf88Q6PI97 169 aa9.86□□□□□ -0.83
USP54-209ENST00000464635 TRAT1Q6PIZ9 186 aa9.86□□□□□ -0.83
USP54-209ENST00000464635 LRP11Q86VZ4 500 aa9.86□□□□□ -0.83
USP54-209ENST00000464635 OR2Z1Q8NG97 314 aa9.86□□□□□ -0.83
USP54-209ENST00000464635 PPP1R35Q8TAP8 253 aa9.86□□□□□ -0.83
USP54-209ENST00000464635 ZFAND1Q8TCF1 268 aa9.86□□□□□ -0.83
USP54-209ENST00000464635 ZNF486Q96H40 463 aaPredicted RBP9.86□□□□□ -0.83
USP54-209ENST00000464635 OR2V2Q96R30 315 aa9.86□□□□□ -0.83
USP54-209ENST00000464635 DNTTIP1Q9H147 329 aa9.86□□□□□ -0.83
USP54-209ENST00000464635 TMEM165Q9HC07 324 aa9.86□□□□□ -0.83
USP54-209ENST00000464635 ZNF221Q9UK13 617 aa9.86□□□□□ -0.83
USP54-209ENST00000464635 ATRQ13535 2644 aa9.86□□□□□ -0.83
USP54-209ENST00000464635 PIGBOS1A0A0B4J2F0 54 aa9.85□□□□□ -0.83
USP54-209ENST00000464635 A8MV72 311 aaPredicted RBP9.85□□□□□ -0.83
USP54-209ENST00000464635 TRDCB7Z8K6 153 aa9.85□□□□□ -0.83
USP54-209ENST00000464635 OR2H2O95918 312 aa9.85□□□□□ -0.83
USP54-209ENST00000464635 HAND1O96004 215 aa9.85□□□□□ -0.83
USP54-209ENST00000464635 IGHV1-46P01743 117 aa9.85□□□□□ -0.83
USP54-209ENST00000464635 PMP2P02689 132 aa9.85□□□□□ -0.83
USP54-209ENST00000464635 OR4E1P0C645 316 aa9.85□□□□□ -0.83
USP54-209ENST00000464635 OR5H8P0DN80 308 aa9.85□□□□□ -0.83
USP54-209ENST00000464635 MUC1P15941 1255 aaPredicted RBP9.85□□□□□ -0.83
USP54-209ENST00000464635 SNRPD2P62316 118 aaKnown RBP9.85□□□□□ -0.83
USP54-209ENST00000464635 NKPD1Q17RQ9 610 aa9.85□□□□□ -0.83
USP54-209ENST00000464635 CR1LQ2VPA4 569 aa9.85□□□□□ -0.83
USP54-209ENST00000464635 AADACL3Q5VUY0 350 aa9.85□□□□□ -0.83
USP54-209ENST00000464635 ZNF497Q6ZNH5 498 aa9.85□□□□□ -0.83
USP54-209ENST00000464635 OR4A4PQ8NGN8 299 aa9.85□□□□□ -0.83
USP54-209ENST00000464635 ZNF431Q8TF32 576 aaPredicted RBP9.85□□□□□ -0.83
USP54-209ENST00000464635 MRGPRFQ96AM1 343 aa9.85□□□□□ -0.83
USP54-209ENST00000464635 EGLN1Q9GZT9 426 aa9.85□□□□□ -0.83
USP54-209ENST00000464635 TOLLIPQ9H0E2 274 aa9.85□□□□□ -0.83
USP54-209ENST00000464635 ETAA1Q9NY74 926 aa9.85□□□□□ -0.83
USP54-209ENST00000464635 EHFQ9NZC4 300 aa9.85□□□□□ -0.83
USP54-209ENST00000464635 RNF7Q9UBF6 113 aa9.85□□□□□ -0.83
USP54-209ENST00000464635 FLVCR2Q9UPI3 526 aa9.85□□□□□ -0.83
USP54-209ENST00000464635 MEIKINA0A087WXM9 373 aa9.84□□□□□ -0.83
USP54-209ENST00000464635 A6NLC8 198 aa9.84□□□□□ -0.83
USP54-209ENST00000464635 OR2AT4A6NND4 320 aa9.84□□□□□ -0.83
USP54-209ENST00000464635 VWC2LB2RUY7 222 aa9.84□□□□□ -0.83
USP54-209ENST00000464635 M0R233 179 aa9.84□□□□□ -0.83
USP54-209ENST00000464635 OR2A4O95047 310 aa9.84□□□□□ -0.83
USP54-209ENST00000464635 F12P00748 615 aaPredicted RBP9.84□□□□□ -0.83
USP54-209ENST00000464635 HPXP02790 462 aa9.84□□□□□ -0.83
USP54-209ENST00000464635 CTSDP07339 412 aaPredicted RBP9.84□□□□□ -0.83
USP54-209ENST00000464635 WNT2P09544 360 aa9.84□□□□□ -0.83
USP54-209ENST00000464635 IGHV4-31P0DP07 118 aa9.84□□□□□ -0.83
USP54-209ENST00000464635 ZNF44P15621 663 aa9.84□□□□□ -0.83
USP54-209ENST00000464635 GLP1RP43220 463 aa9.84□□□□□ -0.83
USP54-209ENST00000464635 PDLIM4P50479 330 aa9.84□□□□□ -0.83
USP54-209ENST00000464635 TNFAIP6P98066 277 aaPredicted RBP9.84□□□□□ -0.83
USP54-209ENST00000464635 SCGB2B2Q4G0G5 96 aa9.84□□□□□ -0.83
USP54-209ENST00000464635 TEX36Q5VZQ5 186 aa9.84□□□□□ -0.83
USP54-209ENST00000464635 C1orf87Q8N0U7 546 aa9.84□□□□□ -0.83
USP54-209ENST00000464635 ZCCHC24Q8N2G6 241 aaKnown RBP9.84□□□□□ -0.83
USP54-209ENST00000464635 GCSAMQ8N6F7 178 aa9.84□□□□□ -0.83
USP54-209ENST00000464635 OR5D13Q8NGL4 314 aa9.84□□□□□ -0.83
USP54-209ENST00000464635 OR11L1Q8NGX0 322 aa9.84□□□□□ -0.83
USP54-209ENST00000464635 MRPL30Q8TCC3 161 aaKnown RBP9.84□□□□□ -0.83
USP54-209ENST00000464635 SNX22Q96L94 193 aa9.84□□□□□ -0.83
USP54-209ENST00000464635 OR2A7Q96R45 310 aa9.84□□□□□ -0.83
USP54-209ENST00000464635 VRK1Q99986 396 aaPredicted RBP9.84□□□□□ -0.83
USP54-209ENST00000464635 SYT3Q9BQG1 590 aa9.84□□□□□ -0.83
USP54-209ENST00000464635 CABLES2Q9BTV7 478 aa9.84□□□□□ -0.83
USP54-209ENST00000464635 FAM234AQ9H0X4 552 aa9.84□□□□□ -0.83
USP54-209ENST00000464635 GCM1Q9NP62 436 aa9.84□□□□□ -0.83
USP54-209ENST00000464635 C1orf123Q9NWV4 160 aa9.84□□□□□ -0.83
USP54-209ENST00000464635 ZNF230Q9UIE0 474 aaPredicted RBP9.84□□□□□ -0.83
USP54-209ENST00000464635 FZR1Q9UM11 496 aa9.84□□□□□ -0.83
USP54-209ENST00000464635 VSIG4Q9Y279 399 aa9.84□□□□□ -0.83
USP54-209ENST00000464635 MXRA5Q9NR99 2828 aa9.84□□□□□ -0.83
USP54-209ENST00000464635 COL6A5A8TX70 2615 aa9.84□□□□□ -0.83
USP54-209ENST00000464635 CUBNO60494 3623 aa9.83□□□□□ -0.84
USP54-209ENST00000464635 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.83□□□□□ -0.84
USP54-209ENST00000464635 LRRC30A6NM36 301 aa9.83□□□□□ -0.84
USP54-209ENST00000464635 FABP7O15540 132 aa9.83□□□□□ -0.84
USP54-209ENST00000464635 TUSC2O75896 110 aa9.83□□□□□ -0.84
USP54-209ENST00000464635 RGS11O94810 467 aa9.83□□□□□ -0.84
USP54-209ENST00000464635 DUS4LO95620 317 aaKnown RBP9.83□□□□□ -0.84
USP54-209ENST00000464635 TK1P04183 234 aa9.83□□□□□ -0.84
USP54-209ENST00000464635 RLN1P04808 185 aa9.83□□□□□ -0.84
USP54-209ENST00000464635 GSTT2P0CG29 244 aa9.83□□□□□ -0.84
USP54-209ENST00000464635 VSIG10L2P0DP72 767 aa9.83□□□□□ -0.84
USP54-209ENST00000464635 ANXA3P12429 323 aa9.83□□□□□ -0.84
USP54-209ENST00000464635 USF1P22415 310 aaPredicted RBP9.83□□□□□ -0.84
USP54-209ENST00000464635 ZBTB25P24278 435 aa9.83□□□□□ -0.84
USP54-209ENST00000464635 ERP29P30040 261 aaKnown RBP9.83□□□□□ -0.84
USP54-209ENST00000464635 SRSF4Q08170 494 aaKnown RBP9.83□□□□□ -0.84
USP54-209ENST00000464635 MSMO1Q15800 293 aa9.83□□□□□ -0.84
USP54-209ENST00000464635 CARTPTQ16568 116 aa9.83□□□□□ -0.84
USP54-209ENST00000464635 PAN3Q58A45 887 aaKnown RBP9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms