RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 CHST6Q9GZX3 395 aa5.8□□□□□ -1.48
USP54-208ENST00000461520 RHOFQ9HBH0 211 aa5.8□□□□□ -1.48
USP54-208ENST00000461520 NEK6Q9HC98 313 aa5.8□□□□□ -1.48
USP54-208ENST00000461520 HMG20AQ9NP66 347 aa5.8□□□□□ -1.48
USP54-208ENST00000461520 IMPAD1Q9NX62 359 aa5.8□□□□□ -1.48
USP54-208ENST00000461520 IL36RNQ9UBH0 155 aa5.8□□□□□ -1.48
USP54-208ENST00000461520 HHLA2Q9UM44 414 aa5.8□□□□□ -1.48
USP54-208ENST00000461520 ORC6Q9Y5N6 252 aa5.8□□□□□ -1.48
USP54-208ENST00000461520 TRGV10A0A0A0MS01 117 aa5.79□□□□□ -1.48
USP54-208ENST00000461520 SAC3D1A6NKF1 404 aa5.79□□□□□ -1.48
USP54-208ENST00000461520 SNTNA6NMZ2 147 aa5.79□□□□□ -1.48
USP54-208ENST00000461520 SH2D1BO14796 132 aa5.79□□□□□ -1.48
USP54-208ENST00000461520 PLXNB1O43157 2135 aa5.79□□□□□ -1.48
USP54-208ENST00000461520 CIB2O75838 187 aa5.79□□□□□ -1.48
USP54-208ENST00000461520 KDM4BO94953 1096 aa5.79□□□□□ -1.48
USP54-208ENST00000461520 TOMM40O96008 361 aa5.79□□□□□ -1.48
USP54-208ENST00000461520 PRB2P02812 416 aaPredicted RBP5.79□□□□□ -1.48
USP54-208ENST00000461520 MT-ND2P03891 347 aa5.79□□□□□ -1.48
USP54-208ENST00000461520 CSN2P05814 226 aa5.79□□□□□ -1.48
USP54-208ENST00000461520 RPSAP08865 295 aaKnown RBP5.79□□□□□ -1.48
USP54-208ENST00000461520 HTR1AP08908 422 aa5.79□□□□□ -1.48
USP54-208ENST00000461520 OCM2P0CE71 109 aa5.79□□□□□ -1.48
USP54-208ENST00000461520 OCMP0CE72 109 aaPredicted RBP5.79□□□□□ -1.48
USP54-208ENST00000461520 CD28P10747 220 aa5.79□□□□□ -1.48
USP54-208ENST00000461520 DUSP1P28562 367 aa5.79□□□□□ -1.48
USP54-208ENST00000461520 OR3A1P47881 315 aa5.79□□□□□ -1.48
USP54-208ENST00000461520 NANOS2P60321 138 aaKnown RBP5.79□□□□□ -1.48
USP54-208ENST00000461520 SNRPGP62308 76 aaKnown RBP5.79□□□□□ -1.48
USP54-208ENST00000461520 BLCAPP62952 87 aa5.79□□□□□ -1.48
USP54-208ENST00000461520 BDH1Q02338 343 aa5.79□□□□□ -1.48
USP54-208ENST00000461520 NSUN5P1Q3KNT7 163 aa5.79□□□□□ -1.48
USP54-208ENST00000461520 HEPN1Q6WQI6 88 aa5.79□□□□□ -1.48
USP54-208ENST00000461520 C16orf82Q7Z2V1 217 aa5.79□□□□□ -1.48
USP54-208ENST00000461520 TRAPPC6BQ86SZ2 158 aa5.79□□□□□ -1.48
USP54-208ENST00000461520 RTN4RL2Q86UN3 420 aa5.79□□□□□ -1.48
USP54-208ENST00000461520 ABHD12Q8N2K0 398 aa5.79□□□□□ -1.48
USP54-208ENST00000461520 ACBD7Q8N6N7 88 aa5.79□□□□□ -1.48
USP54-208ENST00000461520 OR4P4Q8NGL7 312 aa5.79□□□□□ -1.48
USP54-208ENST00000461520 NDNFQ8TB73 568 aa5.79□□□□□ -1.48
USP54-208ENST00000461520 CORO2AQ92828 525 aa5.79□□□□□ -1.48
USP54-208ENST00000461520 CREB3L1Q96BA8 519 aa5.79□□□□□ -1.48
USP54-208ENST00000461520 FGGYQ96C11 551 aa5.79□□□□□ -1.48
USP54-208ENST00000461520 RNFT2Q96EX2 444 aa5.79□□□□□ -1.48
USP54-208ENST00000461520 MRPL48Q96GC5 212 aaKnown RBP5.79□□□□□ -1.48
USP54-208ENST00000461520 AKR1E2Q96JD6 320 aa5.79□□□□□ -1.48
USP54-208ENST00000461520 CITED2Q99967 270 aaPredicted RBP5.79□□□□□ -1.48
USP54-208ENST00000461520 COMMD4Q9H0A8 199 aa5.79□□□□□ -1.48
USP54-208ENST00000461520 GAL3ST2Q9H3Q3 398 aa5.79□□□□□ -1.48
USP54-208ENST00000461520 EXOSC4Q9NPD3 245 aaKnown RBP5.79□□□□□ -1.48
USP54-208ENST00000461520 TAS2R3Q9NYW6 316 aa5.79□□□□□ -1.48
USP54-208ENST00000461520 ZKSCAN7Q9P0L1 754 aaPredicted RBP5.79□□□□□ -1.48
USP54-208ENST00000461520 DPM3Q9P2X0 92 aa5.79□□□□□ -1.48
USP54-208ENST00000461520 GSTK1Q9Y2Q3 226 aa5.79□□□□□ -1.48
USP54-208ENST00000461520 PCDHGB5Q9Y5G0 923 aa5.79□□□□□ -1.48
USP54-208ENST00000461520 HILPDAQ9Y5L2 63 aa5.79□□□□□ -1.48
USP54-208ENST00000461520 IGKV1-12A0A0C4DH73 117 aa5.78□□□□□ -1.48
USP54-208ENST00000461520 OR4C45A6NMZ5 311 aa5.78□□□□□ -1.48
USP54-208ENST00000461520 LEUTXA8MZ59 168 aa5.78□□□□□ -1.48
USP54-208ENST00000461520 E9PQ18 207 aa5.78□□□□□ -1.48
USP54-208ENST00000461520 SIRPB1O00241 398 aa5.78□□□□□ -1.48
USP54-208ENST00000461520 PIN1P1O15428 100 aa5.78□□□□□ -1.48
USP54-208ENST00000461520 MMP23AO75900 390 aa5.78□□□□□ -1.48
USP54-208ENST00000461520 OR2H2O95918 312 aa5.78□□□□□ -1.48
USP54-208ENST00000461520 IGKV1D-12P01611 117 aa5.78□□□□□ -1.48
USP54-208ENST00000461520 IGLV1-47P01700 117 aa5.78□□□□□ -1.48
USP54-208ENST00000461520 CALCBP10092 127 aa5.78□□□□□ -1.48
USP54-208ENST00000461520 CDK2P24941 298 aa5.78□□□□□ -1.48
USP54-208ENST00000461520 BRS3P32247 399 aa5.78□□□□□ -1.48
USP54-208ENST00000461520 VDAC2P45880 294 aaPredicted RBP5.78□□□□□ -1.48
USP54-208ENST00000461520 THBS3P49746 956 aa5.78□□□□□ -1.48
USP54-208ENST00000461520 ALDH3A2P51648 485 aa5.78□□□□□ -1.48
USP54-208ENST00000461520 ARHGDIBP52566 201 aa5.78□□□□□ -1.48
USP54-208ENST00000461520 SNU13P55769 128 aaKnown RBP5.78□□□□□ -1.48
USP54-208ENST00000461520 ALKBH1Q13686 389 aaKnown RBP5.78□□□□□ -1.48
USP54-208ENST00000461520 SAXO1Q8IYX7 474 aa5.78□□□□□ -1.48
USP54-208ENST00000461520 LYG1Q8N1E2 194 aa5.78□□□□□ -1.48
USP54-208ENST00000461520 CHST4Q8NCG5 386 aa5.78□□□□□ -1.48
USP54-208ENST00000461520 OR51A4Q8NGJ6 313 aa5.78□□□□□ -1.48
USP54-208ENST00000461520 OR13C3Q8NGS6 347 aa5.78□□□□□ -1.48
USP54-208ENST00000461520 OR13C9Q8NGT0 318 aa5.78□□□□□ -1.48
USP54-208ENST00000461520 MPLKIPQ8TAP9 179 aa5.78□□□□□ -1.48
USP54-208ENST00000461520 STMN2Q93045 179 aa5.78□□□□□ -1.48
USP54-208ENST00000461520 PELI1Q96FA3 418 aa5.78□□□□□ -1.48
USP54-208ENST00000461520 C4orf36Q96KX1 117 aa5.78□□□□□ -1.48
USP54-208ENST00000461520 MMP28Q9H239 520 aa5.78□□□□□ -1.48
USP54-208ENST00000461520 EXOGQ9Y2C4 368 aaKnown RBP5.78□□□□□ -1.48
USP54-208ENST00000461520 A0A087X0M5 115 aa5.77□□□□□ -1.49
USP54-208ENST00000461520 A0A1B0GX30 115 aa5.77□□□□□ -1.49
USP54-208ENST00000461520 ODAMA1E959 279 aa5.77□□□□□ -1.49
USP54-208ENST00000461520 J3QLW9 94 aa5.77□□□□□ -1.49
USP54-208ENST00000461520 PRYO14603 147 aa5.77□□□□□ -1.49
USP54-208ENST00000461520 EI24O14681 340 aa5.77□□□□□ -1.49
USP54-208ENST00000461520 MPZL2O60487 215 aa5.77□□□□□ -1.49
USP54-208ENST00000461520 FGF2P09038 288 aa5.77□□□□□ -1.49
USP54-208ENST00000461520 DBTP11182 482 aaKnown RBP5.77□□□□□ -1.49
USP54-208ENST00000461520 ZNF44P15621 663 aa5.77□□□□□ -1.49
USP54-208ENST00000461520 ZNF19P17023 458 aa5.77□□□□□ -1.49
USP54-208ENST00000461520 CD34P28906 385 aa5.77□□□□□ -1.49
USP54-208ENST00000461520 CEACAM3P40198 252 aa5.77□□□□□ -1.49
USP54-208ENST00000461520 PTGFRP43088 359 aa5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms