RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 MUL1Q969V5 352 aa9.62□□□□□ -0.87
USP40-210ENST00000454354 RPEQ96AT9 228 aa9.62□□□□□ -0.87
USP40-210ENST00000454354 UQCC2Q9BRT2 126 aa9.62□□□□□ -0.87
USP40-210ENST00000454354 SLC25A33Q9BSK2 321 aa9.62□□□□□ -0.87
USP40-210ENST00000454354 MND1Q9BWT6 205 aa9.62□□□□□ -0.87
USP40-210ENST00000454354 SPACA1Q9HBV2 294 aa9.62□□□□□ -0.87
USP40-210ENST00000454354 PSG11Q9UQ72 335 aa9.62□□□□□ -0.87
USP40-210ENST00000454354 ERGIC3Q9Y282 383 aa9.62□□□□□ -0.87
USP40-210ENST00000454354 LSM2Q9Y333 95 aaKnown RBP9.62□□□□□ -0.87
USP40-210ENST00000454354 TRAV39A0A0B4J263 110 aa9.61□□□□□ -0.87
USP40-210ENST00000454354 A0A1W2PPK0 400 aa9.61□□□□□ -0.87
USP40-210ENST00000454354 ADARB2-AS1A8MUL3 147 aa9.61□□□□□ -0.87
USP40-210ENST00000454354 C15orf65H3BRN8 121 aa9.61□□□□□ -0.87
USP40-210ENST00000454354 OPN1MWP04001 364 aa9.61□□□□□ -0.87
USP40-210ENST00000454354 MAS1P04201 325 aa9.61□□□□□ -0.87
USP40-210ENST00000454354 OPN1MW2P0DN77 364 aa9.61□□□□□ -0.87
USP40-210ENST00000454354 OPN1MW3P0DN78 364 aa9.61□□□□□ -0.87
USP40-210ENST00000454354 CD28P10747 220 aa9.61□□□□□ -0.87
USP40-210ENST00000454354 MADCAM1Q13477 382 aa9.61□□□□□ -0.87
USP40-210ENST00000454354 ARSJQ5FYB0 599 aaPredicted RBP9.61□□□□□ -0.87
USP40-210ENST00000454354 C6orf141Q5SZD1 244 aa9.61□□□□□ -0.87
USP40-210ENST00000454354 ATAD3CQ5T2N8 411 aa9.61□□□□□ -0.87
USP40-210ENST00000454354 HIST2H2BDQ6DRA6 164 aa9.61□□□□□ -0.87
USP40-210ENST00000454354 AWAT2Q6E213 333 aa9.61□□□□□ -0.87
USP40-210ENST00000454354 NDUFA11Q86Y39 141 aa9.61□□□□□ -0.87
USP40-210ENST00000454354 GAPTQ8N292 157 aa9.61□□□□□ -0.87
USP40-210ENST00000454354 LINC00311Q8N616 119 aa9.61□□□□□ -0.87
USP40-210ENST00000454354 C8orf31Q8N9H6 132 aa9.61□□□□□ -0.87
USP40-210ENST00000454354 RFESDQ8TAC1 157 aa9.61□□□□□ -0.87
USP40-210ENST00000454354 NRG4Q8WWG1 115 aa9.61□□□□□ -0.87
USP40-210ENST00000454354 LEAP2Q969E1 77 aa9.61□□□□□ -0.87
USP40-210ENST00000454354 M0QZK8 103 aa9.6□□□□□ -0.87
USP40-210ENST00000454354 ORC5O43913 435 aa9.6□□□□□ -0.87
USP40-210ENST00000454354 PEX14O75381 377 aa9.6□□□□□ -0.87
USP40-210ENST00000454354 SC5DO75845 299 aa9.6□□□□□ -0.87
USP40-210ENST00000454354 MT-ND4P03905 459 aa9.6□□□□□ -0.87
USP40-210ENST00000454354 AMY1AP04745 511 aa9.6□□□□□ -0.87
USP40-210ENST00000454354 AMY2AP04746 511 aa9.6□□□□□ -0.87
USP40-210ENST00000454354 MGMTP16455 207 aa9.6□□□□□ -0.87
USP40-210ENST00000454354 RAB7AP51149 207 aa9.6□□□□□ -0.87
USP40-210ENST00000454354 AQP4P55087 323 aa9.6□□□□□ -0.87
USP40-210ENST00000454354 GP2P55259 537 aaKnown RBP9.6□□□□□ -0.87
USP40-210ENST00000454354 LOXL3P58215 753 aa9.6□□□□□ -0.87
USP40-210ENST00000454354 IRF3Q14653 427 aa9.6□□□□□ -0.87
USP40-210ENST00000454354 Q3ZCU0 254 aa9.6□□□□□ -0.87
USP40-210ENST00000454354 UNQ9370/PRO34162Q6UXP9 181 aa9.6□□□□□ -0.87
USP40-210ENST00000454354 OR8H3Q8N146 312 aa9.6□□□□□ -0.87
USP40-210ENST00000454354 MS4A15Q8N5U1 240 aa9.6□□□□□ -0.87
USP40-210ENST00000454354 TMEM104Q8NE00 496 aa9.6□□□□□ -0.87
USP40-210ENST00000454354 CAPSLQ8WWF8 208 aa9.6□□□□□ -0.87
USP40-210ENST00000454354 MYDGFQ969H8 173 aa9.6□□□□□ -0.87
USP40-210ENST00000454354 Q96M66 194 aa9.6□□□□□ -0.87
USP40-210ENST00000454354 CITED2Q99967 270 aaPredicted RBP9.6□□□□□ -0.87
USP40-210ENST00000454354 MOB4Q9Y3A3 225 aa9.6□□□□□ -0.87
USP40-210ENST00000454354 AIPO00170 330 aa9.59□□□□□ -0.87
USP40-210ENST00000454354 CA11O75493 328 aa9.59□□□□□ -0.87
USP40-210ENST00000454354 IGHV3-7P01780 117 aa9.59□□□□□ -0.87
USP40-210ENST00000454354 GLAP06280 429 aa9.59□□□□□ -0.87
USP40-210ENST00000454354 FAM106CPP0CH98 169 aa9.59□□□□□ -0.87
USP40-210ENST00000454354 GNG10P50151 68 aa9.59□□□□□ -0.87
USP40-210ENST00000454354 SLC35A2P78381 396 aa9.59□□□□□ -0.87
USP40-210ENST00000454354 CD83Q01151 205 aa9.59□□□□□ -0.87
USP40-210ENST00000454354 EMX1Q04741 257 aaPredicted RBP9.59□□□□□ -0.87
USP40-210ENST00000454354 GABPB1Q06547 395 aaPredicted RBP9.59□□□□□ -0.87
USP40-210ENST00000454354 ZNF816Q0VGE8 651 aaPredicted RBP9.59□□□□□ -0.87
USP40-210ENST00000454354 DIAPH2-AS1Q14236 149 aa9.59□□□□□ -0.87
USP40-210ENST00000454354 LTC4SQ16873 150 aa9.59□□□□□ -0.87
USP40-210ENST00000454354 TMEM30BQ3MIR4 351 aa9.59□□□□□ -0.87
USP40-210ENST00000454354 ABCA11PQ4W5N1 156 aa9.59□□□□□ -0.87
USP40-210ENST00000454354 RAB12Q6IQ22 244 aa9.59□□□□□ -0.87
USP40-210ENST00000454354 OR56B4Q8NH76 319 aa9.59□□□□□ -0.87
USP40-210ENST00000454354 NEK7Q8TDX7 302 aa9.59□□□□□ -0.87
USP40-210ENST00000454354 PHYHIPQ92561 330 aa9.59□□□□□ -0.87
USP40-210ENST00000454354 ARL11Q969Q4 196 aa9.59□□□□□ -0.87
USP40-210ENST00000454354 OR5M11Q96RB7 305 aa9.59□□□□□ -0.87
USP40-210ENST00000454354 GFOD1Q9NXC2 390 aa9.59□□□□□ -0.87
USP40-210ENST00000454354 SCN3BQ9NY72 215 aa9.59□□□□□ -0.87
USP40-210ENST00000454354 GHRLQ9UBU3 117 aa9.59□□□□□ -0.87
USP40-210ENST00000454354 C12orf77C9JDV5 145 aa9.58□□□□□ -0.88
USP40-210ENST00000454354 MCRIP1C9JLW8 97 aa9.58□□□□□ -0.88
USP40-210ENST00000454354 PTGES3LE9PB15 166 aa9.58□□□□□ -0.88
USP40-210ENST00000454354 SDCBPO00560 298 aaPredicted RBP9.58□□□□□ -0.88
USP40-210ENST00000454354 HSD17B6O14756 317 aa9.58□□□□□ -0.88
USP40-210ENST00000454354 CRTAPO75718 401 aaPredicted RBP9.58□□□□□ -0.88
USP40-210ENST00000454354 SNRNP70P08621 437 aaKnown RBP9.58□□□□□ -0.88
USP40-210ENST00000454354 UBBP0CG47 229 aa9.58□□□□□ -0.88
USP40-210ENST00000454354 CD37P11049 281 aa9.58□□□□□ -0.88
USP40-210ENST00000454354 MYF6P23409 242 aa9.58□□□□□ -0.88
USP40-210ENST00000454354 GPR50Q13585 617 aa9.58□□□□□ -0.88
USP40-210ENST00000454354 INSL4Q14641 139 aa9.58□□□□□ -0.88
USP40-210ENST00000454354 SPHARQ15513 63 aa9.58□□□□□ -0.88
USP40-210ENST00000454354 NSUN5P1Q3KNT7 163 aa9.58□□□□□ -0.88
USP40-210ENST00000454354 ACSM3Q53FZ2 586 aa9.58□□□□□ -0.88
USP40-210ENST00000454354 C6orf183Q5T699 404 aa9.58□□□□□ -0.88
USP40-210ENST00000454354 KPRPQ5T749 579 aaPredicted RBP9.58□□□□□ -0.88
USP40-210ENST00000454354 SIGIRRQ6IA17 410 aa9.58□□□□□ -0.88
USP40-210ENST00000454354 TRAT1Q6PIZ9 186 aa9.58□□□□□ -0.88
USP40-210ENST00000454354 LRRTM1Q86UE6 522 aa9.58□□□□□ -0.88
USP40-210ENST00000454354 LYG1Q8N1E2 194 aa9.58□□□□□ -0.88
USP40-210ENST00000454354 DRAM1Q8N682 238 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms